Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010293

Physical Location & Seq

Genomic Coordinates Forward (+)

49511439 .. 49513545

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG364900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGAAGGGAATGCCATACTCCGACGTCGAAAAGGGGCCAGAAAGGGGGCAAGAGAAGAGGCGGCACAGGAGTCGACCACCTCCGCCACAAATTTGCCCCCCACCAGAGAAGCCATGGTTTCCGTGGCTCGTGCCAGTCATATTTTCAGCCAATCTCATCATGTTCATCATCACCATGTATATCAACGACTGCCCGTCTCAAGAGAATCATCCTCGGTGCGTTTTGCCTTTCTTGAAGAGGTTCTCTTTCCAACCCTTCAAAGAAAACATCCTCCTTGGTCCTTCTGCACTCACTCTGCAAAAGCTAGGTGCCCTTGAAAAGAACTTAGTGGTGGACGACGGAGAAGGATGGCGCCTCTTGTCTTGCATGTGGCTTCATGCTGGAGTTGTTCATCTGGTTGTTAACATGTTAAGCCTTCTATTCATAGGAATCCGGCTTGAGCAGGAATTCGGTTTCATCAGAATAGGACCCCTCTACGTACTTTCTGGATTAGCTGGAAGCTTAGCATCTACAAATCATGGAAAAGAATCTAGCGTATCAGTTGGCGCATCTGGGGCACTTTTTGGATTGTTGGGAGCCATGCTATCTGAGCTTTTTACAAACTGGACAATCTATACAAAGAAGTGCATAGCGCTCCTCATACTCGTCAGCGTCATTGCCGTGAATTTGGCATTAGGTTTTATACCTAAGGTGGACAGTTCAGCTCATGTAGGAGGATTCCTCGCCGGATTTTTCTTTGGATTTGTTCTTCTTGTTCGCCCTCAATTTGGATATGTAAGCCGCAAGTACATTCCAAGTTCCTACAATGGCAAACTTAAATCTAGGCACAAGTGGTATCAATATGTTCTAGGAATCACTGCTACTATTATCTTAGTTCTTGGATATACATATGCCTTTGGCAAGCTATATGGTGTTCCACCAATGAAAAATCTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

313

Amino Acids

34.79

Weight (kDa)

9.63

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	115 - 252	3.9e-41	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52580
fragaria_vesca	FvH4_6g29990 FvH4_6g29990
prunus_persica	Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136001 RchiOBHm_Chr2g0136011
rosa_laevigata	RLG00000019496
rosa_multiflora	Rmu_ssc0000343.1_g000028
rosa_roxburghii	Rroxscaffold_2G00108700
rosa_rugosa	Rorug02G0327300 Rorug02G0327400 Rorug02G0327500 Rorug02G0327600
rosa_samantha	Rh2AG379300 Rh2BG385900 Rh2CG364900 Rh2DG402100
rosa_wichuraiana	Rw2G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccB1I	GGYRCC	2 cut(s)	311, 354
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	3 cut(s)	64, 86, 784
AcsI	RAATTY	3 cut(s)	93, 449, 667
AcyI	GRCGYC	2 cut(s)	27, 355
AfaI	GTAC	2 cut(s)	483, 791
AfeI	AGCGCT	1 cut(s)	636
AfiI	CCNNNNNNNGG	2 cut(s)	47, 770
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	3 cut(s)	238, 262, 320
AhdI	GACNNNNNGTC	1 cut(s)	196
AluBI	AGCT	6 cut(s)	307, 497, 504, 595, 707, 907
AluI	AGCT	6 cut(s)	307, 497, 504, 595, 707, 907
Alw26I	GTCTC	1 cut(s)	204
Aor51HI	AGCGCT	1 cut(s)	636
AoxI	GGCC	1 cut(s)	38
ApoI	RAATTY	3 cut(s)	93, 449, 667
Asp700I	GAANNNNTTC	1 cut(s)	242
AspLEI	GCGC	3 cut(s)	357, 551, 637
AspS9I	GGNCC	3 cut(s)	38, 281, 470
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	281, 470
AxyI	CCTNAGG	1 cut(s)	690
BaeGI	GKGCMC	2 cut(s)	316, 562
BanI	GGYRCC	2 cut(s)	311, 354
BauI	CACGAG	1 cut(s)	131
BccI	CCATC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	647
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	4 cut(s)	308, 534, 825, 851
BfoI	RGCGCY	2 cut(s)	358, 638
BisI	GCNGC	2 cut(s)	65, 784
BlpI	GCTNAGC	1 cut(s)	505
BlsI	GCNGC	2 cut(s)	66, 785
Bme18I	GGWCC	2 cut(s)	281, 470
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmgT120I	GGNCC	3 cut(s)	38, 281, 470
BmiI	GGNNCC	5 cut(s)	39, 313, 356, 472, 580
BmsI	GCATC	2 cut(s)	518, 560
BplI	GAGNNNNNCTC	2 cut(s)	708, 740
BpmI	CTGGAG	1 cut(s)	405
Bpu1102I	GCTNAGC	1 cut(s)	505
BpuEI	CTTGAG	2 cut(s)	186, 461
BsaAI	YACGTR	1 cut(s)	481
BsaHI	GRCGYC	2 cut(s)	27, 355
BsaJI	CCNNGG	4 cut(s)	116, 125, 215, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 770
Bse1I	ACTGG	2 cut(s)	137, 611
Bse21I	CCTNAGG	1 cut(s)	690
Bse3DI	GCAATG	1 cut(s)	657
BseDI	CCNNGG	4 cut(s)	116, 125, 215, 277
BseGI	GGATG	3 cut(s)	211, 270, 356
BseLI	CCNNNNNNNGG	2 cut(s)	47, 770
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	137, 611
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	2 cut(s)	316, 562
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	40
BshNI	GGYRCC	2 cut(s)	311, 354
BsiSI	CCGG	2 cut(s)	436, 729
BslI	CCNNNNNNNGG	2 cut(s)	47, 770
BsmAI	GTCTC	1 cut(s)	204
BsmBI	CGTCTC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	316, 562
Bsp1720I	GCTNAGC	1 cut(s)	505
Bsp19I	CCATGG	1 cut(s)	116
BspACI	CCGC	3 cut(s)	64, 86, 784
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	583
BspLI	GGNNCC	5 cut(s)	39, 313, 356, 472, 580
BspT107I	GGYRCC	2 cut(s)	311, 354
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	137, 611
BssECI	CCNNGG	4 cut(s)	116, 125, 215, 277
BssNI	GRCGYC	2 cut(s)	27, 355
BssSI	CACGAG	1 cut(s)	131
BssT1I	CCWWGG	2 cut(s)	116, 277
Bst2BI	CACGAG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	2 cut(s)	53, 233
BstACI	GRCGYC	2 cut(s)	27, 355
BstBAI	YACGTR	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	905
BstDEI	CTNAG	5 cut(s)	328, 505, 591, 690, 874
BstDSI	CCRYGG	2 cut(s)	116, 125
BstF5I	GGATG	3 cut(s)	211, 270, 356
BstH2I	RGCGCY	2 cut(s)	358, 638
BstHHI	GCGC	3 cut(s)	357, 551, 637
BstMAI	GTCTC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 592
BstNSI	RCATGY	2 cut(s)	373, 412
BstSLI	GKGCMC	2 cut(s)	316, 562
BstSNI	TACGTA	1 cut(s)	481
Bsu36I	CCTNAGG	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	2 cut(s)	116, 125
BtsCI	GGATG	3 cut(s)	211, 270, 356
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	1 cut(s)	858
Cac8I	GCNNGC	1 cut(s)	905
CfoI	GCGC	3 cut(s)	357, 551, 637
Cfr13I	GGNCC	3 cut(s)	38, 281, 470
CseI	GACGC	1 cut(s)	643
Csp6I	GTAC	2 cut(s)	482, 790
CviAII	CATG	9 cut(s)	117, 163, 178, 370, 380, 409, 521, 583, 710
CviQI	GTAC	2 cut(s)	482, 790
DdeI	CTNAG	5 cut(s)	328, 505, 591, 690, 874
DinI	GGCGCC	1 cut(s)	356
DriI	GACNNNNNGTC	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	53, 233
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	2 cut(s)	53, 233
EciI	GGCGGA	1 cut(s)	75
Eco105I	TACGTA	1 cut(s)	481
Eco130I	CCWWGG	2 cut(s)	116, 277
Eco47I	GGWCC	2 cut(s)	281, 470
Eco47III	AGCGCT	1 cut(s)	636
Eco81I	CCTNAGG	1 cut(s)	690
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	116, 277
EgeI	GGCGCC	1 cut(s)	356
EheI	GGCGCC	1 cut(s)	356
ErhI	CCWWGG	2 cut(s)	116, 277
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	9 cut(s)	120, 166, 181, 373, 383, 412, 524, 586, 713
FatI	CATG	9 cut(s)	116, 162, 177, 369, 379, 408, 520, 582, 709
FauNDI	CATATG	1 cut(s)	892
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	65, 784
FokI	GGATG	3 cut(s)	198, 257, 363
Fsp4HI	GCNGC	2 cut(s)	65, 784
FspBI	CTAG	4 cut(s)	308, 534, 825, 851
GlaI	GCGC	3 cut(s)	356, 550, 636
GluI	GCNGC	2 cut(s)	65, 784
GsuI	CTGGAG	1 cut(s)	405
HaeII	RGCGCY	2 cut(s)	358, 638
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	2 cut(s)	436, 729
HgaI	GACGC	1 cut(s)	643
HhaI	GCGC	3 cut(s)	357, 551, 637
Hin1I	GRCGYC	2 cut(s)	27, 355
Hin1II	CATG	9 cut(s)	120, 166, 181, 373, 383, 412, 524, 586, 713
Hin6I	GCGC	3 cut(s)	355, 549, 635
HinP1I	GCGC	3 cut(s)	355, 549, 635
HincII	GTYRAC	2 cut(s)	77, 406
HindII	GTYRAC	2 cut(s)	77, 406
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	6 cut(s)	73, 208, 432, 530, 720, 855
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	2 cut(s)	436, 729
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	4 cut(s)	77, 337, 406, 697
Hpy188I	TCNGA	3 cut(s)	25, 464, 592
Hpy188III	TCNNGA	3 cut(s)	203, 235, 489
Hpy8I	GTNNAC	4 cut(s)	77, 337, 406, 697
Hpy99I	CGWCG	3 cut(s)	29, 32, 344
HpyAV	CCTTC	4 cut(s)	268, 294, 341, 428
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	2 cut(s)	27, 480
HpyCH4V	TGCA	4 cut(s)	290, 301, 369, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 592
HpyF3I	CTNAG	5 cut(s)	328, 505, 591, 690, 874
HpySE526I	ACGT	2 cut(s)	27, 480
Hsp92I	GRCGYC	2 cut(s)	27, 355
Hsp92II	CATG	9 cut(s)	120, 166, 181, 373, 383, 412, 524, 586, 713
HspAI	GCGC	3 cut(s)	355, 549, 635
KasI	GGCGCC	1 cut(s)	354
KspAI	GTTAAC	1 cut(s)	406
LmnI	GCTCC	2 cut(s)	578, 642
LweI	GCATC	2 cut(s)	518, 560
MaeI	CTAG	4 cut(s)	308, 534, 825, 851
MaeII	ACGT	2 cut(s)	27, 480
MboII	GAAGA	3 cut(s)	70, 250, 743
MhlI	GDGCHC	2 cut(s)	316, 562
MluCI	AATT	4 cut(s)	93, 449, 667, 767
Mly113I	GGCGCC	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	2 cut(s)	48, 277
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	3 cut(s)	405, 413, 819
MslI	CAYNNNNRTG	2 cut(s)	176, 662
MspI	CCGG	2 cut(s)	436, 729
Mva1269I	GAATGC	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	557, 592
NarI	GGCGCC	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	116
NdeI	CATATG	1 cut(s)	892
NlaIII	CATG	9 cut(s)	120, 166, 181, 373, 383, 412, 524, 586, 713
NlaIV	GGNNCC	5 cut(s)	39, 313, 356, 472, 580
NspI	RCATGY	2 cut(s)	373, 412
PciI	ACATGT	1 cut(s)	408
PctI	GAATGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	5 cut(s)	208, 432, 530, 720, 855
PkrI	GCNGC	2 cut(s)	66, 785
PleI	GAGTC	1 cut(s)	81
PluTI	GGCGCC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	81
Ppu21I	YACGTR	1 cut(s)	481
PpuMI	RGGWCCY	1 cut(s)	470
PscI	ACATGT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	470
PspN4I	GGNNCC	5 cut(s)	39, 313, 356, 472, 580
PspPI	GGNCC	3 cut(s)	38, 281, 470
PspPPI	RGGWCCY	1 cut(s)	470
RsaI	GTAC	2 cut(s)	483, 791
RsaNI	GTAC	2 cut(s)	482, 790
RseI	CAYNNNNRTG	2 cut(s)	176, 662
SalI	GTCGAC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	405, 413, 819
SatI	GCNGC	2 cut(s)	65, 784
Sau96I	GGNCC	3 cut(s)	38, 281, 470
SchI	GAGTC	1 cut(s)	82
SduI	GDGCHC	2 cut(s)	316, 562
SfaNI	GCATC	2 cut(s)	518, 560
SfoI	GGCGCC	1 cut(s)	356
SinI	GGWCC	2 cut(s)	281, 470
SmiMI	CAYNNNNRTG	2 cut(s)	176, 662
SmlI	CTYRAG	2 cut(s)	201, 440
SmoI	CTYRAG	2 cut(s)	201, 440
SnaBI	TACGTA	1 cut(s)	481
Sse9I	AATT	4 cut(s)	93, 449, 667, 767
SsiI	CCGC	3 cut(s)	64, 86, 784
SspDI	GGCGCC	1 cut(s)	354
SspMI	CTAG	4 cut(s)	308, 534, 825, 851
StyI	CCWWGG	2 cut(s)	116, 277
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	2 cut(s)	30, 483
TaqI	TCGA	2 cut(s)	30, 76
TasI	AATT	4 cut(s)	93, 449, 667, 767
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	2 cut(s)	67, 786
TfiI	GAWTC	5 cut(s)	208, 432, 530, 720, 855
Tru1I	TTAA	3 cut(s)	405, 413, 819
Tru9I	TTAA	3 cut(s)	405, 413, 819
TscAI	CASTG	1 cut(s)	865
TspDTI	ATGAA	6 cut(s)	157, 368, 383, 415, 448, 941
TspGWI	ACGGA	2 cut(s)	114, 357
TspRI	CASTG	1 cut(s)	865
VpaK11BI	GGWCC	2 cut(s)	281, 470
XapI	RAATTY	3 cut(s)	93, 449, 667
XceI	RCATGY	2 cut(s)	373, 412
XcmI	CCANNNNNNNNNTGG	2 cut(s)	114, 123
XmiI	GTMKAC	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	4 cut(s)	308, 534, 825, 851
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.