Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010293

Physical Location & Seq

Genomic Coordinates Forward (+)

40148520 .. 40149265

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0327500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCCGCCGCTCCTTCACCGACCTCCGGCTATCCTAACATGACGTACGTTCTCTACGCCTCCATCTCCAGCCTGATGCCCATATTCAAAGCTCACAATCTCCTCGGCTACGTTGACTACTCCATCACCCCGCCAGATAAGTTCCTCCCGAACGACGCCGGAGAACCGATGACCACAATCAGCTCGAGCTACGAAACCTGGATGGCGCACAAGGCCAAATTTAAGCCGCCCGAGACGTCAGAAACTTGGTCAGAAAGTCGTCTTCTTCCTCCTCCTCTTCTTCTTCTGCGGCCAAGACTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

101

Amino Acids

11.26

Weight (kDa)

6.06

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52580
fragaria_vesca	FvH4_6g29990 FvH4_6g29990
prunus_persica	Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136001 RchiOBHm_Chr2g0136011
rosa_laevigata	RLG00000019496
rosa_multiflora	Rmu_ssc0000343.1_g000028
rosa_roxburghii	Rroxscaffold_2G00108700
rosa_rugosa	Rorug02G0327300 Rorug02G0327400 Rorug02G0327500 Rorug02G0327600
rosa_samantha	Rh2AG379300 Rh2BG385900 Rh2CG364900 Rh2DG402100
rosa_wichuraiana	Rw2G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	5 cut(s)	6, 9, 131, 227, 289
AcoI	YGGCCR	2 cut(s)	3, 290
AcsI	RAATTY	1 cut(s)	218
AcyI	GRCGYC	2 cut(s)	156, 236
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	3 cut(s)	92, 183, 189
AluI	AGCT	3 cut(s)	92, 183, 189
Alw26I	GTCTC	1 cut(s)	227
Ama87I	CYCGRG	2 cut(s)	184, 230
AoxI	GGCC	3 cut(s)	3, 213, 290
ApoI	RAATTY	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	9, 118
AvaI	CYCGRG	2 cut(s)	184, 230
BbsI	GAAGAC	1 cut(s)	254
BccI	CCATC	3 cut(s)	71, 131, 196
BciT130I	CCWGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	227
BisI	GCNGC	4 cut(s)	6, 9, 227, 290
BlsI	GCNGC	4 cut(s)	7, 10, 228, 291
Bme1390I	CCNGG	1 cut(s)	199
BmeT110I	CYCGRG	2 cut(s)	184, 230
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	52
BsaHI	GRCGYC	2 cut(s)	156, 236
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseRI	GAGGAG	3 cut(s)	92, 261, 264
BshFI	GGCC	3 cut(s)	5, 215, 292
BsiHKCI	CYCGRG	2 cut(s)	184, 230
BsiSI	CCGG	2 cut(s)	27, 159
BsiWI	CGTACG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsnI	GGCC	3 cut(s)	5, 215, 292
BsoBI	CYCGRG	2 cut(s)	184, 230
BspACI	CCGC	5 cut(s)	6, 9, 131, 227, 289
BspANI	GGCC	3 cut(s)	5, 215, 292
BsrBI	CCGCTC	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	103
BssNI	GRCGYC	2 cut(s)	156, 236
Bst2UI	CCWGG	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	2 cut(s)	156, 236
BstF5I	GGATG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	5, 215, 292
BtsCI	GGATG	1 cut(s)	207
CfoI	GCGC	1 cut(s)	208
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	1 cut(s)	46
EaeI	YGGCCR	2 cut(s)	3, 290
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	184, 230
EcoRII	CCWGG	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	1 cut(s)	43
FaiI	YATR	2 cut(s)	41, 83
FatI	CATG	1 cut(s)	39
FauI	CCCGC	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	6, 9, 227, 290
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	6, 9, 227, 290
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	4 cut(s)	6, 9, 227, 290
GsuI	CTGGAG	1 cut(s)	52
HaeIII	GGCC	3 cut(s)	5, 215, 292
HapII	CCGG	2 cut(s)	27, 159
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	208
Hin1I	GRCGYC	2 cut(s)	156, 236
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	297
HpaII	CCGG	2 cut(s)	27, 159
HphI	GGTGA	2 cut(s)	9, 118
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	241, 253
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	24
HpyCH4IV	ACGT	4 cut(s)	44, 48, 111, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpySE526I	ACGT	4 cut(s)	44, 48, 111, 236
Hsp92I	GRCGYC	2 cut(s)	156, 236
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	7 cut(s)	40, 82, 86, 147, 172, 184, 211
LweI	GCATC	1 cut(s)	66
MaeII	ACGT	4 cut(s)	44, 48, 111, 236
MbiI	CCGCTC	1 cut(s)	11
MboII	GAAGA	5 cut(s)	254, 257, 269, 272, 275
MluCI	AATT	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	291
MnlI	CCTC	7 cut(s)	34, 70, 113, 155, 279, 282, 285
MseI	TTAA	2 cut(s)	222, 304
MspI	CCGG	2 cut(s)	27, 159
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	212
NlaIII	CATG	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	84
PaeR7I	CTCGAG	1 cut(s)	184
Pfl23II	CGTACG	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	7, 10, 228, 291
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspLI	CGTACG	1 cut(s)	45
PspXI	VCTCGAGB	1 cut(s)	184
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	222, 304
SatI	GCNGC	4 cut(s)	6, 9, 227, 290
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	199
SetI	ASST	9 cut(s)	26, 47, 51, 94, 114, 185, 191, 200, 239
SfaNI	GCATC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	184
SlaI	CTCGAG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	5 cut(s)	6, 9, 131, 227, 289
StyD4I	CCNGG	1 cut(s)	197
TaiI	ACGT	4 cut(s)	47, 51, 114, 239
TaqI	TCGA	2 cut(s)	185, 300
TasI	AATT	1 cut(s)	218
TauI	GCSGC	4 cut(s)	8, 11, 229, 292
Tru1I	TTAA	2 cut(s)	222, 304
Tru9I	TTAA	2 cut(s)	222, 304
XapI	RAATTY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	184
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.