Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010293

Physical Location & Seq

Genomic Coordinates Reverse (-)

40156458 .. 40156961

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0327600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTTAGAACAAGCTTTACATCTCGAACTTGAGATTTTTGAAAAGATTTTAATGGTTATTTGGGGCCTGTGGAGAAATAGAAATAACAAGCTATATGAGGACATGGTTCAATCTACCATTAATATTTTCTTAAGCTCATGGCTTGAGGAATTTTATAAAGCTATAATGACATGTTCAACATCTAACAAAGCTGATGTGCACCGGTGGAAGCCTACTCTAAATGGTTTCAAGCTAAATGTAGATGGAGCCTTTCTAATGCAAGTACCAAAGGGAGGACTGGGAGGAGTTCGTCATAACCAAAATGACAAGGTGCTTGCTGCATTTGCTCAACCTGTACAACATGTGACCTCGGCTTTACAAGTAGAATTGCTTGCTATTCGAGCTAAACTTGATCTACTGCAGCAACTTAATATCTCTGGAGCTACTAGTGAATCTGACTGTCATCAGGCTGTGCTAGACATCAAGAATACTTCAATGGCATTGTCTGAGTTTGTAACCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

167

Amino Acids

18.89

Weight (kDa)

6.19

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	79 - 159	1.4e-09	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52580
fragaria_vesca	FvH4_6g29990 FvH4_6g29990
prunus_persica	Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136001 RchiOBHm_Chr2g0136011
rosa_laevigata	RLG00000019496
rosa_multiflora	Rmu_ssc0000343.1_g000028
rosa_roxburghii	Rroxscaffold_2G00108700
rosa_rugosa	Rorug02G0327300 Rorug02G0327400 Rorug02G0327500 Rorug02G0327600
rosa_samantha	Rh2AG379300 Rh2BG385900 Rh2CG364900 Rh2DG402100
rosa_wichuraiana	Rw2G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	149
AfaI	GTAC	2 cut(s)	264, 336
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflII	CTTAAG	1 cut(s)	130
AflIII	ACRYGT	2 cut(s)	170, 340
AgeI	ACCGGT	1 cut(s)	201
AgsI	TTSAA	5 cut(s)	41, 110, 177, 229, 474
AhlI	ACTAGT	1 cut(s)	425
AluBI	AGCT	8 cut(s)	14, 91, 135, 161, 191, 232, 383, 422
AluI	AGCT	8 cut(s)	14, 91, 135, 161, 191, 232, 383, 422
Alw21I	GWGCWC	1 cut(s)	201
Alw44I	GTGCAC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	317, 400
ApoI	RAATTY	1 cut(s)	149
AseI	ATTAAT	1 cut(s)	120
AsiGI	ACCGGT	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	304, 412
BccI	CCATC	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	2 cut(s)	426, 455
BfmI	CTRYAG	1 cut(s)	398
BfrI	CTTAAG	1 cut(s)	130
BisI	GCNGC	2 cut(s)	318, 401
BlsI	GCNGC	2 cut(s)	319, 402
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	65, 247
BmrI	ACTGGG	1 cut(s)	287
BmuI	ACTGGG	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	438
BpuEI	CTTGAG	2 cut(s)	50, 164
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	297
BseSI	GKGCMC	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	304, 412
BshFI	GGCC	1 cut(s)	66
BshTI	ACCGGT	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	272
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	65, 247
BspMAI	CTGCAG	1 cut(s)	402
BspTI	CTTAAG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	440
BstAFI	CTTAAG	1 cut(s)	130
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	315, 372
BstDEI	CTNAG	1 cut(s)	486
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 380
BstNSI	RCATGY	2 cut(s)	174, 344
BstSFI	CTRYAG	1 cut(s)	398
BstSLI	GKGCMC	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	304, 412
BsuRI	GGCC	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	315, 372
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	263, 335
CspAI	ACCGGT	1 cut(s)	201
CviAII	CATG	4 cut(s)	103, 138, 171, 341
CviQI	GTAC	2 cut(s)	263, 335
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	64
FaeI	CATG	4 cut(s)	106, 141, 174, 344
FaiI	YATR	9 cut(s)	94, 96, 104, 139, 156, 164, 172, 294, 342
FatI	CATG	4 cut(s)	102, 137, 170, 340
Fnu4HI	GCNGC	2 cut(s)	318, 401
Fsp4HI	GCNGC	2 cut(s)	318, 401
FspBI	CTAG	2 cut(s)	426, 455
GluI	GCNGC	2 cut(s)	318, 401
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	4 cut(s)	106, 141, 174, 344
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	1 cut(s)	431
HpaII	CCGG	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	436, 487
Hpy188III	TCNNGA	3 cut(s)	23, 417, 463
Hpy8I	GTNNAC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	4 cut(s)	199, 259, 320, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 380
HpyF3I	CTNAG	1 cut(s)	486
Hsp92II	CATG	4 cut(s)	106, 141, 174, 344
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	2 cut(s)	245, 419
LpnPI	CCDG	6 cut(s)	80, 215, 263, 345, 402, 431
Lsp1109I	GCAGC	2 cut(s)	304, 412
MaeI	CTAG	2 cut(s)	426, 455
MaeIII	GTNAC	2 cut(s)	343, 493
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	2 cut(s)	149, 365
MnlI	CCTC	5 cut(s)	91, 139, 266, 275, 358
MseI	TTAA	4 cut(s)	50, 120, 131, 408
MspCI	CTTAAG	1 cut(s)	130
MspI	CCGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	323, 380
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	4 cut(s)	106, 141, 174, 344
NlaIV	GGNNCC	2 cut(s)	65, 247
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	2 cut(s)	174, 344
PciI	ACATGT	2 cut(s)	170, 340
PfeI	GAWTC	1 cut(s)	431
PinAI	ACCGGT	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	319, 402
PscI	ACATGT	2 cut(s)	170, 340
PshBI	ATTAAT	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	65, 247
PspPI	GGNCC	1 cut(s)	64
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	402
RsaI	GTAC	2 cut(s)	264, 336
RsaNI	GTAC	2 cut(s)	263, 335
SaqAI	TTAA	4 cut(s)	50, 120, 131, 408
SatI	GCNGC	2 cut(s)	318, 401
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	398
SgrAI	CRCCGGYG	1 cut(s)	201
SmlI	CTYRAG	3 cut(s)	29, 130, 143
SmoI	CTYRAG	3 cut(s)	29, 130, 143
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	2 cut(s)	149, 365
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	2 cut(s)	426, 455
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	2 cut(s)	24, 379
TasI	AATT	2 cut(s)	149, 365
TatI	WGTACW	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	4 cut(s)	50, 120, 131, 408
Tru9I	TTAA	4 cut(s)	50, 120, 131, 408
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	317, 400
Tsp45I	GTSAC	1 cut(s)	343
Vha464I	CTTAAG	1 cut(s)	130
VneI	GTGCAC	1 cut(s)	197
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	2 cut(s)	174, 344
XspI	CTAG	2 cut(s)	426, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.