Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010293

Physical Location & Seq

Genomic Coordinates Reverse (-)

32767697 .. 32769791

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGGAAGGGAATGCCATACTCCGACGTCGAAAAGGGGCCAGAAAGGGGGCAAGAGAAGAGGCGGCACAGGAGTCGACCACCTCCGCCACAAATTTGCCCCCCACCAGAGAAGCCATGGTTTCCGTGGCTCGTGCCAGTCATATTTTCGGCCAATCTCATCATGTTCATCATCACCATGTATATCAACGACTGCCCGTCTCAAGAGAATCATCCTCGTCTGCAAAAGCTAGGTGCCCTTGAAAAGAACCTAGTGGTGGACGACGGAGAAGGATGGCGTCTCTTGTCTTGCATGTGGCTTCATGCTGGAGTTGTTCATCTGGTTGTTAACATGTTAAGCCTACTATTCATAGGAATCCGGCTTGAGCAGGAATTCGGTTTCATCAGAATAGGACCCCTCTACGTACTTTCTGGATTAGCTGGAAGCTTAGCATCTACAAATCATGGAAAAGAATCTAGCGTATCAGTTGGCGCATCTGGGGCACTTTTTGGATTGTTGGGAGCCATGCTATCTGAGCTTTTTACAAACTGGACAATCTATACAAAGAAGTGCATAGCGCTCCTCATACTCGTCAGCGTCATTGCCGTGAATTTGGCATTAGGTTTTCTACCCAAGGTGGACAGTTCAGCTCATGTAGGAGGATTCCTCGCCGGATTTTTCTTTGGCTTTGTTCTTCTTGTTCGCCCTCAATTTGGATATGTAAGCCGCAAGTACATTCCAAGTTCCTACAATGGCAAACTTAAATCTAGGCACAAGTGGTATCAATATGTTCTAGGAATCACTGCTACTATTATCTTAGTTCTTGGATATACATATGCCTTTGGCAAGCTATATGGTGTTCCACCAATGAAAAATATGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

287

Amino Acids

31.86

Weight (kDa)

9.59

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	89 - 226	4.2e-41	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52580
fragaria_vesca	FvH4_6g29990 FvH4_6g29990
prunus_persica	Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136001 RchiOBHm_Chr2g0136011
rosa_laevigata	RLG00000019496
rosa_multiflora	Rmu_ssc0000343.1_g000028
rosa_roxburghii	Rroxscaffold_2G00108700
rosa_rugosa	Rorug02G0327300 Rorug02G0327400 Rorug02G0327500 Rorug02G0327600
rosa_samantha	Rh2AG379300 Rh2BG385900 Rh2CG364900 Rh2DG402100
rosa_wichuraiana	Rw2G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	3 cut(s)	64, 86, 706
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	3 cut(s)	93, 371, 589
AcyI	GRCGYC	2 cut(s)	27, 277
AfaI	GTAC	2 cut(s)	405, 713
AfeI	AGCGCT	1 cut(s)	558
AfiI	CCNNNNNNNGG	3 cut(s)	47, 256, 692
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	242
AhdI	GACNNNNNGTC	1 cut(s)	196
AluBI	AGCT	6 cut(s)	229, 419, 426, 517, 629, 829
AluI	AGCT	6 cut(s)	229, 419, 426, 517, 629, 829
Alw26I	GTCTC	2 cut(s)	204, 284
Aor51HI	AGCGCT	1 cut(s)	558
AoxI	GGCC	2 cut(s)	38, 150
ApoI	RAATTY	3 cut(s)	93, 371, 589
AspLEI	GCGC	2 cut(s)	473, 559
AspS9I	GGNCC	2 cut(s)	38, 392
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	2 cut(s)	238, 484
BanI	GGYRCC	1 cut(s)	233
BauI	CACGAG	1 cut(s)	131
BccI	CCATC	1 cut(s)	267
BceAI	ACGGC	1 cut(s)	569
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BcoDI	GTCTC	2 cut(s)	204, 284
BfaI	CTAG	5 cut(s)	230, 251, 456, 747, 773
BfoI	RGCGCY	1 cut(s)	560
BisI	GCNGC	2 cut(s)	65, 706
BlpI	GCTNAGC	1 cut(s)	427
BlsI	GCNGC	2 cut(s)	66, 707
Bme18I	GGWCC	1 cut(s)	392
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	38, 392
BmiI	GGNNCC	4 cut(s)	39, 235, 394, 502
BmsI	GCATC	2 cut(s)	440, 482
BplI	GAGNNNNNCTC	2 cut(s)	630, 662
BpmI	CTGGAG	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	427
BpuEI	CTTGAG	2 cut(s)	186, 383
BsaAI	YACGTR	1 cut(s)	403
BsaHI	GRCGYC	2 cut(s)	27, 277
BsaJI	CCNNGG	3 cut(s)	116, 125, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 256, 692
Bse1I	ACTGG	2 cut(s)	137, 533
Bse3DI	GCAATG	1 cut(s)	579
BseDI	CCNNGG	3 cut(s)	116, 125, 612
BseGI	GGATG	2 cut(s)	211, 278
BseLI	CCNNNNNNNGG	3 cut(s)	47, 256, 692
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	137, 533
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	2 cut(s)	238, 484
BshFI	GGCC	2 cut(s)	40, 152
BshNI	GGYRCC	1 cut(s)	233
BsiSI	CCGG	2 cut(s)	358, 651
BslI	CCNNNNNNNGG	3 cut(s)	47, 256, 692
BsmAI	GTCTC	2 cut(s)	204, 284
BsmBI	CGTCTC	2 cut(s)	204, 284
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	40, 152
Bsp1286I	GDGCHC	2 cut(s)	238, 484
Bsp1720I	GCTNAGC	1 cut(s)	427
Bsp19I	CCATGG	1 cut(s)	116
BspACI	CCGC	3 cut(s)	64, 86, 706
BspANI	GGCC	2 cut(s)	40, 152
BspCNI	CTCAG	1 cut(s)	505
BspLI	GGNNCC	4 cut(s)	39, 235, 394, 502
BspT107I	GGYRCC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	579
BsrI	ACTGG	2 cut(s)	137, 533
BssECI	CCNNGG	3 cut(s)	116, 125, 612
BssNI	GRCGYC	2 cut(s)	27, 277
BssSI	CACGAG	1 cut(s)	131
BssT1I	CCWWGG	2 cut(s)	116, 612
Bst2BI	CACGAG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	623
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	2 cut(s)	27, 277
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	827
BstDEI	CTNAG	3 cut(s)	427, 513, 796
BstDSI	CCRYGG	2 cut(s)	116, 125
BstF5I	GGATG	2 cut(s)	211, 278
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	2 cut(s)	473, 559
BstMAI	GTCTC	2 cut(s)	204, 284
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 514
BstNSI	RCATGY	2 cut(s)	295, 334
BstSLI	GKGCMC	2 cut(s)	238, 484
BstSNI	TACGTA	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	40, 152
BtgI	CCRYGG	2 cut(s)	116, 125
BtsCI	GGATG	2 cut(s)	211, 278
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	1 cut(s)	780
Cac8I	GCNNGC	1 cut(s)	827
CfoI	GCGC	2 cut(s)	473, 559
Cfr13I	GGNCC	2 cut(s)	38, 392
CseI	GACGC	2 cut(s)	266, 565
Csp6I	GTAC	2 cut(s)	404, 712
CviAII	CATG	9 cut(s)	117, 163, 178, 292, 302, 331, 443, 505, 632
CviQI	GTAC	2 cut(s)	404, 712
DdeI	CTNAG	3 cut(s)	427, 513, 796
DriI	GACNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	53
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	75
Eco105I	TACGTA	1 cut(s)	403
Eco130I	CCWWGG	2 cut(s)	116, 612
Eco47I	GGWCC	1 cut(s)	392
Eco47III	AGCGCT	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	116, 612
ErhI	CCWWGG	2 cut(s)	116, 612
Esp3I	CGTCTC	2 cut(s)	204, 284
FaeI	CATG	9 cut(s)	120, 166, 181, 295, 305, 334, 446, 508, 635
FatI	CATG	9 cut(s)	116, 162, 177, 291, 301, 330, 442, 504, 631
FauNDI	CATATG	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	65, 706
FokI	GGATG	2 cut(s)	198, 285
Fsp4HI	GCNGC	2 cut(s)	65, 706
FspBI	CTAG	5 cut(s)	230, 251, 456, 747, 773
GlaI	GCGC	2 cut(s)	472, 558
GluI	GCNGC	2 cut(s)	65, 706
GsuI	CTGGAG	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	2 cut(s)	40, 152
HapII	CCGG	2 cut(s)	358, 651
HgaI	GACGC	2 cut(s)	266, 565
HhaI	GCGC	2 cut(s)	473, 559
Hin1I	GRCGYC	2 cut(s)	27, 277
Hin1II	CATG	9 cut(s)	120, 166, 181, 295, 305, 334, 446, 508, 635
Hin6I	GCGC	2 cut(s)	471, 557
HinP1I	GCGC	2 cut(s)	471, 557
HincII	GTYRAC	2 cut(s)	77, 328
HindII	GTYRAC	2 cut(s)	77, 328
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	6 cut(s)	73, 208, 354, 452, 642, 777
HpaI	GTTAAC	1 cut(s)	328
HpaII	CCGG	2 cut(s)	358, 651
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	4 cut(s)	77, 259, 328, 619
Hpy188I	TCNGA	3 cut(s)	25, 386, 514
Hpy188III	TCNNGA	2 cut(s)	203, 411
Hpy8I	GTNNAC	4 cut(s)	77, 259, 328, 619
Hpy99I	CGWCG	3 cut(s)	29, 32, 266
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4IV	ACGT	2 cut(s)	27, 402
HpyCH4V	TGCA	3 cut(s)	223, 291, 552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 514
HpyF3I	CTNAG	3 cut(s)	427, 513, 796
HpySE526I	ACGT	2 cut(s)	27, 402
Hsp92I	GRCGYC	2 cut(s)	27, 277
Hsp92II	CATG	9 cut(s)	120, 166, 181, 295, 305, 334, 446, 508, 635
HspAI	GCGC	2 cut(s)	471, 557
KspAI	GTTAAC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	500, 564
LweI	GCATC	2 cut(s)	440, 482
MaeI	CTAG	5 cut(s)	230, 251, 456, 747, 773
MaeII	ACGT	2 cut(s)	27, 402
MboII	GAAGA	2 cut(s)	70, 665
MhlI	GDGCHC	2 cut(s)	238, 484
MluCI	AATT	4 cut(s)	93, 371, 589, 689
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	8 cut(s)	54, 93, 225, 407, 572, 632, 656, 696
MseI	TTAA	3 cut(s)	327, 335, 741
MslI	CAYNNNNRTG	2 cut(s)	176, 584
MspI	CCGG	2 cut(s)	358, 651
Mva1269I	GAATGC	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	479, 514
NcoI	CCATGG	1 cut(s)	116
NdeI	CATATG	1 cut(s)	814
NlaIII	CATG	9 cut(s)	120, 166, 181, 295, 305, 334, 446, 508, 635
NlaIV	GGNNCC	4 cut(s)	39, 235, 394, 502
NspI	RCATGY	2 cut(s)	295, 334
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	18
PfeI	GAWTC	5 cut(s)	208, 354, 452, 642, 777
PkrI	GCNGC	2 cut(s)	66, 707
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Ppu21I	YACGTR	1 cut(s)	403
PpuMI	RGGWCCY	1 cut(s)	392
PscI	ACATGT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	392
PspN4I	GGNNCC	4 cut(s)	39, 235, 394, 502
PspPI	GGNCC	2 cut(s)	38, 392
PspPPI	RGGWCCY	1 cut(s)	392
RsaI	GTAC	2 cut(s)	405, 713
RsaNI	GTAC	2 cut(s)	404, 712
RseI	CAYNNNNRTG	2 cut(s)	176, 584
SalI	GTCGAC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	327, 335, 741
SatI	GCNGC	2 cut(s)	65, 706
Sau96I	GGNCC	2 cut(s)	38, 392
SchI	GAGTC	1 cut(s)	82
SduI	GDGCHC	2 cut(s)	238, 484
SfaNI	GCATC	2 cut(s)	440, 482
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	2 cut(s)	176, 584
SmlI	CTYRAG	2 cut(s)	201, 362
SmoI	CTYRAG	2 cut(s)	201, 362
SnaBI	TACGTA	1 cut(s)	403
Sse9I	AATT	4 cut(s)	93, 371, 589, 689
SsiI	CCGC	3 cut(s)	64, 86, 706
SspMI	CTAG	5 cut(s)	230, 251, 456, 747, 773
StyI	CCWWGG	2 cut(s)	116, 612
TaaI	ACNGT	1 cut(s)	623
TaiI	ACGT	2 cut(s)	30, 405
TaqI	TCGA	2 cut(s)	30, 76
TasI	AATT	4 cut(s)	93, 371, 589, 689
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	2 cut(s)	67, 708
TfiI	GAWTC	5 cut(s)	208, 354, 452, 642, 777
Tru1I	TTAA	3 cut(s)	327, 335, 741
Tru9I	TTAA	3 cut(s)	327, 335, 741
TscAI	CASTG	1 cut(s)	787
TspDTI	ATGAA	6 cut(s)	157, 290, 305, 337, 370, 863
TspGWI	ACGGA	2 cut(s)	114, 279
TspRI	CASTG	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	3 cut(s)	93, 371, 589
XceI	RCATGY	2 cut(s)	295, 334
XcmI	CCANNNNNNNNNTGG	2 cut(s)	114, 123
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	5 cut(s)	230, 251, 456, 747, 773
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.