Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010293

Physical Location & Seq

Genomic Coordinates Reverse (-)

40145990 .. 40146937

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0327400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGACTTCCTCTGCAAAAGCTCTCCCATTTTTCTTTCTTCTAGTGCTTTTCTCTTCTCTTCAAGTTGAAGCTAGACAGAGATTGTTCTTCAGCAAAGTCACCCACAGTAATGGGAATGGGCCCCAGATACCGGTCACAGAAGATCCAGCAACACCAACACCATCATATGCACCCACATATACACCAACATATTCACCATTATATGGACCAACATATACACCAGCACCAGCACCAGAATTAACAGTAGCAGAGTCACCAGAAGGAGGAGCACCACTTGTACCAGCACCGGCACCGTTTGATTCTGAACCAGAGTTCGGCTATGAGCTATATGGTTCTGCCGATCAGGAGACACCAACCACCATTGATGTCCAAAATGAAGTTGCAACTCAAGAAAATGGTCATTATGAAAATACCAACTTGTACAACGACAACAGTAAGTACGCGACCAATTACAACAGCGATGGATACACCACCAACTACATCAATGGCAGAGAAGGCTTTACCAACAGCTATTACAGTAATGGCAATGGAAACAGCGTTGATGGGTTTGAACAGCAAGGGATGAGTGACACAAGGTTTCTGGAAAATGGAAGCTACTATCATCAGGACAATGACGTGAAGAATGAGAATAATGACAAGTTGAATGGGTACCAGTCCGGGAGAGGAAGCACTACAAATGAAGCGTATTTTGGTAACAGTGAGAAGCCCAATGAGTTCAACACCATGGAGGAGTATGAGAAGTACCAGGAGAACCAAGGATATGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

256

Amino Acids

28.41

Weight (kDa)

4.22

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52580
fragaria_vesca	FvH4_6g29990 FvH4_6g29990
prunus_persica	Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136001 RchiOBHm_Chr2g0136011
rosa_laevigata	RLG00000019496
rosa_multiflora	Rmu_ssc0000343.1_g000028
rosa_roxburghii	Rroxscaffold_2G00108700
rosa_rugosa	Rorug02G0327300 Rorug02G0327400 Rorug02G0327500 Rorug02G0327600
rosa_samantha	Rh2AG379300 Rh2BG385900 Rh2CG364900 Rh2DG402100
rosa_wichuraiana	Rw2G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	648
AccB1I	GGYRCC	2 cut(s)	289, 648
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccII	CGCG	1 cut(s)	443
AclWI	GGATC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	5 cut(s)	279, 422, 440, 650, 743
AfiI	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 314
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	5 cut(s)	62, 68, 551, 643, 718
AjiI	CACGTC	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	744
AjuI	GAANNNNNNNTTGG	2 cut(s)	672, 704
AluBI	AGCT	5 cut(s)	20, 71, 325, 510, 594
AluI	AGCT	5 cut(s)	20, 71, 325, 510, 594
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	119
ApaI	GGGCCC	1 cut(s)	123
AsiGI	ACCGGT	1 cut(s)	130
Asp718I	GGTACC	1 cut(s)	648
AspS9I	GGNCC	3 cut(s)	119, 120, 206
AsuC2I	CCSGG	1 cut(s)	658
AsuHPI	GGTGA	3 cut(s)	91, 186, 246
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	123
BanI	GGYRCC	2 cut(s)	289, 648
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	271
BccI	CCATC	3 cut(s)	169, 455, 536
BciT130I	CCWGG	1 cut(s)	746
BciVI	GTATCC	1 cut(s)	458
BcnI	CCSGG	1 cut(s)	658
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	2 cut(s)	41, 72
BfuI	GTATCC	1 cut(s)	458
Bme1390I	CCNGG	2 cut(s)	658, 746
Bme18I	GGWCC	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	616
BmgT120I	GGNCC	3 cut(s)	119, 120, 206
BmiI	GGNNCC	4 cut(s)	121, 122, 291, 650
BmrFI	CCNGG	2 cut(s)	658, 746
BpuEI	CTTGAG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	658
BsaJI	CCNNGG	2 cut(s)	723, 754
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 314
Bse118I	RCCGGY	2 cut(s)	130, 286
Bse1I	ACTGG	1 cut(s)	652
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	746
BseDI	CCNNGG	2 cut(s)	723, 754
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 314
BseMI	GCAATG	1 cut(s)	532
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	2 cut(s)	279, 743
BseSI	GKGCMC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	443
BshFI	GGCC	1 cut(s)	121
BshNI	GGYRCC	2 cut(s)	289, 648
BshTI	ACCGGT	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	3 cut(s)	131, 287, 657
BslI	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 314
BsmAI	GTCTC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	121
Bsp120I	GGGCCC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	123, 271
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	142, 340
Bsp19I	CCATGG	1 cut(s)	723
BspANI	GGCC	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	4 cut(s)	121, 122, 291, 650
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	2 cut(s)	289, 648
BsrDI	GCAATG	1 cut(s)	532
BsrFI	RCCGGY	2 cut(s)	130, 286
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	652
BssAI	RCCGGY	2 cut(s)	130, 286
BssECI	CCNNGG	2 cut(s)	723, 754
BssMI	GATC	2 cut(s)	142, 340
BssT1I	CCWWGG	2 cut(s)	723, 754
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	6 cut(s)	107, 244, 294, 434, 518, 698
Bst6I	CTCTTC	2 cut(s)	58, 63
BstAUI	TGTACA	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	723
BstF5I	GGATG	1 cut(s)	567
BstFNI	CGCG	1 cut(s)	443
BstKTI	GATC	2 cut(s)	145, 343
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	2 cut(s)	142, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNI	CCWGG	1 cut(s)	746
BstSCI	CCNGG	2 cut(s)	656, 744
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	723
BtgZI	GCGATG	1 cut(s)	474
BtrI	CACGTC	1 cut(s)	616
BtsCI	GGATG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	703
Cfr10I	RCCGGY	2 cut(s)	130, 286
Cfr13I	GGNCC	3 cut(s)	119, 120, 206
Csp6I	GTAC	5 cut(s)	278, 421, 439, 649, 742
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	1 cut(s)	724
CviJI	RGCY	9 cut(s)	20, 71, 121, 318, 325, 498, 510, 594, 706
CviKI_1	RGCY	9 cut(s)	20, 71, 121, 318, 325, 498, 510, 594, 706
CviQI	GTAC	5 cut(s)	278, 421, 439, 649, 742
DpnI	GATC	2 cut(s)	144, 342
DpnII	GATC	2 cut(s)	142, 340
Eam1104I	CTCTTC	2 cut(s)	58, 63
EarI	CTCTTC	2 cut(s)	58, 63
Eco130I	CCWWGG	2 cut(s)	723, 754
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	744
EcoT14I	CCWWGG	2 cut(s)	723, 754
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	2 cut(s)	723, 754
FaeI	CATG	1 cut(s)	727
FatI	CATG	1 cut(s)	723
FauNDI	CATATG	1 cut(s)	166
FokI	GGATG	1 cut(s)	574
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	41, 72
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	3 cut(s)	131, 287, 657
Hin1II	CATG	1 cut(s)	727
HinfI	GANTC	2 cut(s)	251, 299
HpaII	CCGG	3 cut(s)	131, 287, 657
HphI	GGTGA	3 cut(s)	91, 186, 246
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	4 cut(s)	344, 389, 581, 605
HpyAV	CCTTC	2 cut(s)	254, 488
HpyCH4III	ACNGT	6 cut(s)	107, 244, 294, 434, 518, 698
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	3 cut(s)	14, 170, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	1 cut(s)	727
KpnI	GGTACC	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	142, 340
LmnI	GCTCC	1 cut(s)	266
MaeI	CTAG	2 cut(s)	41, 72
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	5 cut(s)	97, 133, 252, 566, 692
MalI	GATC	2 cut(s)	144, 342
MboI	GATC	2 cut(s)	142, 340
MboII	GAAGA	6 cut(s)	29, 45, 50, 79, 152, 631
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	123, 271
MluCI	AATT	2 cut(s)	236, 448
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	19, 257, 656, 721
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	3 cut(s)	131, 287, 657
MspR9I	CCNGG	2 cut(s)	658, 746
MvaI	CCWGG	1 cut(s)	746
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	495
NciI	CCSGG	1 cut(s)	658
NcoI	CCATGG	1 cut(s)	723
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	142, 340
NlaIII	CATG	1 cut(s)	727
NlaIV	GGNNCC	4 cut(s)	121, 122, 291, 650
NmuCI	GTSAC	4 cut(s)	97, 133, 252, 566
PfeI	GAWTC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	656
PinAI	ACCGGT	1 cut(s)	130
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	744
PspGI	CCWGG	1 cut(s)	744
PspN4I	GGNNCC	4 cut(s)	121, 122, 291, 650
PspOMI	GGGCCC	1 cut(s)	119
PspPI	GGNCC	3 cut(s)	119, 120, 206
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	5 cut(s)	279, 422, 440, 650, 743
RsaNI	GTAC	5 cut(s)	278, 421, 439, 649, 742
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	142, 340
Sau96I	GGNCC	3 cut(s)	119, 120, 206
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	2 cut(s)	658, 746
SduI	GDGCHC	2 cut(s)	123, 271
SetI	ASST	7 cut(s)	22, 73, 327, 512, 578, 596, 618
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	2 cut(s)	236, 448
SspMI	CTAG	2 cut(s)	41, 72
StyD4I	CCNGG	2 cut(s)	656, 744
StyI	CCWWGG	2 cut(s)	723, 754
TaaI	ACNGT	6 cut(s)	107, 244, 294, 434, 518, 698
TaiI	ACGT	1 cut(s)	618
TasI	AATT	2 cut(s)	236, 448
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	4 cut(s)	97, 133, 252, 566
Tsp45I	GTSAC	4 cut(s)	97, 133, 252, 566
TspDTI	ATGAA	3 cut(s)	390, 420, 693
TspRI	CASTG	1 cut(s)	703
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	206
XspI	CTAG	2 cut(s)	41, 72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.