Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010293

Physical Location & Seq

Genomic Coordinates Forward (+)

23182621 .. 23185855

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGGAAGGGACCGCCATCCACCGACGTCGAAAAGGGGCCACCAGAAAGGGGACTTGAGAAGAGGCATCAGAGAAGCCGGCCACCTCCGCCACAAATATGCCCCCCACCAGAAAAGCCATGGTTTTCGTGGCTCGTACCAGTCATGTTTCTGATCAATGTCATCATGTTCATCGTCACCATGTATTATAACAATTGCCCTTCTCAAGAGGAACATCCAAAATGCGTTTTGCCTTTCTTGGGGAGGTTCTCTTTCCAACCCATCAAAGAAAACTACCTCCTTGGTCCTTCTATGAACACTCTGACAAAGCTAGGTGCCCTTTTCCGGAACTTAGTGGTGGAAGAAGGACAAGGATGGCGTCTCGTAACTTGCATGTGGCTTCATGTTGGACTTGTTCATCTGCTTGTTAACATGATAAGCCTTCTATTCGTAGGAATCCGGCTTGAGCAGGAATTCGGTTTCATCAGAATAGGACTCCTCTACTTACTTGCTGGATTAGGTGGAAGCTTAGCATCTGCAATTCATCAAAGACAAATTAAAGAGCTACAAGTATCAGTTGGCGCATCTGGGGCACTTTTTGGATTGTTGGGAGCCATGCTTTCTGAGCTTTTTACAAACTGGACAATCTATACAAGAAAGTGCATAGCGCTCCTCATACTCGTCGTCGTCATTTCCCTGAATTTGGCGCTAGGTTTTATACCTAGAGTGGACAGTTCAGCTCATATAGGAGGATTCCTCGCCGGCTTTTTCGTCGGCTTTGTTATTCTAGTTCGGCCTCAATTTGGATATGTAAACCGCAAGTACATTCCTACTTCCTATAAGGGCCAACTTAAATCTAGGCACAAGTGGTATCAATATGTACTAGGAATCACTGCTGCTATAATCTTAGTTCTCGGATATACATATGCTTTTGGCAAGCTATATGATGTTCCCCTGATGAAAAATCTGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

318

Amino Acids

35.6

Weight (kDa)

9.66

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	116 - 256	1.3e-41	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52580
fragaria_vesca	FvH4_6g29990 FvH4_6g29990
prunus_persica	Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136001 RchiOBHm_Chr2g0136011
rosa_laevigata	RLG00000019496
rosa_multiflora	Rmu_ssc0000343.1_g000028
rosa_roxburghii	Rroxscaffold_2G00108700
rosa_rugosa	Rorug02G0327300 Rorug02G0327400 Rorug02G0327500 Rorug02G0327600
rosa_samantha	Rh2AG379300 Rh2BG385900 Rh2CG364900 Rh2DG402100
rosa_wichuraiana	Rw2G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AatII	GACGTC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	314
AccIII	TCCGGA	1 cut(s)	324
AciI	CCGC	3 cut(s)	14, 89, 796
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	452, 679
AcyI	GRCGYC	2 cut(s)	27, 358
AfaI	GTAC	3 cut(s)	138, 803, 861
AfeI	AGCGCT	1 cut(s)	648
AfiI	CCNNNNNNNGG	5 cut(s)	50, 239, 324, 682, 782
AluBI	AGCT	6 cut(s)	310, 507, 544, 607, 719, 919
AluI	AGCT	6 cut(s)	310, 507, 544, 607, 719, 919
Alw26I	GTCTC	1 cut(s)	365
Aor13HI	TCCGGA	1 cut(s)	324
Aor51HI	AGCGCT	1 cut(s)	648
AoxI	GGCC	4 cut(s)	38, 80, 773, 823
ApeKI	GCWGC	1 cut(s)	875
ApoI	RAATTY	2 cut(s)	452, 679
AspLEI	GCGC	3 cut(s)	563, 649, 688
AspS9I	GGNCC	4 cut(s)	11, 38, 284, 823
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	2 cut(s)	11, 284
BaeGI	GKGCMC	2 cut(s)	319, 574
BanI	GGYRCC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	862
BccI	CCATC	3 cut(s)	25, 269, 348
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	6 cut(s)	311, 689, 702, 767, 837, 863
BfoI	RGCGCY	2 cut(s)	650, 689
BisI	GCNGC	1 cut(s)	876
BlpI	GCTNAGC	1 cut(s)	508
BlsI	GCNGC	1 cut(s)	877
Bme18I	GGWCC	2 cut(s)	11, 284
BmgT120I	GGNCC	4 cut(s)	11, 38, 284, 823
BmiI	GGNNCC	4 cut(s)	12, 39, 316, 592
BmsI	GCATC	3 cut(s)	76, 521, 572
BplI	GAGNNNNNCTC	2 cut(s)	720, 752
Bpu1102I	GCTNAGC	1 cut(s)	508
BpuEI	CTTGAG	3 cut(s)	77, 189, 464
BsaHI	GRCGYC	2 cut(s)	27, 358
BsaJI	CCNNGG	2 cut(s)	119, 280
BsaWI	WCCGGW	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 239, 324, 682, 782
Bse118I	RCCGGY	2 cut(s)	78, 740
Bse1I	ACTGG	2 cut(s)	140, 623
BseAI	TCCGGA	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	119, 280
BseGI	GGATG	3 cut(s)	17, 214, 359
BseLI	CCNNNNNNNGG	5 cut(s)	50, 239, 324, 682, 782
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	2 cut(s)	140, 623
BseRI	GAGGAG	2 cut(s)	467, 641
BseSI	GKGCMC	2 cut(s)	319, 574
BseXI	GCAGC	1 cut(s)	862
BshFI	GGCC	4 cut(s)	40, 82, 775, 825
BshNI	GGYRCC	1 cut(s)	314
BsiSI	CCGG	4 cut(s)	79, 325, 439, 741
BslFI	GGGAC	2 cut(s)	24, 66
BslI	CCNNNNNNNGG	5 cut(s)	50, 239, 324, 682, 782
BsmAI	GTCTC	1 cut(s)	365
BsmBI	CGTCTC	1 cut(s)	365
BsmFI	GGGAC	2 cut(s)	24, 66
BsnI	GGCC	4 cut(s)	40, 82, 775, 825
Bsp1286I	GDGCHC	2 cut(s)	319, 574
Bsp13I	TCCGGA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	153
Bsp1720I	GCTNAGC	1 cut(s)	508
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	3 cut(s)	14, 89, 796
BspANI	GGCC	4 cut(s)	40, 82, 775, 825
BspCNI	CTCAG	1 cut(s)	595
BspEI	TCCGGA	1 cut(s)	324
BspLI	GGNNCC	4 cut(s)	12, 39, 316, 592
BspT107I	GGYRCC	1 cut(s)	314
BsrFI	RCCGGY	2 cut(s)	78, 740
BsrI	ACTGG	2 cut(s)	140, 623
BssAI	RCCGGY	2 cut(s)	78, 740
BssECI	CCNNGG	2 cut(s)	119, 280
BssMI	GATC	1 cut(s)	153
BssNI	GRCGYC	2 cut(s)	27, 358
BssT1I	CCWWGG	2 cut(s)	119, 280
Bst4CI	ACNGT	1 cut(s)	713
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	2 cut(s)	27, 358
BstC8I	GCNNGC	3 cut(s)	80, 742, 917
BstDEI	CTNAG	4 cut(s)	331, 508, 603, 886
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	17, 214, 359
BstH2I	RGCGCY	2 cut(s)	650, 689
BstHHI	GCGC	3 cut(s)	563, 649, 688
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 569, 604
BstNSI	RCATGY	1 cut(s)	376
BstSLI	GKGCMC	2 cut(s)	319, 574
BstV1I	GCAGC	1 cut(s)	862
BsuRI	GGCC	4 cut(s)	40, 82, 775, 825
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	3 cut(s)	17, 214, 359
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	1 cut(s)	870
Cac8I	GCNNGC	3 cut(s)	80, 742, 917
CfoI	GCGC	3 cut(s)	563, 649, 688
Cfr10I	RCCGGY	2 cut(s)	78, 740
Cfr13I	GGNCC	4 cut(s)	11, 38, 284, 823
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	137, 802, 860
CviAII	CATG	8 cut(s)	120, 145, 166, 181, 373, 383, 412, 595
CviQI	GTAC	3 cut(s)	137, 802, 860
DdeI	CTNAG	4 cut(s)	331, 508, 603, 886
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	119, 280
Eco47I	GGWCC	2 cut(s)	11, 284
Eco47III	AGCGCT	1 cut(s)	648
EcoRI	GAATTC	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	119, 280
ErhI	CCWWGG	2 cut(s)	119, 280
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	8 cut(s)	123, 148, 169, 184, 376, 386, 415, 598
FaqI	GGGAC	2 cut(s)	24, 66
FatI	CATG	8 cut(s)	119, 144, 165, 180, 372, 382, 411, 594
FauNDI	CATATG	1 cut(s)	904
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	876
FokI	GGATG	3 cut(s)	4, 201, 366
Fsp4HI	GCNGC	1 cut(s)	876
FspBI	CTAG	6 cut(s)	311, 689, 702, 767, 837, 863
GlaI	GCGC	3 cut(s)	562, 648, 687
GluI	GCNGC	1 cut(s)	876
HaeII	RGCGCY	2 cut(s)	650, 689
HaeIII	GGCC	4 cut(s)	40, 82, 775, 825
HapII	CCGG	4 cut(s)	79, 325, 439, 741
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	3 cut(s)	563, 649, 688
Hin1I	GRCGYC	2 cut(s)	27, 358
Hin1II	CATG	8 cut(s)	123, 148, 169, 184, 376, 386, 415, 598
Hin6I	GCGC	3 cut(s)	561, 647, 686
HinP1I	GCGC	3 cut(s)	561, 647, 686
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	505
HinfI	GANTC	4 cut(s)	435, 474, 732, 867
HpaI	GTTAAC	1 cut(s)	409
HpaII	CCGG	4 cut(s)	79, 325, 439, 741
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	3 cut(s)	409, 709, 793
Hpy188I	TCNGA	6 cut(s)	72, 153, 303, 467, 604, 896
Hpy188III	TCNNGA	2 cut(s)	206, 325
Hpy8I	GTNNAC	3 cut(s)	409, 709, 793
Hpy99I	CGWCG	5 cut(s)	29, 32, 665, 668, 755
HpyAV	CCTTC	4 cut(s)	210, 297, 338, 431
HpyCH4III	ACNGT	1 cut(s)	713
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	372, 518, 642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 569, 604
HpyF3I	CTNAG	4 cut(s)	331, 508, 603, 886
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	2 cut(s)	27, 358
Hsp92II	CATG	8 cut(s)	123, 148, 169, 184, 376, 386, 415, 598
HspAI	GCGC	3 cut(s)	561, 647, 686
Kpn2I	TCCGGA	1 cut(s)	324
KroI	GCCGGC	2 cut(s)	78, 740
KroNI	GCCGGC	2 cut(s)	80, 742
Ksp22I	TGATCA	1 cut(s)	153
KspAI	GTTAAC	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	2 cut(s)	590, 654
Lsp1109I	GCAGC	1 cut(s)	862
LweI	GCATC	3 cut(s)	76, 521, 572
MaeI	CTAG	6 cut(s)	311, 689, 702, 767, 837, 863
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	175, 364
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	73, 353
MfeI	CAATTG	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	319, 574
MluCI	AATT	6 cut(s)	193, 452, 519, 534, 679, 779
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	2 cut(s)	280, 367
MroI	TCCGGA	1 cut(s)	324
MroNI	GCCGGC	2 cut(s)	78, 740
MseI	TTAA	3 cut(s)	408, 537, 831
MslI	CAYNNNNRTG	1 cut(s)	97
MspI	CCGG	4 cut(s)	79, 325, 439, 741
MunI	CAATTG	1 cut(s)	193
MwoI	GCNNNNNNNGC	3 cut(s)	88, 569, 604
NaeI	GCCGGC	2 cut(s)	80, 742
NcoI	CCATGG	1 cut(s)	119
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	1 cut(s)	153
NgoMIV	GCCGGC	2 cut(s)	78, 740
NlaIII	CATG	8 cut(s)	123, 148, 169, 184, 376, 386, 415, 598
NlaIV	GGNNCC	4 cut(s)	12, 39, 316, 592
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	376
PdiI	GCCGGC	2 cut(s)	80, 742
PfeI	GAWTC	3 cut(s)	435, 732, 867
PkrI	GCNGC	1 cut(s)	877
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	189
PspN4I	GGNNCC	4 cut(s)	12, 39, 316, 592
PspPI	GGNCC	4 cut(s)	11, 38, 284, 823
RsaI	GTAC	3 cut(s)	138, 803, 861
RsaNI	GTAC	3 cut(s)	137, 802, 860
RseI	CAYNNNNRTG	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	408, 537, 831
SatI	GCNGC	1 cut(s)	876
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	4 cut(s)	11, 38, 284, 823
SchI	GAGTC	1 cut(s)	468
SduI	GDGCHC	2 cut(s)	319, 574
SfaNI	GCATC	3 cut(s)	76, 521, 572
SinI	GGWCC	2 cut(s)	11, 284
SmiMI	CAYNNNNRTG	1 cut(s)	97
SmlI	CTYRAG	3 cut(s)	56, 204, 443
SmoI	CTYRAG	3 cut(s)	56, 204, 443
Sse9I	AATT	6 cut(s)	193, 452, 519, 534, 679, 779
SsiI	CCGC	3 cut(s)	14, 89, 796
SspMI	CTAG	6 cut(s)	311, 689, 702, 767, 837, 863
StyI	CCWWGG	2 cut(s)	119, 280
TaaI	ACNGT	1 cut(s)	713
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	30
TasI	AATT	6 cut(s)	193, 452, 519, 534, 679, 779
TatI	WGTACW	2 cut(s)	801, 859
TfiI	GAWTC	3 cut(s)	435, 732, 867
Tru1I	TTAA	3 cut(s)	408, 537, 831
Tru9I	TTAA	3 cut(s)	408, 537, 831
TscAI	CASTG	1 cut(s)	877
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	875
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	7 cut(s)	160, 308, 371, 386, 451, 512, 953
TspRI	CASTG	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	11, 284
XapI	RAATTY	2 cut(s)	452, 679
XceI	RCATGY	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	2 cut(s)	117, 126
XspI	CTAG	6 cut(s)	311, 689, 702, 767, 837, 863
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.