Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010293

Physical Location & Seq

Genomic Coordinates Forward (+)

53246926 .. 53249129

Gene Structure 2204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50684

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGTCGGGGTGTTCTACTGAGCTGCAAAATTCATTTCTATTCATTAGTTAGTCTTTTGCACAATCAGTGTCACACCGAAACATCCAAACTTAATCCAATTGCTACTCTTTGCAGTCTGCAAAAGCTAGGTGCCCTTGAACGGAACTTGGTGGTGGACGACGGGGAAGGATGGCGCCTCTTGTCTTGCATGTGGCTTCATGCTGGAGTTGTTCATCTGGTTGTTAACATGTTAAGCCTTCTATTCATAGGAATCCGGCTTGAGCAGGAATTCGGTTTCATCAGAATAGGACCCCTCTACGTACTTTCTGGCTTAGCTGGAAGCTTAGCATCTACAAATCATGGAAAAGAATCTAGCGTATCAGTTGGCGCATCTGGGGCACTTTTTGGATTGTTGGGAGCCATGCTATCTGAGCTTTTTACAAACTGGACAATCTATACAAAGAAGTGCATAGCGCTCCTCATACTCGTCAGCGTCATTGCCGTGAATTTGGCATTAGGTTTTATACCTAAGGTGGACAGTTCAGCTCATGTAGGAGGATTCCTCGCCGGATTTTTCTTTGGCTTTGTTCTTCTTGTTCGCCCTCAATTTGGATATGTAAGCCGCAAGTACATTCCAAGTTCCTATAATGGCAAACTTAAATCTAGGCACAAGTGGTATCAATATGTTCTAGGAATCACTGCTACTATTATCTTAGTTCTTGGATATACATATGCCTTTGGCAAGCTATATGGTGTTCCACCAATGAAAAATCTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

253

Amino Acids

27.66

Weight (kDa)

9.53

Isoelectric Point (pI)

22.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	55 - 192	2.3e-41	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52580
fragaria_vesca	FvH4_6g29990 FvH4_6g29990
prunus_persica	Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136001 RchiOBHm_Chr2g0136011
rosa_laevigata	RLG00000019496
rosa_multiflora	Rmu_ssc0000343.1_g000028
rosa_roxburghii	Rroxscaffold_2G00108700
rosa_rugosa	Rorug02G0327300 Rorug02G0327400 Rorug02G0327500 Rorug02G0327600
rosa_samantha	Rh2AG379300 Rh2BG385900 Rh2CG364900 Rh2DG402100
rosa_wichuraiana	Rw2G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 174
AciI	CCGC	1 cut(s)	604
AcsI	RAATTY	3 cut(s)	30, 269, 487
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	2 cut(s)	303, 611
AfeI	AGCGCT	1 cut(s)	456
AfiI	CCNNNNNNNGG	2 cut(s)	141, 590
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	140
AluBI	AGCT	7 cut(s)	24, 127, 317, 324, 415, 527, 727
AluI	AGCT	7 cut(s)	24, 127, 317, 324, 415, 527, 727
Aor51HI	AGCGCT	1 cut(s)	456
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	3 cut(s)	30, 269, 487
AspLEI	GCGC	3 cut(s)	177, 371, 457
AspS9I	GGNCC	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	510
BaeGI	GKGCMC	2 cut(s)	136, 382
BanI	GGYRCC	2 cut(s)	131, 174
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	467
BfaI	CTAG	4 cut(s)	128, 354, 645, 671
BfoI	RGCGCY	2 cut(s)	178, 458
BisI	GCNGC	2 cut(s)	25, 604
BlpI	GCTNAGC	2 cut(s)	313, 325
BlsI	GCNGC	2 cut(s)	26, 605
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	4 cut(s)	133, 176, 292, 400
BmsI	GCATC	2 cut(s)	338, 380
BplI	GAGNNNNNCTC	2 cut(s)	528, 560
BpmI	CTGGAG	1 cut(s)	225
Bpu1102I	GCTNAGC	2 cut(s)	313, 325
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 590
Bse1I	ACTGG	1 cut(s)	431
Bse21I	CCTNAGG	1 cut(s)	510
Bse3DI	GCAATG	1 cut(s)	477
BseGI	GGATG	2 cut(s)	83, 176
BseLI	CCNNNNNNNGG	2 cut(s)	141, 590
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	2 cut(s)	11, 402
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	449
BseSI	GKGCMC	2 cut(s)	136, 382
BseXI	GCAGC	1 cut(s)	11
BshNI	GGYRCC	2 cut(s)	131, 174
BsiSI	CCGG	2 cut(s)	256, 549
BslI	CCNNNNNNNGG	2 cut(s)	141, 590
Bsp1286I	GDGCHC	2 cut(s)	136, 382
Bsp1720I	GCTNAGC	2 cut(s)	313, 325
BspACI	CCGC	1 cut(s)	604
BspCNI	CTCAG	2 cut(s)	12, 403
BspLI	GGNNCC	4 cut(s)	133, 176, 292, 400
BspT107I	GGYRCC	2 cut(s)	131, 174
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	431
BssNI	GRCGYC	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	521
BstACI	GRCGYC	1 cut(s)	175
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	725
BstDEI	CTNAG	6 cut(s)	20, 313, 325, 411, 510, 694
BstF5I	GGATG	2 cut(s)	83, 176
BstH2I	RGCGCY	2 cut(s)	178, 458
BstHHI	GCGC	3 cut(s)	177, 371, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 412
BstNSI	RCATGY	2 cut(s)	193, 232
BstSLI	GKGCMC	2 cut(s)	136, 382
BstSNI	TACGTA	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	83, 176
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	2 cut(s)	74, 678
Cac8I	GCNNGC	1 cut(s)	725
CfoI	GCGC	3 cut(s)	177, 371, 457
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	302, 610
CviAII	CATG	6 cut(s)	190, 200, 229, 341, 403, 530
CviQI	GTAC	2 cut(s)	302, 610
DdeI	CTNAG	6 cut(s)	20, 313, 325, 411, 510, 694
DinI	GGCGCC	1 cut(s)	176
Eco105I	TACGTA	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	290
Eco47III	AGCGCT	1 cut(s)	456
Eco81I	CCTNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	269
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
FaeI	CATG	6 cut(s)	193, 203, 232, 344, 406, 533
FatI	CATG	6 cut(s)	189, 199, 228, 340, 402, 529
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	2 cut(s)	25, 604
FokI	GGATG	2 cut(s)	70, 183
Fsp4HI	GCNGC	2 cut(s)	25, 604
FspBI	CTAG	4 cut(s)	128, 354, 645, 671
GlaI	GCGC	3 cut(s)	176, 370, 456
GluI	GCNGC	2 cut(s)	25, 604
GsuI	CTGGAG	1 cut(s)	225
HaeII	RGCGCY	2 cut(s)	178, 458
HapII	CCGG	2 cut(s)	256, 549
HgaI	GACGC	1 cut(s)	463
HhaI	GCGC	3 cut(s)	177, 371, 457
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	6 cut(s)	193, 203, 232, 344, 406, 533
Hin6I	GCGC	3 cut(s)	175, 369, 455
HinP1I	GCGC	3 cut(s)	175, 369, 455
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	4 cut(s)	252, 350, 540, 675
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	256, 549
Hpy166II	GTNNAC	3 cut(s)	157, 226, 517
Hpy188I	TCNGA	2 cut(s)	284, 412
Hpy8I	GTNNAC	3 cut(s)	157, 226, 517
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	161, 248
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	27, 61, 114, 121, 189, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 412
HpyF3I	CTNAG	6 cut(s)	20, 313, 325, 411, 510, 694
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	6 cut(s)	193, 203, 232, 344, 406, 533
HspAI	GCGC	3 cut(s)	175, 369, 455
KasI	GGCGCC	1 cut(s)	174
KspAI	GTTAAC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	398, 462
LpnPI	CCDG	9 cut(s)	189, 203, 251, 269, 294, 303, 360, 412, 562
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	2 cut(s)	338, 380
MaeI	CTAG	4 cut(s)	128, 354, 645, 671
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	71
MboII	GAAGA	1 cut(s)	563
MfeI	CAATTG	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	136, 382
MluCI	AATT	5 cut(s)	30, 99, 269, 487, 587
Mly113I	GGCGCC	1 cut(s)	175
MnlI	CCTC	6 cut(s)	188, 305, 470, 530, 554, 594
MseI	TTAA	4 cut(s)	93, 225, 233, 639
MslI	CAYNNNNRTG	1 cut(s)	482
MspI	CCGG	2 cut(s)	256, 549
MunI	CAATTG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	377, 412
NarI	GGCGCC	1 cut(s)	175
NdeI	CATATG	1 cut(s)	712
NlaIII	CATG	6 cut(s)	193, 203, 232, 344, 406, 533
NlaIV	GGNNCC	4 cut(s)	133, 176, 292, 400
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	2 cut(s)	193, 232
PciI	ACATGT	1 cut(s)	228
PfeI	GAWTC	4 cut(s)	252, 350, 540, 675
PkrI	GCNGC	2 cut(s)	26, 605
PluTI	GGCGCC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	301
PpuMI	RGGWCCY	1 cut(s)	290
PscI	ACATGT	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	290
PspN4I	GGNNCC	4 cut(s)	133, 176, 292, 400
PspPI	GGNCC	1 cut(s)	290
PspPPI	RGGWCCY	1 cut(s)	290
RsaI	GTAC	2 cut(s)	303, 611
RsaNI	GTAC	2 cut(s)	302, 610
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	4 cut(s)	93, 225, 233, 639
SatI	GCNGC	2 cut(s)	25, 604
Sau96I	GGNCC	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	136, 382
SfaNI	GCATC	2 cut(s)	338, 380
SfoI	GGCGCC	1 cut(s)	176
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SnaBI	TACGTA	1 cut(s)	301
Sse9I	AATT	5 cut(s)	30, 99, 269, 487, 587
SsiI	CCGC	1 cut(s)	604
SspDI	GGCGCC	1 cut(s)	174
SspMI	CTAG	4 cut(s)	128, 354, 645, 671
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	1 cut(s)	303
TasI	AATT	5 cut(s)	30, 99, 269, 487, 587
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	606
TfiI	GAWTC	4 cut(s)	252, 350, 540, 675
Tru1I	TTAA	4 cut(s)	93, 225, 233, 639
Tru9I	TTAA	4 cut(s)	93, 225, 233, 639
TscAI	CASTG	2 cut(s)	74, 685
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	7 cut(s)	23, 33, 188, 203, 235, 268, 761
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	2 cut(s)	74, 685
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	3 cut(s)	30, 269, 487
XceI	RCATGY	2 cut(s)	193, 232
XspI	CTAG	4 cut(s)	128, 354, 645, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.