Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010293

Physical Location & Seq

Genomic Coordinates Forward (+)

58556785 .. 58560015

Gene Structure 3231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG402100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGGAAGGGAATGCCATACTCCGACGTCGAAAAGGGGCCAGAAAGGGGGCAAGAGAAGAGGCGGCACAGGAGTCGACCACCTCCGCCACAAATTTGCCCCCCACCAGAGAAGCCATGGTTTCCGTGGCTCGTGCCAGTCATATTTTCAGCCAATCTCATCATGTTCATCATCACCATGTATATCAACGACTGCCCGTCTCAAGAGAATCATCCTCGGTGCGTTTTGCCTTTCTTGAAGAGGTTCTCTTTCCAACCCTTCAAAGAAAACATCCTCCTTGGTCCTTCTGCACTCACTCTGCAAAAGCTAGGTGCCCTTGAACGGAACTTGGTGGTGGACGACGGGGAAGGATGGCGCCTCTTGTCTTGCATGTGGCTTCATGCTGGAGTTGTTCATCTGGTTGTTAACATGTTAAGCCTTCTATTCATAGGAATCCGGCTTGAGCAGGAATTCGGTTTCATCAGAATAGGACCCCTCTACGTACTTTCTGGATTAGCTGGAAGCTTAGCATCTATAAATCATGGAAAAGAATCTAGCGTATCAGTTGGCGCATCTGGGGCACTTTTTGGATTGTTGGGAGCCATGCTATCTGAGCTTTTTACAAACTGGACAATCTATACAAAGAAGGTAACCTTTGTTTTTCCTCTTTCTCTTGTTTTCAGTGACTCTCAGCTAGTAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

227

Amino Acids

25.34

Weight (kDa)

8.95

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	115 - 214	1.3e-31	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52580
fragaria_vesca	FvH4_6g29990 FvH4_6g29990
prunus_persica	Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136001 RchiOBHm_Chr2g0136011
rosa_laevigata	RLG00000019496
rosa_multiflora	Rmu_ssc0000343.1_g000028
rosa_roxburghii	Rroxscaffold_2G00108700
rosa_rugosa	Rorug02G0327300 Rorug02G0327400 Rorug02G0327500 Rorug02G0327600
rosa_samantha	Rh2AG379300 Rh2BG385900 Rh2CG364900 Rh2DG402100
rosa_wichuraiana	Rw2G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccB1I	GGYRCC	2 cut(s)	311, 354
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	2 cut(s)	64, 86
AcsI	RAATTY	2 cut(s)	93, 449
AcyI	GRCGYC	2 cut(s)	27, 355
AfaI	GTAC	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	47, 321
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	3 cut(s)	238, 262, 320
AhdI	GACNNNNNGTC	1 cut(s)	196
AluBI	AGCT	6 cut(s)	307, 497, 504, 595, 673, 681
AluI	AGCT	6 cut(s)	307, 497, 504, 595, 673, 681
Alw26I	GTCTC	1 cut(s)	204
AoxI	GGCC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	93, 449
Asp700I	GAANNNNTTC	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	357, 551
AspS9I	GGNCC	3 cut(s)	38, 281, 470
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	281, 470
BaeGI	GKGCMC	2 cut(s)	316, 562
BanI	GGYRCC	2 cut(s)	311, 354
BauI	CACGAG	1 cut(s)	131
BccI	CCATC	1 cut(s)	345
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	3 cut(s)	308, 534, 674
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	1 cut(s)	65
BlpI	GCTNAGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	66
Bme18I	GGWCC	2 cut(s)	281, 470
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmgT120I	GGNCC	3 cut(s)	38, 281, 470
BmiI	GGNNCC	5 cut(s)	39, 313, 356, 472, 580
BmsI	GCATC	2 cut(s)	518, 560
BpmI	CTGGAG	1 cut(s)	405
Bpu1102I	GCTNAGC	1 cut(s)	505
BpuEI	CTTGAG	2 cut(s)	186, 461
BsaAI	YACGTR	1 cut(s)	481
BsaHI	GRCGYC	2 cut(s)	27, 355
BsaJI	CCNNGG	4 cut(s)	116, 125, 215, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 321
Bse1I	ACTGG	2 cut(s)	137, 611
BseDI	CCNNGG	4 cut(s)	116, 125, 215, 277
BseGI	GGATG	3 cut(s)	211, 270, 356
BseLI	CCNNNNNNNGG	2 cut(s)	47, 321
BseMII	CTCAG	2 cut(s)	582, 683
BseNI	ACTGG	2 cut(s)	137, 611
BseSI	GKGCMC	2 cut(s)	316, 562
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	40
BshNI	GGYRCC	2 cut(s)	311, 354
BsiSI	CCGG	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	47, 321
BsmAI	GTCTC	1 cut(s)	204
BsmBI	CGTCTC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	316, 562
Bsp1720I	GCTNAGC	1 cut(s)	505
Bsp19I	CCATGG	1 cut(s)	116
BspACI	CCGC	2 cut(s)	64, 86
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	2 cut(s)	583, 682
BspLI	GGNNCC	5 cut(s)	39, 313, 356, 472, 580
BspT107I	GGYRCC	2 cut(s)	311, 354
BsrI	ACTGG	2 cut(s)	137, 611
BssECI	CCNNGG	4 cut(s)	116, 125, 215, 277
BssNI	GRCGYC	2 cut(s)	27, 355
BssSI	CACGAG	1 cut(s)	131
BssT1I	CCWWGG	2 cut(s)	116, 277
Bst2BI	CACGAG	1 cut(s)	131
Bst6I	CTCTTC	2 cut(s)	53, 233
BstACI	GRCGYC	2 cut(s)	27, 355
BstBAI	YACGTR	1 cut(s)	481
BstDEI	CTNAG	3 cut(s)	505, 591, 669
BstDSI	CCRYGG	2 cut(s)	116, 125
BstEII	GGTNACC	1 cut(s)	628
BstF5I	GGATG	3 cut(s)	211, 270, 356
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	2 cut(s)	357, 551
BstMAI	GTCTC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 592
BstNSI	RCATGY	2 cut(s)	373, 412
BstPI	GGTNACC	1 cut(s)	628
BstSLI	GKGCMC	2 cut(s)	316, 562
BstSNI	TACGTA	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	2 cut(s)	116, 125
BtsCI	GGATG	3 cut(s)	211, 270, 356
BtsIMutI	CAGTG	1 cut(s)	667
CfoI	GCGC	2 cut(s)	357, 551
Cfr13I	GGNCC	3 cut(s)	38, 281, 470
Csp6I	GTAC	1 cut(s)	482
CviAII	CATG	8 cut(s)	117, 163, 178, 370, 380, 409, 521, 583
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	3 cut(s)	505, 591, 669
DinI	GGCGCC	1 cut(s)	356
DriI	GACNNNNNGTC	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	53, 233
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	2 cut(s)	53, 233
EciI	GGCGGA	1 cut(s)	75
Eco105I	TACGTA	1 cut(s)	481
Eco130I	CCWWGG	2 cut(s)	116, 277
Eco47I	GGWCC	2 cut(s)	281, 470
Eco91I	GGTNACC	1 cut(s)	628
EcoO109I	RGGNCCY	1 cut(s)	470
EcoO65I	GGTNACC	1 cut(s)	628
EcoRI	GAATTC	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	116, 277
EgeI	GGCGCC	1 cut(s)	356
EheI	GGCGCC	1 cut(s)	356
ErhI	CCWWGG	2 cut(s)	116, 277
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	8 cut(s)	120, 166, 181, 373, 383, 412, 524, 586
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FatI	CATG	8 cut(s)	116, 162, 177, 369, 379, 408, 520, 582
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	3 cut(s)	198, 257, 363
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	3 cut(s)	308, 534, 674
GlaI	GCGC	2 cut(s)	356, 550
GluI	GCNGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	405
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	436
HhaI	GCGC	2 cut(s)	357, 551
Hin1I	GRCGYC	2 cut(s)	27, 355
Hin1II	CATG	8 cut(s)	120, 166, 181, 373, 383, 412, 524, 586
Hin6I	GCGC	2 cut(s)	355, 549
HinP1I	GCGC	2 cut(s)	355, 549
HincII	GTYRAC	2 cut(s)	77, 406
HindII	GTYRAC	2 cut(s)	77, 406
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	5 cut(s)	73, 208, 432, 530, 665
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	3 cut(s)	77, 337, 406
Hpy188I	TCNGA	3 cut(s)	25, 464, 592
Hpy188III	TCNNGA	3 cut(s)	203, 235, 489
Hpy8I	GTNNAC	3 cut(s)	77, 337, 406
Hpy99I	CGWCG	3 cut(s)	29, 32, 344
HpyAV	CCTTC	5 cut(s)	268, 294, 341, 428, 619
HpyCH4IV	ACGT	2 cut(s)	27, 480
HpyCH4V	TGCA	3 cut(s)	290, 301, 369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 592
HpyF3I	CTNAG	3 cut(s)	505, 591, 669
HpySE526I	ACGT	2 cut(s)	27, 480
Hsp92I	GRCGYC	2 cut(s)	27, 355
Hsp92II	CATG	8 cut(s)	120, 166, 181, 373, 383, 412, 524, 586
HspAI	GCGC	2 cut(s)	355, 549
KasI	GGCGCC	1 cut(s)	354
KspAI	GTTAAC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	578
LweI	GCATC	2 cut(s)	518, 560
MaeI	CTAG	3 cut(s)	308, 534, 674
MaeII	ACGT	2 cut(s)	27, 480
MaeIII	GTNAC	2 cut(s)	628, 662
MboII	GAAGA	2 cut(s)	70, 250
MhlI	GDGCHC	2 cut(s)	316, 562
MluCI	AATT	2 cut(s)	93, 449
Mly113I	GGCGCC	1 cut(s)	355
MlyI	GAGTC	2 cut(s)	82, 659
MmeI	TCCRAC	2 cut(s)	48, 277
MnlI	CCTC	8 cut(s)	54, 93, 225, 234, 284, 368, 485, 654
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	2 cut(s)	405, 413
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	1 cut(s)	436
Mva1269I	GAATGC	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	557, 592
NarI	GGCGCC	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	116
NlaIII	CATG	8 cut(s)	120, 166, 181, 373, 383, 412, 524, 586
NlaIV	GGNNCC	5 cut(s)	39, 313, 356, 472, 580
NmuCI	GTSAC	1 cut(s)	662
NspI	RCATGY	2 cut(s)	373, 412
PciI	ACATGT	1 cut(s)	408
PctI	GAATGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	208, 432, 530
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	2 cut(s)	81, 659
PluTI	GGCGCC	1 cut(s)	358
PpsI	GAGTC	2 cut(s)	81, 659
Ppu21I	YACGTR	1 cut(s)	481
PpuMI	RGGWCCY	1 cut(s)	470
PscI	ACATGT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	470
PspEI	GGTNACC	1 cut(s)	628
PspN4I	GGNNCC	5 cut(s)	39, 313, 356, 472, 580
PspPI	GGNCC	3 cut(s)	38, 281, 470
PspPPI	RGGWCCY	1 cut(s)	470
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
RseI	CAYNNNNRTG	1 cut(s)	176
SalI	GTCGAC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	405, 413
SatI	GCNGC	1 cut(s)	65
Sau96I	GGNCC	3 cut(s)	38, 281, 470
SchI	GAGTC	2 cut(s)	82, 659
SduI	GDGCHC	2 cut(s)	316, 562
SfaNI	GCATC	2 cut(s)	518, 560
SfoI	GGCGCC	1 cut(s)	356
SinI	GGWCC	2 cut(s)	281, 470
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	2 cut(s)	201, 440
SmoI	CTYRAG	2 cut(s)	201, 440
SnaBI	TACGTA	1 cut(s)	481
Sse9I	AATT	2 cut(s)	93, 449
SsiI	CCGC	2 cut(s)	64, 86
SspDI	GGCGCC	1 cut(s)	354
SspMI	CTAG	3 cut(s)	308, 534, 674
StyI	CCWWGG	2 cut(s)	116, 277
TaiI	ACGT	2 cut(s)	30, 483
TaqI	TCGA	2 cut(s)	30, 76
TasI	AATT	2 cut(s)	93, 449
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	3 cut(s)	208, 432, 530
Tru1I	TTAA	2 cut(s)	405, 413
Tru9I	TTAA	2 cut(s)	405, 413
TscAI	CASTG	1 cut(s)	667
TseFI	GTSAC	1 cut(s)	662
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	5 cut(s)	157, 368, 383, 415, 448
TspGWI	ACGGA	2 cut(s)	114, 337
TspRI	CASTG	1 cut(s)	667
VpaK11BI	GGWCC	2 cut(s)	281, 470
XapI	RAATTY	2 cut(s)	93, 449
XceI	RCATGY	2 cut(s)	373, 412
XcmI	CCANNNNNNNNNTGG	2 cut(s)	114, 123
XmiI	GTMKAC	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	3 cut(s)	308, 534, 674
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.