AT1G52600

signal peptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012805
Physical Location & Seq
Forward (+)
19590434 .. 19592731
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52600.1

Sequence Viewer

Length: 543 bp
ATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTCAGATTCGTCAGCTTTTCACTCAGGCCATCAGTCTAGGGATGATTGTCACATCTGCTTTGATCATATGGAAAGCTTTGATGTGTGTCACTGGAAGCGAATCTCCGGTGGTGGTTGTTCTCTCTGGAAGCATGGAACCCGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAAGACCCGATTCGAGCAGGTGAAATTGTTGTTTTCAATGTTGATGGTCGTGATATTCCCATTGTCCATCGTGTCATTAAGGTTCACGAAAGGGAAAATACAGGAGAAGTTGATGTTCTAACGAAAGGTGACAATAACTATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCATATAATGGGTCGTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACAGAAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACGTCAAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

180

Amino Acids

20.02

Weight (kDa)

6.59

Isoelectric Point (pI)

20.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S24 PF00717 35 - 106 1.6e-09 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52600
fragaria_vesca FvH4_6g30010 FvH4_7g29810
malus_domestica MD00G1130100.v1.1 MD17G1208500.v1.1
prunus_persica Prupe.3G083100_v2.0.a1 Prupe.3G083100_v2.0.a1
pyrus_communis pycom09g13940 pycom17g21120
rosa_chinensis RchiOBHm_Chr2g0136041
rosa_laevigata RLG00000019498
rosa_multiflora Rmu_sc0011078.1_g000006
rosa_roxburghii Rroxscaffold_2G00108630
rosa_rugosa Rorug02G0327800
rosa_samantha Rh2AG379500 Rh2BG386000 Rh2CG365400
rosa_wichuraiana Rw2G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 527
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 227
AclWI GGATC 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 1 cut(s) 256
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 3 cut(s) 55, 116, 394
AluI AGCT 3 cut(s) 55, 116, 394
AlwI GGATC 1 cut(s) 17
AoxI GGCC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 251, 359, 469
BccI CCATC 4 cut(s) 77, 257, 294, 447
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse1I ACTGG 1 cut(s) 136
BseGI GGATG 2 cut(s) 87, 458
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 136
BshFI GGCC 1 cut(s) 68
BsiSI CCGG 2 cut(s) 146, 180
BslI CCNNNNNNNGG 1 cut(s) 449
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 9, 102
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 136
BssMI GATC 2 cut(s) 9, 102
Bst4CI ACNGT 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 87, 458
BstKTI GATC 2 cut(s) 12, 105
BstMBI GATC 2 cut(s) 9, 102
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 21
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 87, 458
BtsIMutI CAGTG 1 cut(s) 129
BveI ACCTGC 1 cut(s) 227
CciI TCATGA 1 cut(s) 468
CviAII CATG 3 cut(s) 172, 214, 469
CviJI RGCY 6 cut(s) 55, 68, 116, 394, 400, 481
CviKI_1 RGCY 6 cut(s) 55, 68, 116, 394, 400, 481
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 11, 104
DpnII GATC 2 cut(s) 9, 102
Eco57I CTGAAG 1 cut(s) 405
FaeI CATG 3 cut(s) 175, 217, 472
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FatI CATG 3 cut(s) 171, 213, 468
FauNDI CATATG 1 cut(s) 107
FbaI TGATCA 1 cut(s) 102
FokI GGATG 2 cut(s) 94, 465
FspBI CTAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 68
HapII CCGG 2 cut(s) 146, 180
Hin1II CATG 3 cut(s) 175, 217, 472
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 4 cut(s) 26, 46, 140, 229
HpaII CCGG 2 cut(s) 146, 180
HphI GGTGA 3 cut(s) 251, 359, 469
Hpy166II GTNNAC 2 cut(s) 304, 518
Hpy188I TCNGA 2 cut(s) 14, 45
Hpy188III TCNNGA 4 cut(s) 165, 269, 305, 469
Hpy8I GTNNAC 2 cut(s) 304, 518
HpyAV CCTTC 1 cut(s) 380
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 2 cut(s) 211, 509
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 3 cut(s) 175, 217, 472
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 2 cut(s) 9, 102
LpnPI CCDG 7 cut(s) 50, 117, 150, 159, 193, 222, 306
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 4 cut(s) 88, 127, 347, 457
MalI GATC 2 cut(s) 11, 104
MboI GATC 2 cut(s) 9, 102
MluCI AATT 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 430
MnlI CCTC 1 cut(s) 183
MseI TTAA 2 cut(s) 186, 297
MspI CCGG 2 cut(s) 146, 180
MspR9I CCNGG 1 cut(s) 180
NciI CCSGG 1 cut(s) 180
NdeI CATATG 1 cut(s) 107
NdeII GATC 2 cut(s) 9, 102
NlaIII CATG 3 cut(s) 175, 217, 472
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 4 cut(s) 88, 127, 347, 457
PagI TCATGA 1 cut(s) 468
PaqCI CACCTGC 1 cut(s) 227
PfeI GAWTC 4 cut(s) 26, 46, 140, 229
PsiI TTATAA 1 cut(s) 527
PspN4I GGNNCC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 186, 297
Sau3AI GATC 2 cut(s) 9, 102
ScrFI CCNGG 1 cut(s) 180
SetI ASST 8 cut(s) 57, 118, 241, 303, 349, 396, 508, 533
SfcI CTRYAG 1 cut(s) 21
Sse9I AATT 1 cut(s) 243
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 533
TaqI TCGA 2 cut(s) 232, 406
TasI AATT 1 cut(s) 243
TfiI GAWTC 4 cut(s) 26, 46, 140, 229
Tru1I TTAA 2 cut(s) 186, 297
Tru9I TTAA 2 cut(s) 186, 297
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 4 cut(s) 88, 127, 347, 457
Tsp45I GTSAC 4 cut(s) 88, 127, 347, 457
TspDTI ATGAA 1 cut(s) 392
TspRI CASTG 1 cut(s) 136
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.