Rroxscaffold_2G00108630

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012805
Physical Location & Seq
Reverse (-)
32673257 .. 32677541
4285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108630.1

Sequence Viewer

Length: 693 bp
ATGGGTTGGATCGGCGAGACAGTGGACTCCGTCAAATCCCTGCAGATCCGGCAGGTCCTCACCCAGGCCGTCAGTCTCGGTATGATTGTTACATCTGCACTTATAATATGGAAGGCTTTGATGTGCGCTACCGGCAGTGAATCTCCTGTTGTTGTTGTTTTATCTGGAAGTATGGAACCGGGCTTCAGGAGGGGGGACATTTTGTTCTTGCACATGAGTAAAGAACCCATTCGTGCTGGAGAAATTGTTGTCTTTAATGTTGACGGCCGTGAGATTCCAATCGTCCATCGCGTCATTAAGGTTCATGAAAGAGAAGATACTGGAGAAGTAGATGTCCTCACAAAAGGTGCCAGTTTCTTCAATAAACCGGAACAATTGCCTTTTGCATGCTATGCTTACTTTACCACACTATTCACCCCTTCTGTATATTTCTCAGGAGATAACAATTATGGGGATGACAGACTTCTGTATGCTCAGGGTCAGTTGTGGCTCCAACGGCACCATATTATGGGTAGAGCTGTGGGGTTCTTACCCTATGTTGGCTGGGTGACAATTATCATGACTGAAAAGCCAATTATTAAGAGCACCAAAACTGGAGAACTGTTGGAGAAAGGGGGCCCTGCACGATTGAAGTCACTTGAGCCTCGGGGATCATCATGTGCTATAGCCTATAGGCACATGGGGCGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

230

Amino Acids

25.53

Weight (kDa)

8.75

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S24 PF00717 36 - 100 8.1e-09 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52600
fragaria_vesca FvH4_6g30010 FvH4_7g29810
malus_domestica MD00G1130100.v1.1 MD17G1208500.v1.1
prunus_persica Prupe.3G083100_v2.0.a1 Prupe.3G083100_v2.0.a1
pyrus_communis pycom09g13940 pycom17g21120
rosa_chinensis RchiOBHm_Chr2g0136041
rosa_laevigata RLG00000019498
rosa_multiflora Rmu_sc0011078.1_g000006
rosa_roxburghii Rroxscaffold_2G00108630
rosa_rugosa Rorug02G0327800
rosa_samantha Rh2AG379500 Rh2BG386000 Rh2CG365400
rosa_wichuraiana Rw2G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 2 cut(s) 347, 498
AccB7I CCANNNNNTGG 1 cut(s) 508
AccII CGCG 1 cut(s) 291
AclWI GGATC 3 cut(s) 17, 40, 658
AcoI YGGCCR 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 169
AfiI CCNNNNNNNGG 3 cut(s) 64, 508, 539
AgsI TTSAA 2 cut(s) 361, 631
AjnI CCWGG 1 cut(s) 63
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 2 cut(s) 518, 689
AluI AGCT 2 cut(s) 518, 689
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 2 cut(s) 11, 80
AlwI GGATC 3 cut(s) 17, 40, 658
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 3 cut(s) 66, 265, 616
ApaI GGGCCC 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 3 cut(s) 55, 616, 617
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 52, 406, 559
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 620
BanI GGYRCC 2 cut(s) 347, 498
BanII GRGCYC 1 cut(s) 620
Bbv12I GWGCWC 1 cut(s) 587
BccI CCATC 1 cut(s) 294
BceAI ACGGC 4 cut(s) 53, 252, 280, 512
BciT130I CCWGG 1 cut(s) 65
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 11, 80
BfmI CTRYAG 3 cut(s) 41, 663, 670
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 65, 180
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 3 cut(s) 55, 616, 617
BmiI GGNNCC 6 cut(s) 177, 349, 491, 500, 617, 618
BmrFI CCNGG 2 cut(s) 65, 180
BpmI CTGGAG 3 cut(s) 258, 342, 615
Bpu10I CCTNAGC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 659
BpuMI CCSGG 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 63, 644
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 508, 539
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 3 cut(s) 325, 351, 598
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 63, 644
BseGI GGATG 1 cut(s) 460
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 3 cut(s) 64, 508, 539
BseMII CTCAG 2 cut(s) 447, 488
BseNI ACTGG 3 cut(s) 325, 351, 598
BseSI GKGCMC 1 cut(s) 620
BseX3I CGGCCG 1 cut(s) 265
BseYI CCCAGC 1 cut(s) 543
BsgI GTGCAG 2 cut(s) 81, 606
Bsh1236I CGCG 1 cut(s) 291
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 3 cut(s) 68, 267, 618
BshNI GGYRCC 2 cut(s) 347, 498
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 587
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 4 cut(s) 49, 132, 179, 368
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 64, 508, 539
BsmAI GTCTC 2 cut(s) 11, 80
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 3 cut(s) 68, 267, 618
BsoBI CYCGRG 1 cut(s) 645
Bsp120I GGGCCC 1 cut(s) 616
Bsp1286I GDGCHC 2 cut(s) 587, 620
Bsp143I GATC 3 cut(s) 9, 45, 650
BspANI GGCC 3 cut(s) 68, 267, 618
BspCNI CTCAG 2 cut(s) 446, 487
BspFNI CGCG 1 cut(s) 291
BspHI TCATGA 2 cut(s) 304, 558
BspLI GGNNCC 6 cut(s) 177, 349, 491, 500, 617, 618
BspMAI CTGCAG 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 3 cut(s) 17, 40, 658
BspT107I GGYRCC 2 cut(s) 347, 498
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 3 cut(s) 325, 351, 598
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 63, 644
BssMI GATC 3 cut(s) 9, 45, 650
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 22, 603
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 388, 687
BstDEI CTNAG 2 cut(s) 433, 474
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 1 cut(s) 291
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 3 cut(s) 12, 48, 653
BstMAI GTCTC 2 cut(s) 11, 80
BstMBI GATC 3 cut(s) 9, 45, 650
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 5 cut(s) 49, 132, 392, 496, 682
BstNI CCWGG 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 390
BstSCI CCNGG 2 cut(s) 63, 178
BstSFI CTRYAG 3 cut(s) 41, 663, 670
BstSLI GKGCMC 1 cut(s) 620
BstUI CGCG 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BstZI CGGCCG 1 cut(s) 265
BsuRI GGCC 3 cut(s) 68, 267, 618
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 27, 142
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 388, 687
CciI TCATGA 2 cut(s) 304, 558
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 3 cut(s) 55, 616, 617
CseI GACGC 1 cut(s) 280
CviAII CATG 6 cut(s) 214, 305, 387, 559, 657, 679
DdeI CTNAG 2 cut(s) 433, 474
DpnI GATC 3 cut(s) 11, 47, 652
DpnII GATC 3 cut(s) 9, 45, 650
EaeI YGGCCR 1 cut(s) 265
EagI CGGCCG 1 cut(s) 265
EclXI CGGCCG 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 55
Eco52I CGGCCG 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 645
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 3 cut(s) 55, 616, 617
EcoRII CCWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 620
FaeI CATG 6 cut(s) 217, 308, 390, 562, 660, 682
FaqI GGGAC 1 cut(s) 209
FatI CATG 6 cut(s) 213, 304, 386, 558, 656, 678
FokI GGATG 1 cut(s) 467
FriOI GRGCYC 1 cut(s) 620
GlaI GCGC 1 cut(s) 127
GsaI CCCAGC 1 cut(s) 547
GsuI CTGGAG 3 cut(s) 258, 342, 615
HaeIII GGCC 3 cut(s) 68, 267, 618
HapII CCGG 4 cut(s) 49, 132, 179, 368
HgaI GACGC 1 cut(s) 280
HhaI GCGC 1 cut(s) 128
Hin1II CATG 6 cut(s) 217, 308, 390, 562, 660, 682
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 3 cut(s) 26, 140, 274
HpaII CCGG 4 cut(s) 49, 132, 179, 368
HphI GGTGA 3 cut(s) 52, 406, 559
Hpy166II GTNNAC 2 cut(s) 25, 262
Hpy188III TCNNGA 5 cut(s) 165, 187, 305, 435, 559
Hpy8I GTNNAC 2 cut(s) 25, 262
HpyAV CCTTC 2 cut(s) 106, 429
HpyCH4III ACNGT 2 cut(s) 22, 603
HpyCH4V TGCA 5 cut(s) 43, 98, 211, 386, 623
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 132, 392, 496, 682
HpyF3I CTNAG 2 cut(s) 433, 474
Hsp92II CATG 6 cut(s) 217, 308, 390, 562, 660, 682
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 3 cut(s) 9, 45, 650
LmnI GCTCC 1 cut(s) 495
MaeIII GTNAC 3 cut(s) 88, 547, 633
MalI GATC 3 cut(s) 11, 47, 652
MboI GATC 3 cut(s) 9, 45, 650
MboII GAAGA 2 cut(s) 326, 349
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 587, 620
MluCI AATT 5 cut(s) 243, 374, 445, 552, 573
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 517, 585
MnlI CCTC 4 cut(s) 68, 183, 347, 654
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 4 cut(s) 255, 297, 579, 691
MspI CCGG 4 cut(s) 49, 132, 179, 368
MspR9I CCNGG 2 cut(s) 65, 180
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 5 cut(s) 49, 132, 392, 496, 682
NciI CCSGG 1 cut(s) 180
NdeII GATC 3 cut(s) 9, 45, 650
NlaIII CATG 6 cut(s) 217, 308, 390, 562, 660, 682
NlaIV GGNNCC 6 cut(s) 177, 349, 491, 500, 617, 618
NmuCI GTSAC 2 cut(s) 547, 633
NspI RCATGY 1 cut(s) 390
PaeI GCATGC 1 cut(s) 390
PagI TCATGA 2 cut(s) 304, 558
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 140, 274
PflFI GACNNNGTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 508
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 55
PsiI TTATAA 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 543
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 6 cut(s) 177, 349, 491, 500, 617, 618
PspOMI GGGCCC 1 cut(s) 616
PspPI GGNCC 3 cut(s) 55, 616, 617
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 29
SaqAI TTAA 4 cut(s) 255, 297, 579, 691
Sau3AI GATC 3 cut(s) 9, 45, 650
Sau96I GGNCC 3 cut(s) 55, 616, 617
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 65, 180
SduI GDGCHC 2 cut(s) 587, 620
SetI ASST 5 cut(s) 57, 303, 349, 520, 691
SfcI CTRYAG 3 cut(s) 41, 663, 670
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
SphI GCATGC 1 cut(s) 390
Sse9I AATT 5 cut(s) 243, 374, 445, 552, 573
StyD4I CCNGG 2 cut(s) 63, 178
TaaI ACNGT 2 cut(s) 22, 603
TasI AATT 5 cut(s) 243, 374, 445, 552, 573
TfiI GAWTC 2 cut(s) 140, 274
Tru1I TTAA 4 cut(s) 255, 297, 579, 691
Tru9I TTAA 4 cut(s) 255, 297, 579, 691
TscAI CASTG 2 cut(s) 27, 142
TseFI GTSAC 2 cut(s) 547, 633
Tsp45I GTSAC 2 cut(s) 547, 633
TspDTI ATGAA 2 cut(s) 293, 321
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 2 cut(s) 27, 142
Tth111I GACNNNGTC 1 cut(s) 29
Van91I CCANNNNNTGG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 62
XceI RCATGY 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.