Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0012805

Physical Location & Seq

Genomic Coordinates Reverse (-)

19603326 .. 19606069

Gene Structure 2744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g21120.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGTTGGATCGGTGAGAGCGTAGACTCCATCAAATCCCTGCAGATTCGGCAGGTCCTCACTCAGGCCGTCAGTCTCGGTATGATTGTCACATCTGCGCTTATAATATGGAAGGCGTTAATGTGTGTTACCAGCAGTGAGTCTCCCGTTGTTGTTGTTTTGTCTGGAAGTATGGAACCTGGTTTCAAGAGGGGGGACATTTTGTTCTTGCACATGAGTAAAGAACCCATTCGTGCAGGAGAAATTGTTGTATTTAATATTGATGGCCGTGAAATTCCAATTGTCCATCGCGTCATTAAGGTTCATGAACGAAAAGATGCTGGAGAAGTTGATGTCCTAACAAAAGGAGATAACAATTATGGGGATGACAGGCTTCTTTATGCTAACGGTCAGCTGTGGCTACAACGGCATCATATCATGGGCAGAGCTGTAGGGTTTTTACCTTATGTCGGGTGGGTGACAATTATCATGACTGAAAAGCCTATTATTAAGTATATTCTAATTGGCGCGTTGGGGTTGCTTGTTATAACATCAAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

181

Amino Acids

19.96

Weight (kDa)

7.89

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52600
fragaria_vesca	FvH4_6g30010 FvH4_7g29810
malus_domestica	MD00G1130100.v1.1 MD17G1208500.v1.1
prunus_persica	Prupe.3G083100_v2.0.a1 Prupe.3G083100_v2.0.a1
pyrus_communis	pycom09g13940 pycom17g21120
rosa_chinensis	RchiOBHm_Chr2g0136041
rosa_laevigata	RLG00000019498
rosa_multiflora	Rmu_sc0011078.1_g000006
rosa_roxburghii	Rroxscaffold_2G00108630
rosa_rugosa	Rorug02G0327800
rosa_samantha	Rh2AG379500 Rh2BG386000 Rh2CG365400
rosa_wichuraiana	Rw2G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	104, 527
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	2 cut(s)	291, 509
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	64, 449
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	178
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	2 cut(s)	394, 428
AluI	AGCT	2 cut(s)	394, 428
Alw26I	GTCTC	2 cut(s)	80, 147
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	2 cut(s)	66, 265
ApoI	RAATTY	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	100, 509
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	26, 469
AvaII	GGWCC	1 cut(s)	55
BccI	CCATC	3 cut(s)	38, 257, 294
BceAI	ACGGC	3 cut(s)	53, 252, 422
BciT130I	CCWGG	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	80, 147
BfmI	CTRYAG	2 cut(s)	41, 429
BfuAI	ACCTGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	307, 418
BpmI	CTGGAG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 449
BseBI	CCWGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	2 cut(s)	64, 449
BseMII	CTCAG	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	255
Bsh1236I	CGCG	2 cut(s)	291, 509
BshFI	GGCC	2 cut(s)	68, 267
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	64, 449
BsmAI	GTCTC	2 cut(s)	80, 147
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	68, 267
Bsp143I	GATC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	68, 267
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	2 cut(s)	291, 509
BspHI	TCATGA	2 cut(s)	304, 468
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	17
BssMI	GATC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	63
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	2 cut(s)	291, 509
BstHHI	GCGC	2 cut(s)	100, 509
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	2 cut(s)	80, 147
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 406
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	2 cut(s)	41, 429
BstUI	CGCG	2 cut(s)	291, 509
BsuRI	GGCC	2 cut(s)	68, 267
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
BveI	ACCTGC	1 cut(s)	43
CciI	TCATGA	2 cut(s)	304, 468
CfoI	GCGC	2 cut(s)	100, 509
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	280
CsiI	ACCWGGT	1 cut(s)	178
CviAII	CATG	4 cut(s)	214, 305, 418, 469
CviJI	RGCY	7 cut(s)	68, 267, 373, 394, 400, 428, 481
CviKI_1	RGCY	7 cut(s)	68, 267, 373, 394, 400, 428, 481
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	178
FaeI	CATG	4 cut(s)	217, 308, 421, 472
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	4 cut(s)	213, 304, 417, 468
FblI	GTMKAC	1 cut(s)	24
FokI	GGATG	1 cut(s)	377
GlaI	GCGC	2 cut(s)	99, 508
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	68, 267
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	2 cut(s)	100, 509
Hin1II	CATG	4 cut(s)	217, 308, 421, 472
Hin6I	GCGC	2 cut(s)	98, 507
HinP1I	GCGC	2 cut(s)	98, 507
HinfI	GANTC	3 cut(s)	26, 46, 140
HphI	GGTGA	2 cut(s)	26, 469
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	4 cut(s)	165, 187, 305, 469
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	3 cut(s)	43, 211, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 406
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	217, 308, 421, 472
HspAI	GCGC	2 cut(s)	98, 507
Kzo9I	GATC	1 cut(s)	9
LweI	GCATC	2 cut(s)	307, 418
MabI	ACCWGGT	1 cut(s)	178
MaeIII	GTNAC	3 cut(s)	88, 127, 457
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MfeI	CAATTG	1 cut(s)	279
MluCI	AATT	6 cut(s)	243, 273, 279, 355, 462, 501
MlyI	GAGTC	2 cut(s)	20, 149
MnlI	CCTC	2 cut(s)	68, 183
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	4 cut(s)	119, 255, 297, 489
MspA1I	CMGCKG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	180
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	2 cut(s)	291, 509
MwoI	GCNNNNNNNGC	2 cut(s)	49, 406
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	4 cut(s)	217, 308, 421, 472
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	88, 457
PagI	TCATGA	2 cut(s)	304, 468
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	46
PleI	GAGTC	2 cut(s)	20, 148
PpsI	GAGTC	2 cut(s)	20, 148
PpuMI	RGGWCCY	1 cut(s)	55
PsiI	TTATAA	2 cut(s)	104, 527
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	394
SaqAI	TTAA	4 cut(s)	119, 255, 297, 489
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	20, 149
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	6 cut(s)	57, 181, 303, 396, 430, 445
SexAI	ACCWGGT	1 cut(s)	178
SfaNI	GCATC	2 cut(s)	307, 418
SfcI	CTRYAG	2 cut(s)	41, 429
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	6 cut(s)	243, 273, 279, 355, 462, 501
SspI	AATATT	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	389
TasI	AATT	6 cut(s)	243, 273, 279, 355, 462, 501
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	4 cut(s)	119, 255, 297, 489
Tru9I	TTAA	4 cut(s)	119, 255, 297, 489
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	88, 457
Tsp45I	GTSAC	2 cut(s)	88, 457
TspDTI	ATGAA	2 cut(s)	293, 321
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.