Prupe.3G083100_v2.0.a1

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012805
Physical Location & Seq
Reverse (-)
6152197 .. 6155980
3784 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G083100.1

Sequence Viewer

Length: 543 bp
ATGGATTGGATCGGTGAGACCGTGGACTCTATCAAATCCCTTCAGATCCGGCAGGTCCTCACCCAGGCCGTCAGTCTCGGTATGATTGTTACATCTGCTCTTATAATATGGAAGGCATTGATGTGCGTTACCGGCAGTGAATCTCCTGTTGTTGTTGTTTTGTCTGGAAGTATGGAACCCGGTTTCAAGAGGGGGGATATTTTGTTCTTGCACATGAGTAAAGAGCCCATTCGTGCAGGAGAAATTGTTGTTTTTAATGTTGATGGCCGTGAAATTCCAATTGTCCATCGTGTCATTAAGGTTCATGAACGACAAGATACTGGAGAAGTTGATGTCCTTACAAAAGGAGATAACAATTATGGGGATGACAGGCTTCTGTATGCTCATGGTCAGCTGTGGCTTCAACGGCATCATATCATGGGTAGAGCGGTGGGGTTTTTACCTTATGTTGGCTGGGTAACAATTATCATGACTGAAAAGCCTATTATTAAGTATATTCTAATTGGCGCATTGGGGTTGCTTGTTATAACATCAAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

181

Amino Acids

20.04

Weight (kDa)

6.59

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52600
fragaria_vesca FvH4_6g30010 FvH4_7g29810
malus_domestica MD00G1130100.v1.1 MD17G1208500.v1.1
prunus_persica Prupe.3G083100_v2.0.a1 Prupe.3G083100_v2.0.a1
pyrus_communis pycom09g13940 pycom17g21120
rosa_chinensis RchiOBHm_Chr2g0136041
rosa_laevigata RLG00000019498
rosa_multiflora Rmu_sc0011078.1_g000006
rosa_roxburghii Rroxscaffold_2G00108630
rosa_rugosa Rorug02G0327800
rosa_samantha Rh2AG379500 Rh2BG386000 Rh2CG365400
rosa_wichuraiana Rw2G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 104, 527
Acc36I ACCTGC 1 cut(s) 43
AccBSI CCGCTC 1 cut(s) 428
AciI CCGC 1 cut(s) 428
AclWI GGATC 2 cut(s) 17, 40
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 64, 449
AgsI TTSAA 2 cut(s) 187, 404
AjnI CCWGG 1 cut(s) 63
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 1 cut(s) 394
AluI AGCT 1 cut(s) 394
Alw26I GTCTC 2 cut(s) 11, 80
AlwI GGATC 2 cut(s) 17, 40
AoxI GGCC 2 cut(s) 66, 265
ApoI RAATTY 1 cut(s) 273
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 26, 52
AvaII GGWCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 228
BccI CCATC 2 cut(s) 257, 294
BceAI ACGGC 3 cut(s) 53, 252, 422
BciT130I CCWGG 1 cut(s) 65
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 11, 80
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 65, 180
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 2 cut(s) 65, 180
BmsI GCATC 1 cut(s) 418
BpmI CTGGAG 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 21, 63
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 449
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 325
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 21, 63
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 64, 449
BseNI ACTGG 1 cut(s) 325
BseYI CCCAGC 1 cut(s) 453
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 2 cut(s) 68, 267
BsiSI CCGG 3 cut(s) 49, 132, 180
BslI CCNNNNNNNGG 2 cut(s) 64, 449
BsmAI GTCTC 2 cut(s) 11, 80
BsnI GGCC 2 cut(s) 68, 267
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 9, 45
BspACI CCGC 1 cut(s) 428
BspANI GGCC 2 cut(s) 68, 267
BspHI TCATGA 2 cut(s) 304, 468
BspLI GGNNCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 17, 40
BspTNI GGTCTC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 428
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 21, 63
BssMI GATC 2 cut(s) 9, 45
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 22
BstDSI CCRYGG 1 cut(s) 21
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 370
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 2 cut(s) 12, 48
BstMAI GTCTC 2 cut(s) 11, 80
BstMBI GATC 2 cut(s) 9, 45
BstMWI GCNNNNNNNGC 2 cut(s) 132, 406
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 2 cut(s) 63, 178
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 2 cut(s) 68, 267
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 43
CciI TCATGA 2 cut(s) 304, 468
CfoI GCGC 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 5 cut(s) 214, 305, 386, 418, 469
CviJI RGCY 8 cut(s) 68, 226, 267, 373, 394, 400, 453, 481
CviKI_1 RGCY 8 cut(s) 68, 226, 267, 373, 394, 400, 453, 481
DpnI GATC 2 cut(s) 11, 47
DpnII GATC 2 cut(s) 9, 45
EaeI YGGCCR 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 26
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 5 cut(s) 217, 308, 389, 421, 472
FatI CATG 5 cut(s) 213, 304, 385, 417, 468
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 228
GlaI GCGC 1 cut(s) 508
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 68, 267
HapII CCGG 3 cut(s) 49, 132, 180
HhaI GCGC 1 cut(s) 509
Hin1II CATG 5 cut(s) 217, 308, 389, 421, 472
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HinfI GANTC 2 cut(s) 26, 140
HpaII CCGG 3 cut(s) 49, 132, 180
HphI GGTGA 2 cut(s) 26, 52
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 4 cut(s) 165, 187, 305, 469
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 50, 106
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 211, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 406
Hsp92II CATG 5 cut(s) 217, 308, 389, 421, 472
HspAI GCGC 1 cut(s) 507
Kzo9I GATC 2 cut(s) 9, 45
LweI GCATC 1 cut(s) 418
MaeIII GTNAC 3 cut(s) 88, 127, 457
MalI GATC 2 cut(s) 11, 47
MbiI CCGCTC 1 cut(s) 428
MboI GATC 2 cut(s) 9, 45
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 6 cut(s) 243, 273, 279, 355, 462, 501
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 2 cut(s) 68, 183
MseI TTAA 3 cut(s) 255, 297, 489
MslI CAYNNNNRTG 1 cut(s) 121
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 3 cut(s) 49, 132, 180
MspR9I CCNGG 2 cut(s) 65, 180
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 132, 406
NciI CCSGG 1 cut(s) 180
NdeII GATC 2 cut(s) 9, 45
NlaIII CATG 5 cut(s) 217, 308, 389, 421, 472
NlaIV GGNNCC 1 cut(s) 177
PagI TCATGA 2 cut(s) 304, 468
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PfeI GAWTC 1 cut(s) 140
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 55
PsiI TTATAA 2 cut(s) 104, 527
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PsuI RGATCY 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 121
SaqAI TTAA 3 cut(s) 255, 297, 489
Sau3AI GATC 2 cut(s) 9, 45
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 65, 180
SduI GDGCHC 1 cut(s) 228
SetI ASST 4 cut(s) 57, 303, 396, 445
SfaNI GCATC 1 cut(s) 418
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 6 cut(s) 243, 273, 279, 355, 462, 501
SsiI CCGC 1 cut(s) 428
StyD4I CCNGG 2 cut(s) 63, 178
TaaI ACNGT 1 cut(s) 22
TasI AATT 6 cut(s) 243, 273, 279, 355, 462, 501
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 3 cut(s) 255, 297, 489
Tru9I TTAA 3 cut(s) 255, 297, 489
TscAI CASTG 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 293, 321
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.