FvH4_7g29810

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012805
Physical Location & Seq
Forward (+)
21846136 .. 21846678
543 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29810.t1

Sequence Viewer

Length: 543 bp
ATGAGTTTGATCGGCGAGACCATGAACTCCTTCAAATCCCTGCAGTTCCGGCAGGTCCTCACTCAGGCCGTCAAGCTCTGTATGATTGTTACATCTTTACTTATATTTTGGAAGGCAGTGATGTTCTTTACTGGCACTGAATCACCTGTTACTGCTGTTCTCTCTGGAAGTATGGAACCTGCTTTGAGAAGAGGGGACCTGGTGTTCTTGCACATGAGTAAAGAACCCATTCGTGAAGGAGAAATTGTCGTTTTTAAAGTTGATGGCCGTGAGATTCCAATTGTCCATCGTGTCATTGAGGTTCATGAAAGAGAAGGTACCGGAGAAGTAGATATCCTCACAAAAGGAGATAACAATCCCGGGAATGATAGACTTCTCTATGCTCCGGGTCAGCTGTGGCTTCAGCAGCAGCATATCATAGGCAGAGCTGTAGGGTTCTTACCTTATGTTGGCTGGGGCAAAATTATCCTGACTGAGAATCCAATTGTTAAGTACATTCTCTATGGCGCATTGGGGTTGCTTGCTATAACTTCAAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

181

Amino Acids

20.09

Weight (kDa)

6.91

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 29 - 99 9.5e-06 Signal peptidase, peptidase S26
Peptidase_S24 PF00717 39 - 102 1.1e-07 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52600
fragaria_vesca FvH4_6g30010 FvH4_7g29810
malus_domestica MD00G1130100.v1.1 MD17G1208500.v1.1
prunus_persica Prupe.3G083100_v2.0.a1 Prupe.3G083100_v2.0.a1
pyrus_communis pycom09g13940 pycom17g21120
rosa_chinensis RchiOBHm_Chr2g0136041
rosa_laevigata RLG00000019498
rosa_multiflora Rmu_sc0011078.1_g000006
rosa_roxburghii Rroxscaffold_2G00108630
rosa_rugosa Rorug02G0327800
rosa_samantha Rh2AG379500 Rh2BG386000 Rh2CG365400
rosa_wichuraiana Rw2G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 43, 187
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 317
AcoI YGGCCR 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 2 cut(s) 319, 494
AfiI CCNNNNNNNGG 2 cut(s) 64, 449
AgsI TTSAA 2 cut(s) 34, 534
AjnI CCWGG 1 cut(s) 198
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 3 cut(s) 76, 394, 428
AluI AGCT 3 cut(s) 76, 394, 428
Alw26I GTCTC 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 2 cut(s) 66, 265
ApeKI GCWGC 2 cut(s) 406, 409
Asp700I GAANNNNTTC 2 cut(s) 29, 228
Asp718I GGTACC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 55, 196
AsuC2I CCSGG 3 cut(s) 360, 361, 387
AsuHPI GGTGA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 55, 196
BanI GGYRCC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 418, 421
BccI CCATC 2 cut(s) 257, 294
BceAI ACGGC 2 cut(s) 53, 252
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 3 cut(s) 360, 361, 387
BcoDI GTCTC 1 cut(s) 11
BfmI CTRYAG 2 cut(s) 41, 429
BfuAI ACCTGC 2 cut(s) 43, 187
BisI GCNGC 2 cut(s) 407, 410
BlsI GCNGC 2 cut(s) 408, 411
Bme1390I CCNGG 4 cut(s) 200, 360, 361, 387
Bme18I GGWCC 2 cut(s) 55, 196
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 55, 196
BmiI GGNNCC 3 cut(s) 177, 197, 319
BmrFI CCNGG 4 cut(s) 200, 360, 361, 387
BpuMI CCSGG 3 cut(s) 360, 361, 387
BsaBI GATNNNNATC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 359
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 449
Bse1I ACTGG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 359
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 2 cut(s) 64, 449
BseMII CTCAG 2 cut(s) 77, 465
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 418, 421
BseYI CCCAGC 1 cut(s) 453
BshFI GGCC 2 cut(s) 68, 267
BshNI GGYRCC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 4 cut(s) 49, 321, 360, 386
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 64, 449
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 2 cut(s) 68, 267
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 359
Bsp143I GATC 1 cut(s) 9
BspANI GGCC 2 cut(s) 68, 267
BspCNI CTCAG 2 cut(s) 76, 466
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 3 cut(s) 177, 197, 319
BspMAI CTGCAG 1 cut(s) 45
BspMI ACCTGC 2 cut(s) 43, 187
BspT107I GGYRCC 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 2 cut(s) 63, 474
BstENI CCTNNNNNAGG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 49, 406
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 4 cut(s) 198, 358, 359, 385
BstSFI CTRYAG 2 cut(s) 41, 429
BstV1I GCAGC 2 cut(s) 418, 421
BsuRI GGCC 2 cut(s) 68, 267
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 135
BveI ACCTGC 2 cut(s) 43, 187
Cac8I GCNNGC 1 cut(s) 522
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 509
Cfr13I GGNCC 2 cut(s) 55, 196
Cfr9I CCCGGG 1 cut(s) 359
CsiI ACCWGGT 1 cut(s) 198
Csp6I GTAC 2 cut(s) 318, 493
CviAII CATG 3 cut(s) 22, 214, 305
CviJI RGCY 7 cut(s) 68, 76, 267, 394, 400, 428, 453
CviKI_1 RGCY 7 cut(s) 68, 76, 267, 394, 400, 428, 453
CviQI GTAC 2 cut(s) 318, 493
DdeI CTNAG 2 cut(s) 63, 474
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
DraI TTTAAA 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 55, 196
Eco57I CTGAAG 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 2 cut(s) 55, 196
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 334
FaeI CATG 3 cut(s) 25, 217, 308
FaqI GGGAC 1 cut(s) 209
FatI CATG 3 cut(s) 21, 213, 304
Fnu4HI GCNGC 2 cut(s) 407, 410
Fsp4HI GCNGC 2 cut(s) 407, 410
GlaI GCGC 1 cut(s) 508
GluI GCNGC 2 cut(s) 407, 410
GsaI CCCAGC 1 cut(s) 457
HaeIII GGCC 2 cut(s) 68, 267
HapII CCGG 4 cut(s) 49, 321, 360, 386
HhaI GCGC 1 cut(s) 509
Hin1II CATG 3 cut(s) 25, 217, 308
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HinfI GANTC 3 cut(s) 140, 274, 478
HpaII CCGG 4 cut(s) 49, 321, 360, 386
HphI GGTGA 1 cut(s) 135
Hpy188III TCNNGA 4 cut(s) 165, 233, 305, 469
HpyAV CCTTC 4 cut(s) 40, 106, 230, 308
HpyCH4V TGCA 2 cut(s) 43, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 406
HpyF3I CTNAG 2 cut(s) 63, 474
Hsp92II CATG 3 cut(s) 25, 217, 308
HspAI GCGC 1 cut(s) 507
KpnI GGTACC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 388
Lsp1109I GCAGC 2 cut(s) 418, 421
MabI ACCWGGT 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 88, 148
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 201
MfeI CAATTG 2 cut(s) 279, 483
MluCI AATT 4 cut(s) 243, 279, 462, 483
MnlI CCTC 4 cut(s) 68, 185, 292, 347
MroXI GAANNNNTTC 2 cut(s) 29, 228
MseI TTAA 2 cut(s) 255, 489
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 4 cut(s) 49, 321, 360, 386
MspR9I CCNGG 4 cut(s) 200, 360, 361, 387
MunI CAATTG 2 cut(s) 279, 483
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 49, 406
NciI CCSGG 3 cut(s) 360, 361, 387
NdeII GATC 1 cut(s) 9
NlaIII CATG 3 cut(s) 25, 217, 308
NlaIV GGNNCC 3 cut(s) 177, 197, 319
PagI TCATGA 1 cut(s) 304
PdmI GAANNNNTTC 2 cut(s) 29, 228
PfeI GAWTC 3 cut(s) 140, 274, 478
PkrI GCNGC 2 cut(s) 408, 411
PpuMI RGGWCCY 2 cut(s) 55, 196
Psp5II RGGWCCY 2 cut(s) 55, 196
Psp6I CCWGG 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 177, 197, 319
PspPI GGNCC 2 cut(s) 55, 196
PspPPI RGGWCCY 2 cut(s) 55, 196
PstI CTGCAG 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 394
RsaI GTAC 2 cut(s) 319, 494
RsaNI GTAC 2 cut(s) 318, 493
SaqAI TTAA 2 cut(s) 255, 489
SatI GCNGC 2 cut(s) 407, 410
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 2 cut(s) 55, 196
ScrFI CCNGG 4 cut(s) 200, 360, 361, 387
SexAI ACCWGGT 1 cut(s) 198
SfcI CTRYAG 2 cut(s) 41, 429
SinI GGWCC 2 cut(s) 55, 196
SmaI CCCGGG 1 cut(s) 361
Sse9I AATT 4 cut(s) 243, 279, 462, 483
StyD4I CCNGG 4 cut(s) 198, 358, 359, 385
TasI AATT 4 cut(s) 243, 279, 462, 483
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 3 cut(s) 140, 274, 478
Tru1I TTAA 2 cut(s) 255, 489
Tru9I TTAA 2 cut(s) 255, 489
TscAI CASTG 2 cut(s) 123, 142
TseI GCWGC 2 cut(s) 406, 409
TspDTI ATGAA 3 cut(s) 38, 293, 321
TspMI CCCGGG 1 cut(s) 359
TspRI CASTG 2 cut(s) 123, 142
VpaK11BI GGWCC 2 cut(s) 55, 196
XagI CCTNNNNNAGG 1 cut(s) 62
XmaI CCCGGG 1 cut(s) 359
XmnI GAANNNNTTC 2 cut(s) 29, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.