FvH4_6g30010

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012805
Physical Location & Seq
Forward (+)
23189183 .. 23193035
3853 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30010.t1

Sequence Viewer

Length: 543 bp
ATGGGTTGGATCGGCGAGACCGTGGACTCCGTCAAATCCCTGCAGTTCCGGCAGGTCCTCACTCAGGCCGTCAGTCTCGGTATGATTGTTACATCTGCACTTATAATATGGAAGGCTTTGATGTGCTTTACCGGCAGTGAATCTCCTGTTGTTGTTGTTTTGTCGGGAAGTATGGAACCGGGCTTCAGGAGGGGGGACATTTTGTTTCTGCACATGAGTAAAGAACCCATTCGTGCAGGAGAAATTGTTGTGTTTAATGTTGATGGCCGTGAGATTCCAATTGTCCATCGTGTCATTAAGGTTCATGAACAAGAAGATACAGGAGAAGTAGATGTCCTCACAAAAGGAGATAACAATTACGGGGATGACAGACTTCTGTATGCCCAGGGTCAGTTGTGGCTTCAACGGCACCATATTATGGGCAGAGCTGTAGGGTTCTTACCTTATGTTGGCTGGGTAACAATTATCATGACTGAAAAGCCAATTATTAAGTATATTCTCATTGGCGCTTTGGGGTTGCTTGTTATAACTTCAAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

181

Amino Acids

20.05

Weight (kDa)

6.2

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S24 PF00717 37 - 114 2.5e-09 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52600
fragaria_vesca FvH4_6g30010 FvH4_7g29810
malus_domestica MD00G1130100.v1.1 MD17G1208500.v1.1
prunus_persica Prupe.3G083100_v2.0.a1 Prupe.3G083100_v2.0.a1
pyrus_communis pycom09g13940 pycom17g21120
rosa_chinensis RchiOBHm_Chr2g0136041
rosa_laevigata RLG00000019498
rosa_multiflora Rmu_sc0011078.1_g000006
rosa_roxburghii Rroxscaffold_2G00108630
rosa_rugosa Rorug02G0327800
rosa_samantha Rh2AG379500 Rh2BG386000 Rh2CG365400
rosa_wichuraiana Rw2G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 104, 527
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 418
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 169
AfiI CCNNNNNNNGG 3 cut(s) 64, 418, 449
AgsI TTSAA 2 cut(s) 404, 534
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 1 cut(s) 428
AluI AGCT 1 cut(s) 428
Alw26I GTCTC 2 cut(s) 11, 80
AlwI GGATC 1 cut(s) 17
AoxI GGCC 2 cut(s) 66, 265
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 180
AvaII GGWCC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 408
BccI CCATC 2 cut(s) 257, 294
BceAI ACGGC 3 cut(s) 53, 252, 422
BciT130I CCWGG 1 cut(s) 386
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 11, 80
BfmI CTRYAG 2 cut(s) 41, 429
BfoI RGCGCY 1 cut(s) 510
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 180, 386
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 177, 410
BmrFI CCNGG 2 cut(s) 180, 386
BpuMI CCSGG 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 21, 384, 385
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 418, 449
Bse118I RCCGGY 1 cut(s) 131
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 3 cut(s) 21, 384, 385
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 3 cut(s) 64, 418, 449
BseMII CTCAG 1 cut(s) 77
BseYI CCCAGC 1 cut(s) 453
BsgI GTGCAG 3 cut(s) 81, 194, 255
BshFI GGCC 2 cut(s) 68, 267
BshNI GGYRCC 1 cut(s) 408
BsiSI CCGG 3 cut(s) 49, 132, 179
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 64, 418, 449
BsmAI GTCTC 2 cut(s) 11, 80
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 2 cut(s) 68, 267
Bso31I GGTCTC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 9
BspANI GGCC 2 cut(s) 68, 267
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 2 cut(s) 304, 468
BspLI GGNNCC 2 cut(s) 177, 410
BspMAI CTGCAG 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 408
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 21, 384, 385
BssMI GATC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 21
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 370
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 2 cut(s) 11, 80
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 49, 132, 406
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 2 cut(s) 178, 384
BstSFI CTRYAG 2 cut(s) 41, 429
BsuRI GGCC 2 cut(s) 68, 267
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 43
CciI TCATGA 2 cut(s) 304, 468
CfoI GCGC 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 3 cut(s) 214, 305, 469
CviJI RGCY 8 cut(s) 68, 116, 183, 267, 400, 428, 453, 481
CviKI_1 RGCY 8 cut(s) 68, 116, 183, 267, 400, 428, 453, 481
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 384
FaeI CATG 3 cut(s) 217, 308, 472
FaqI GGGAC 1 cut(s) 209
FatI CATG 3 cut(s) 213, 304, 468
FokI GGATG 1 cut(s) 377
GlaI GCGC 1 cut(s) 508
GsaI CCCAGC 1 cut(s) 457
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 2 cut(s) 68, 267
HapII CCGG 3 cut(s) 49, 132, 179
HhaI GCGC 1 cut(s) 509
Hin1II CATG 3 cut(s) 217, 308, 472
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HinfI GANTC 3 cut(s) 26, 140, 274
HpaII CCGG 3 cut(s) 49, 132, 179
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 4 cut(s) 165, 187, 305, 469
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 4 cut(s) 43, 98, 211, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 132, 406
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 3 cut(s) 217, 308, 472
HspAI GCGC 1 cut(s) 507
Kzo9I GATC 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 88, 457
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 326
MfeI CAATTG 1 cut(s) 279
MluCI AATT 5 cut(s) 243, 279, 355, 462, 483
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 3 cut(s) 68, 183, 347
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 4 cut(s) 255, 297, 489, 541
MspI CCGG 3 cut(s) 49, 132, 179
MspR9I CCNGG 2 cut(s) 180, 386
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 3 cut(s) 49, 132, 406
NciI CCSGG 1 cut(s) 180
NdeII GATC 1 cut(s) 9
NlaIII CATG 3 cut(s) 217, 308, 472
NlaIV GGNNCC 2 cut(s) 177, 410
PagI TCATGA 2 cut(s) 304, 468
PasI CCCWGGG 1 cut(s) 385
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 140, 274
PflFI GACNNNGTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 418
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 55
PsiI TTATAA 2 cut(s) 104, 527
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 384
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 177, 410
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 29
SaqAI TTAA 4 cut(s) 255, 297, 489, 541
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 180, 386
SetI ASST 4 cut(s) 57, 303, 430, 445
SfcI CTRYAG 2 cut(s) 41, 429
SinI GGWCC 1 cut(s) 55
Sse9I AATT 5 cut(s) 243, 279, 355, 462, 483
StyD4I CCNGG 2 cut(s) 178, 384
TaaI ACNGT 1 cut(s) 22
TasI AATT 5 cut(s) 243, 279, 355, 462, 483
TfiI GAWTC 2 cut(s) 140, 274
Tru1I TTAA 4 cut(s) 255, 297, 489, 541
Tru9I TTAA 4 cut(s) 255, 297, 489, 541
TscAI CASTG 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 293, 321
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 1 cut(s) 142
Tth111I GACNNNGTC 1 cut(s) 29
Van91I CCANNNNNTGG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.