pycom09g13940

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012805
Physical Location & Seq
Reverse (-)
13114545 .. 13118286
3742 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g13940.5

Sequence Viewer

Length: 543 bp
ATGGGTTGGATCGGTGAGAGCGTGGACTCCATCAAATCCCTTCAGATCCGGCAGGTCCTCACCCAGGCCATCAGTCTCGGTATGATTGTTACATCTGCGCTTATAATATGGAAGGCTTTAATGTGTGTCACCGGCAGTGAGTCTCCTGTAGTTGTTGTTTTGTCTGGAAGTATGGAACCTGGTTTCAAGAGGGGGGACATTTTATTCTTGCACATGAGTAAAGAACCCATTCGTGCAGGAGAAATTGTTGTTTTTAATATTGATGGCCGTGAAATTCCAATTGTCCATCGCGTCATTAAGGTTCATGAACGAAAAGATACAGGAGAAGTTGATGTCCTAACAAAAGGAGATAACAATTATGGGGATGACAGGCTTCTGTATGCTCAGGGTCAGCTGTGGCTACAACGGCATCATATCATGGGCAGAGCTGTAGGGTTTTTACCTTATGTTGGCTGGGTGACAATTATCATGACTGAAAAACCTATTATTAAGTATATTCTAATTGGCGCGTTGGGGTTGCTTGTTATAACATCAAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

181

Amino Acids

19.99

Weight (kDa)

7.89

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52600
fragaria_vesca FvH4_6g30010 FvH4_7g29810
malus_domestica MD00G1130100.v1.1 MD17G1208500.v1.1
prunus_persica Prupe.3G083100_v2.0.a1 Prupe.3G083100_v2.0.a1
pyrus_communis pycom09g13940 pycom17g21120
rosa_chinensis RchiOBHm_Chr2g0136041
rosa_laevigata RLG00000019498
rosa_multiflora Rmu_sc0011078.1_g000006
rosa_roxburghii Rroxscaffold_2G00108630
rosa_rugosa Rorug02G0327800
rosa_samantha Rh2AG379500 Rh2BG386000 Rh2CG365400
rosa_wichuraiana Rw2G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 104, 527
Acc36I ACCTGC 1 cut(s) 43
AccII CGCG 2 cut(s) 291, 509
AclWI GGATC 2 cut(s) 17, 40
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 64, 449
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 2 cut(s) 63, 178
AluBI AGCT 2 cut(s) 394, 428
AluI AGCT 2 cut(s) 394, 428
Alw26I GTCTC 2 cut(s) 80, 147
AlwI GGATC 2 cut(s) 17, 40
AoxI GGCC 2 cut(s) 66, 265
ApoI RAATTY 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 2 cut(s) 100, 509
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 4 cut(s) 26, 52, 121, 469
AvaII GGWCC 1 cut(s) 55
BccI CCATC 4 cut(s) 38, 77, 257, 294
BceAI ACGGC 2 cut(s) 252, 422
BciT130I CCWGG 2 cut(s) 65, 180
BcoDI GTCTC 2 cut(s) 80, 147
BfmI CTRYAG 2 cut(s) 147, 429
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 65, 180
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 2 cut(s) 65, 180
BmsI GCATC 1 cut(s) 418
Bpu10I CCTNAGC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 449
Bse118I RCCGGY 1 cut(s) 131
BseBI CCWGG 2 cut(s) 65, 180
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 64, 449
BseMII CTCAG 1 cut(s) 398
BseYI CCCAGC 1 cut(s) 453
BsgI GTGCAG 1 cut(s) 255
Bsh1236I CGCG 2 cut(s) 291, 509
BshFI GGCC 2 cut(s) 68, 267
BsiSI CCGG 2 cut(s) 49, 132
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 64, 449
BsmAI GTCTC 2 cut(s) 80, 147
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 2 cut(s) 68, 267
Bsp143I GATC 2 cut(s) 9, 45
BspANI GGCC 2 cut(s) 68, 267
BspCNI CTCAG 1 cut(s) 397
BspFNI CGCG 2 cut(s) 291, 509
BspHI TCATGA 2 cut(s) 304, 468
BspLI GGNNCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 17, 40
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 9, 45
Bst2UI CCWGG 2 cut(s) 65, 180
BstDEI CTNAG 1 cut(s) 384
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 2 cut(s) 291, 509
BstHHI GCGC 2 cut(s) 100, 509
BstKTI GATC 2 cut(s) 12, 48
BstMAI GTCTC 2 cut(s) 80, 147
BstMBI GATC 2 cut(s) 9, 45
BstMWI GCNNNNNNNGC 1 cut(s) 406
BstNI CCWGG 2 cut(s) 65, 180
BstSCI CCNGG 2 cut(s) 63, 178
BstSFI CTRYAG 2 cut(s) 147, 429
BstUI CGCG 2 cut(s) 291, 509
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 2 cut(s) 68, 267
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 43
CciI TCATGA 2 cut(s) 304, 468
CfoI GCGC 2 cut(s) 100, 509
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 280
CsiI ACCWGGT 1 cut(s) 178
CviAII CATG 4 cut(s) 214, 305, 418, 469
CviJI RGCY 8 cut(s) 68, 116, 267, 373, 394, 400, 428, 453
CviKI_1 RGCY 8 cut(s) 68, 116, 267, 373, 394, 400, 428, 453
DdeI CTNAG 1 cut(s) 384
DpnI GATC 2 cut(s) 11, 47
DpnII GATC 2 cut(s) 9, 45
EaeI YGGCCR 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 26
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 63, 178
FaeI CATG 4 cut(s) 217, 308, 421, 472
FaqI GGGAC 1 cut(s) 209
FatI CATG 4 cut(s) 213, 304, 417, 468
FokI GGATG 1 cut(s) 377
GlaI GCGC 2 cut(s) 99, 508
GsaI CCCAGC 1 cut(s) 457
HaeIII GGCC 2 cut(s) 68, 267
HapII CCGG 2 cut(s) 49, 132
HgaI GACGC 1 cut(s) 280
HhaI GCGC 2 cut(s) 100, 509
Hin1II CATG 4 cut(s) 217, 308, 421, 472
Hin6I GCGC 2 cut(s) 98, 507
HinP1I GCGC 2 cut(s) 98, 507
HinfI GANTC 2 cut(s) 26, 140
HpaII CCGG 2 cut(s) 49, 132
HphI GGTGA 4 cut(s) 26, 52, 121, 469
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 4 cut(s) 165, 187, 305, 469
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 50, 106
HpyCH4V TGCA 2 cut(s) 211, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 406
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 4 cut(s) 217, 308, 421, 472
HspAI GCGC 2 cut(s) 98, 507
Kzo9I GATC 2 cut(s) 9, 45
LweI GCATC 1 cut(s) 418
MabI ACCWGGT 1 cut(s) 178
MaeIII GTNAC 3 cut(s) 88, 127, 457
MalI GATC 2 cut(s) 11, 47
MboI GATC 2 cut(s) 9, 45
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 1 cut(s) 45
MluCI AATT 6 cut(s) 243, 273, 279, 355, 462, 501
MlyI GAGTC 2 cut(s) 20, 149
MnlI CCTC 2 cut(s) 68, 183
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 4 cut(s) 119, 255, 297, 489
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 2 cut(s) 49, 132
MspR9I CCNGG 2 cut(s) 65, 180
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 2 cut(s) 65, 180
MvnI CGCG 2 cut(s) 291, 509
MwoI GCNNNNNNNGC 1 cut(s) 406
NdeII GATC 2 cut(s) 9, 45
NlaIII CATG 4 cut(s) 217, 308, 421, 472
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 127, 457
PagI TCATGA 2 cut(s) 304, 468
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 228
PleI GAGTC 2 cut(s) 20, 148
PpsI GAGTC 2 cut(s) 20, 148
PpuMI RGGWCCY 1 cut(s) 55
PsiI TTATAA 2 cut(s) 104, 527
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 63, 178
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 2 cut(s) 63, 178
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PsuI RGATCY 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 394
SaqAI TTAA 4 cut(s) 119, 255, 297, 489
Sau3AI GATC 2 cut(s) 9, 45
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 2 cut(s) 20, 149
ScrFI CCNGG 2 cut(s) 65, 180
SetI ASST 7 cut(s) 57, 181, 303, 396, 430, 445, 484
SexAI ACCWGGT 1 cut(s) 178
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 2 cut(s) 147, 429
SinI GGWCC 1 cut(s) 55
Sse9I AATT 6 cut(s) 243, 273, 279, 355, 462, 501
SspI AATATT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 63, 178
TasI AATT 6 cut(s) 243, 273, 279, 355, 462, 501
Tru1I TTAA 4 cut(s) 119, 255, 297, 489
Tru9I TTAA 4 cut(s) 119, 255, 297, 489
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 2 cut(s) 127, 457
Tsp45I GTSAC 2 cut(s) 127, 457
TspDTI ATGAA 2 cut(s) 293, 321
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.