RchiOBHm_Chr2g0136041

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012805
Physical Location & Seq
Forward (+)
53284689 .. 53288959
4271 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50687

Sequence Viewer

Length: 543 bp
ATGGGTTGGATCGGCGAGACAGTGGACTCCGTCAAATCCCTGCAGATCCGGCAGGTCCTCACCCAGGCCGTCAGTCTCGGTATGATTGTTACATCTGCACTTATAATATGGAAGGCATTGATGTGCGCTACCGGCAGTGAATCTCCTGTTGTTGTTGTTTTATCTGGAAGTATGGAACCGGGCTTCAGGAGGGGGGACATTTTGTTCTTGCACATGAGTAAAGAACCCATTCGTGCAGGAGAAATTGTTGTCTTTAATGTTGACGGCCGTGAGATTCCAATCGTCCATCGCGTCATTAAGGTTCATGAAAGAGAAGATACTGGAGAAGTAGATGTCCTCACAAAAGGAGATAACAATTATGGGGATGACAGACTTCTGTATGCTCAGGGTCAGTTGTGGCTCCAACGGCACCATATTATGGGTAGAGCTGTGGGGTTCTTACCCTATGTTGGCTGGGTGACAATTATCATGACTGAAAAGCCAATTATTAAGTATATTCTCATTGGCGCATTGGGGTTGCTTGTTATAACTTCAAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

180

Amino Acids

19.96

Weight (kDa)

6.52

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S24 PF00717 35 - 114 1.3e-09 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52600
fragaria_vesca FvH4_6g30010 FvH4_7g29810
malus_domestica MD00G1130100.v1.1 MD17G1208500.v1.1
prunus_persica Prupe.3G083100_v2.0.a1 Prupe.3G083100_v2.0.a1
pyrus_communis pycom09g13940 pycom17g21120
rosa_chinensis RchiOBHm_Chr2g0136041
rosa_laevigata RLG00000019498
rosa_multiflora Rmu_sc0011078.1_g000006
rosa_roxburghii Rroxscaffold_2G00108630
rosa_rugosa Rorug02G0327800
rosa_samantha Rh2AG379500 Rh2BG386000 Rh2CG365400
rosa_wichuraiana Rw2G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 104, 527
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 418
AccII CGCG 1 cut(s) 291
AclWI GGATC 2 cut(s) 17, 40
AcoI YGGCCR 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 169
AfiI CCNNNNNNNGG 3 cut(s) 64, 418, 449
AgsI TTSAA 1 cut(s) 534
AjnI CCWGG 1 cut(s) 63
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 1 cut(s) 428
AluI AGCT 1 cut(s) 428
Alw26I GTCTC 2 cut(s) 11, 80
AlwI GGATC 2 cut(s) 17, 40
AoxI GGCC 2 cut(s) 66, 265
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 2 cut(s) 128, 509
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 52, 469
AvaII GGWCC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 408
BccI CCATC 1 cut(s) 294
BceAI ACGGC 4 cut(s) 53, 252, 280, 422
BciT130I CCWGG 1 cut(s) 65
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 11, 80
BfmI CTRYAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 65, 180
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 3 cut(s) 177, 401, 410
BmrFI CCNGG 2 cut(s) 65, 180
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 418, 449
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 325
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 370
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 3 cut(s) 64, 418, 449
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 325
BseX3I CGGCCG 1 cut(s) 265
BseYI CCCAGC 1 cut(s) 453
BsgI GTGCAG 2 cut(s) 81, 255
Bsh1236I CGCG 1 cut(s) 291
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 68, 267
BshNI GGYRCC 1 cut(s) 408
BsiEI CGRYCG 1 cut(s) 268
BsiSI CCGG 3 cut(s) 49, 132, 179
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 64, 418, 449
BsmAI GTCTC 2 cut(s) 11, 80
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 2 cut(s) 68, 267
Bsp143I GATC 2 cut(s) 9, 45
BspANI GGCC 2 cut(s) 68, 267
BspCNI CTCAG 1 cut(s) 397
BspFNI CGCG 1 cut(s) 291
BspHI TCATGA 2 cut(s) 304, 468
BspLI GGNNCC 3 cut(s) 177, 401, 410
BspMAI CTGCAG 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 17, 40
BspT107I GGYRCC 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 9, 45
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 384
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 291
BstHHI GCGC 2 cut(s) 128, 509
BstKTI GATC 2 cut(s) 12, 48
BstMAI GTCTC 2 cut(s) 11, 80
BstMBI GATC 2 cut(s) 9, 45
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 3 cut(s) 49, 132, 406
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 2 cut(s) 63, 178
BstSFI CTRYAG 1 cut(s) 41
BstUI CGCG 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BstZI CGGCCG 1 cut(s) 265
BsuRI GGCC 2 cut(s) 68, 267
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 27, 142
BveI ACCTGC 1 cut(s) 43
CciI TCATGA 2 cut(s) 304, 468
CfoI GCGC 2 cut(s) 128, 509
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 280
CviAII CATG 3 cut(s) 214, 305, 469
CviJI RGCY 7 cut(s) 68, 183, 267, 400, 428, 453, 481
CviKI_1 RGCY 7 cut(s) 68, 183, 267, 400, 428, 453, 481
DdeI CTNAG 1 cut(s) 384
DpnI GATC 2 cut(s) 11, 47
DpnII GATC 2 cut(s) 9, 45
EaeI YGGCCR 1 cut(s) 265
EagI CGGCCG 1 cut(s) 265
EclXI CGGCCG 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 55
Eco52I CGGCCG 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 63
FaeI CATG 3 cut(s) 217, 308, 472
FaqI GGGAC 1 cut(s) 209
FatI CATG 3 cut(s) 213, 304, 468
FokI GGATG 1 cut(s) 377
GlaI GCGC 2 cut(s) 127, 508
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 68, 267
HapII CCGG 3 cut(s) 49, 132, 179
HgaI GACGC 1 cut(s) 280
HhaI GCGC 2 cut(s) 128, 509
Hin1II CATG 3 cut(s) 217, 308, 472
Hin6I GCGC 2 cut(s) 126, 507
HinP1I GCGC 2 cut(s) 126, 507
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 3 cut(s) 26, 140, 274
HpaII CCGG 3 cut(s) 49, 132, 179
HphI GGTGA 2 cut(s) 52, 469
Hpy166II GTNNAC 2 cut(s) 25, 262
Hpy188III TCNNGA 4 cut(s) 165, 187, 305, 469
Hpy8I GTNNAC 2 cut(s) 25, 262
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 4 cut(s) 43, 98, 211, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 132, 406
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 3 cut(s) 217, 308, 472
HspAI GCGC 2 cut(s) 126, 507
Kzo9I GATC 2 cut(s) 9, 45
LmnI GCTCC 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 88, 457
MalI GATC 2 cut(s) 11, 47
MboI GATC 2 cut(s) 9, 45
MboII GAAGA 1 cut(s) 326
MflI RGATCY 1 cut(s) 45
MluCI AATT 4 cut(s) 243, 355, 462, 483
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 3 cut(s) 68, 183, 347
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 3 cut(s) 255, 297, 489
MslI CAYNNNNRTG 1 cut(s) 121
MspI CCGG 3 cut(s) 49, 132, 179
MspR9I CCNGG 2 cut(s) 65, 180
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 49, 132, 406
NciI CCSGG 1 cut(s) 180
NdeII GATC 2 cut(s) 9, 45
NlaIII CATG 3 cut(s) 217, 308, 472
NlaIV GGNNCC 3 cut(s) 177, 401, 410
NmuCI GTSAC 1 cut(s) 457
PagI TCATGA 2 cut(s) 304, 468
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 140, 274
PflFI GACNNNGTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 418
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 55
PsiI TTATAA 2 cut(s) 104, 527
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 177, 401, 410
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 121
SaqAI TTAA 3 cut(s) 255, 297, 489
Sau3AI GATC 2 cut(s) 9, 45
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 65, 180
SetI ASST 3 cut(s) 57, 303, 430
SfcI CTRYAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 4 cut(s) 243, 355, 462, 483
StyD4I CCNGG 2 cut(s) 63, 178
TaaI ACNGT 1 cut(s) 22
TasI AATT 4 cut(s) 243, 355, 462, 483
TfiI GAWTC 2 cut(s) 140, 274
Tru1I TTAA 3 cut(s) 255, 297, 489
Tru9I TTAA 3 cut(s) 255, 297, 489
TscAI CASTG 2 cut(s) 27, 142
TseFI GTSAC 1 cut(s) 457
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 2 cut(s) 293, 321
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 2 cut(s) 27, 142
Tth111I GACNNNGTC 1 cut(s) 29
Van91I CCANNNNNTGG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.