RLG00000019498

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012805
Physical Location & Seq
Forward (+)
52793061 .. 52796595
3535 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019498

Sequence Viewer

Length: 543 bp
ATGGGTTGGATCGGCGAGACAGTGGACTCCGTCAAATCCCTGCAGATCCGGCAGGTCCTCACTCAGGCCGTCAGTCTCGGTATGATTGTTACATCTGCACTTATAATATGGAAGGCATTGATGTGCGCTACCGGCAGTGAATCTCCAGTTGTTGTTGTTTTGTCCGGAAGTATGGAACCGGGCTTCAGGAGGGGGGACATTTTGTTCTTGCACATGAGTAAAGAACCCATTCGTGCAGGAGAAATTGTTGTCTTTAATGTTGACGGCCGTGAGATTCCAATCGTCCATCGCGTCATTAAGGTTCATGAAAGAGAAGATACTGGAGAAGTAGATGTCCTCACAAAAGGAGATAACAATTATGGGGATGACAGACTTCTGTATGCTCAGGGTCAGTTGTGGCTCCAACGGCACCATATTATGGGTAGAGCTGTGGGGTTCTTACCCTATGTTGGCTGGGTGACAATTATCATGACTGAAAAGCCAATTATTAAGTATATTCTCATTGGCGCGTTGGGGTTGCTTGTTATAACTTCAAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

181

Amino Acids

19.96

Weight (kDa)

6.52

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S24 PF00717 35 - 114 1.3e-09 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52600
fragaria_vesca FvH4_6g30010 FvH4_7g29810
malus_domestica MD00G1130100.v1.1 MD17G1208500.v1.1
prunus_persica Prupe.3G083100_v2.0.a1 Prupe.3G083100_v2.0.a1
pyrus_communis pycom09g13940 pycom17g21120
rosa_chinensis RchiOBHm_Chr2g0136041
rosa_laevigata RLG00000019498
rosa_multiflora Rmu_sc0011078.1_g000006
rosa_roxburghii Rroxscaffold_2G00108630
rosa_rugosa Rorug02G0327800
rosa_samantha Rh2AG379500 Rh2BG386000 Rh2CG365400
rosa_wichuraiana Rw2G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 104, 527
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 418
AccII CGCG 2 cut(s) 291, 509
AccIII TCCGGA 1 cut(s) 164
AclWI GGATC 2 cut(s) 17, 40
AcoI YGGCCR 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 169
AfiI CCNNNNNNNGG 3 cut(s) 64, 418, 449
AgsI TTSAA 1 cut(s) 534
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 1 cut(s) 428
AluI AGCT 1 cut(s) 428
Alw26I GTCTC 2 cut(s) 11, 80
AlwI GGATC 2 cut(s) 17, 40
Aor13HI TCCGGA 1 cut(s) 164
AoxI GGCC 2 cut(s) 66, 265
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 2 cut(s) 128, 509
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 469
AvaII GGWCC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 408
BccI CCATC 1 cut(s) 294
BceAI ACGGC 4 cut(s) 53, 252, 280, 422
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 11, 80
BfmI CTRYAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 3 cut(s) 177, 401, 410
BmrFI CCNGG 1 cut(s) 180
BpmI CTGGAG 2 cut(s) 129, 342
Bpu10I CCTNAGC 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 278
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 418, 449
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 2 cut(s) 146, 325
Bse8I GATNNNNATC 1 cut(s) 278
BseAI TCCGGA 1 cut(s) 164
BseGI GGATG 1 cut(s) 370
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 3 cut(s) 64, 418, 449
BseMII CTCAG 2 cut(s) 77, 398
BseNI ACTGG 2 cut(s) 146, 325
BseX3I CGGCCG 1 cut(s) 265
BseYI CCCAGC 1 cut(s) 453
BsgI GTGCAG 2 cut(s) 81, 255
Bsh1236I CGCG 2 cut(s) 291, 509
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 68, 267
BshNI GGYRCC 1 cut(s) 408
BsiEI CGRYCG 1 cut(s) 268
BsiSI CCGG 4 cut(s) 49, 132, 165, 179
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 64, 418, 449
BsmAI GTCTC 2 cut(s) 11, 80
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 2 cut(s) 68, 267
Bsp13I TCCGGA 1 cut(s) 164
Bsp143I GATC 2 cut(s) 9, 45
BspANI GGCC 2 cut(s) 68, 267
BspCNI CTCAG 2 cut(s) 76, 397
BspEI TCCGGA 1 cut(s) 164
BspFNI CGCG 2 cut(s) 291, 509
BspHI TCATGA 2 cut(s) 304, 468
BspLI GGNNCC 3 cut(s) 177, 401, 410
BspMAI CTGCAG 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 17, 40
BspT107I GGYRCC 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 2 cut(s) 146, 325
BssAI RCCGGY 1 cut(s) 131
BssMI GATC 2 cut(s) 9, 45
Bst4CI ACNGT 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 63, 384
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 2 cut(s) 291, 509
BstHHI GCGC 2 cut(s) 128, 509
BstKTI GATC 2 cut(s) 12, 48
BstMAI GTCTC 2 cut(s) 11, 80
BstMBI GATC 2 cut(s) 9, 45
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 3 cut(s) 49, 132, 406
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 41
BstUI CGCG 2 cut(s) 291, 509
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BstZI CGGCCG 1 cut(s) 265
BsuRI GGCC 2 cut(s) 68, 267
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 27, 142
BveI ACCTGC 1 cut(s) 43
CciI TCATGA 2 cut(s) 304, 468
CfoI GCGC 2 cut(s) 128, 509
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 280
CviAII CATG 3 cut(s) 214, 305, 469
CviJI RGCY 7 cut(s) 68, 183, 267, 400, 428, 453, 481
CviKI_1 RGCY 7 cut(s) 68, 183, 267, 400, 428, 453, 481
DdeI CTNAG 2 cut(s) 63, 384
DpnI GATC 2 cut(s) 11, 47
DpnII GATC 2 cut(s) 9, 45
EaeI YGGCCR 1 cut(s) 265
EagI CGGCCG 1 cut(s) 265
EclXI CGGCCG 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 55
Eco52I CGGCCG 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 55
FaeI CATG 3 cut(s) 217, 308, 472
FaqI GGGAC 1 cut(s) 209
FatI CATG 3 cut(s) 213, 304, 468
FokI GGATG 1 cut(s) 377
GlaI GCGC 2 cut(s) 127, 508
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 2 cut(s) 129, 342
HaeIII GGCC 2 cut(s) 68, 267
HapII CCGG 4 cut(s) 49, 132, 165, 179
HgaI GACGC 1 cut(s) 280
HhaI GCGC 2 cut(s) 128, 509
Hin1II CATG 3 cut(s) 217, 308, 472
Hin6I GCGC 2 cut(s) 126, 507
HinP1I GCGC 2 cut(s) 126, 507
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 3 cut(s) 26, 140, 274
HpaII CCGG 4 cut(s) 49, 132, 165, 179
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 2 cut(s) 25, 262
Hpy188III TCNNGA 4 cut(s) 165, 187, 305, 469
Hpy8I GTNNAC 2 cut(s) 25, 262
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 4 cut(s) 43, 98, 211, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 132, 406
HpyF3I CTNAG 2 cut(s) 63, 384
Hsp92II CATG 3 cut(s) 217, 308, 472
HspAI GCGC 2 cut(s) 126, 507
Kpn2I TCCGGA 1 cut(s) 164
Kzo9I GATC 2 cut(s) 9, 45
LmnI GCTCC 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 88, 457
MalI GATC 2 cut(s) 11, 47
MboI GATC 2 cut(s) 9, 45
MboII GAAGA 1 cut(s) 326
MflI RGATCY 1 cut(s) 45
MluCI AATT 4 cut(s) 243, 355, 462, 483
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 3 cut(s) 68, 183, 347
MroI TCCGGA 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 3 cut(s) 255, 297, 489
MslI CAYNNNNRTG 1 cut(s) 121
MspI CCGG 4 cut(s) 49, 132, 165, 179
MspR9I CCNGG 1 cut(s) 180
MvnI CGCG 2 cut(s) 291, 509
MwoI GCNNNNNNNGC 3 cut(s) 49, 132, 406
NciI CCSGG 1 cut(s) 180
NdeII GATC 2 cut(s) 9, 45
NlaIII CATG 3 cut(s) 217, 308, 472
NlaIV GGNNCC 3 cut(s) 177, 401, 410
NmuCI GTSAC 1 cut(s) 457
PagI TCATGA 2 cut(s) 304, 468
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 140, 274
PflFI GACNNNGTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 418
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 55
PsiI TTATAA 2 cut(s) 104, 527
Psp5II RGGWCCY 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 177, 401, 410
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 121
SaqAI TTAA 3 cut(s) 255, 297, 489
Sau3AI GATC 2 cut(s) 9, 45
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 180
SetI ASST 3 cut(s) 57, 303, 430
SfcI CTRYAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 4 cut(s) 243, 355, 462, 483
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 22
TasI AATT 4 cut(s) 243, 355, 462, 483
TfiI GAWTC 2 cut(s) 140, 274
Tru1I TTAA 3 cut(s) 255, 297, 489
Tru9I TTAA 3 cut(s) 255, 297, 489
TscAI CASTG 2 cut(s) 27, 142
TseFI GTSAC 1 cut(s) 457
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 2 cut(s) 293, 321
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 2 cut(s) 27, 142
Tth111I GACNNNGTC 1 cut(s) 29
Van91I CCANNNNNTGG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.