Rmu_sc0011078.1_g000006

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011078.1
OG0012805
Physical Location & Seq
Forward (+)
16066 .. 17631
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011078.1_g000006.1.cds

Sequence Viewer

Length: 321 bp
atgggttggatcggcgagacagtggactccgtcaaatccctgcagatccggcaggtcctcacccaggccgtcagtctcggtatgattgttacatctgcacttataatatggaaggcattgatgtgcgctaccggcagtgaatctcctgttgttgttgttttatctggaagtatggaaccgggcttcaggaggggggacattttgttcttgcacatgagtaaagaacccattcgtgcaggagaaattgttgtctttaatgttgacgtaaggattttttttcctacacactacttttctttgttcagttctattgtagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

106

Amino Acids

11.66

Weight (kDa)

6.71

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52600
fragaria_vesca FvH4_6g30010 FvH4_7g29810
malus_domestica MD00G1130100.v1.1 MD17G1208500.v1.1
prunus_persica Prupe.3G083100_v2.0.a1 Prupe.3G083100_v2.0.a1
pyrus_communis pycom09g13940 pycom17g21120
rosa_chinensis RchiOBHm_Chr2g0136041
rosa_laevigata RLG00000019498
rosa_multiflora Rmu_sc0011078.1_g000006
rosa_roxburghii Rroxscaffold_2G00108630
rosa_rugosa Rorug02G0327800
rosa_samantha Rh2AG379500 Rh2BG386000 Rh2CG365400
rosa_wichuraiana Rw2G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 43
AclWI GGATC 2 cut(s) 17, 40
AcuI CTGAAG 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 64
AjnI CCWGG 1 cut(s) 63
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
Alw26I GTCTC 2 cut(s) 11, 80
AlwI GGATC 2 cut(s) 17, 40
AoxI GGCC 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 65
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 11, 80
BfmI CTRYAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 65, 180
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 2 cut(s) 65, 180
BpuMI CCSGG 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 131
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 64
BsgI GTGCAG 2 cut(s) 81, 255
BshFI GGCC 1 cut(s) 68
BsiSI CCGG 3 cut(s) 49, 132, 179
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 11, 80
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 9, 45
BspANI GGCC 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 17, 40
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 9, 45
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 22
BstENI CCTNNNNNAGG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 12, 48
BstMAI GTCTC 2 cut(s) 11, 80
BstMBI GATC 2 cut(s) 9, 45
BstMWI GCNNNNNNNGC 2 cut(s) 49, 132
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 2 cut(s) 63, 178
BstSFI CTRYAG 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 1 cut(s) 68
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 27, 142
BveI ACCTGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 1 cut(s) 214
CviJI RGCY 2 cut(s) 68, 183
CviKI_1 RGCY 2 cut(s) 68, 183
DpnI GATC 2 cut(s) 11, 47
DpnII GATC 2 cut(s) 9, 45
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 63
FaeI CATG 1 cut(s) 217
FaiI YATR 5 cut(s) 83, 104, 109, 173, 215
FaqI GGGAC 1 cut(s) 209
FatI CATG 1 cut(s) 213
GlaI GCGC 1 cut(s) 127
HaeIII GGCC 1 cut(s) 68
HapII CCGG 3 cut(s) 49, 132, 179
HhaI GCGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 26, 140
HpaII CCGG 3 cut(s) 49, 132, 179
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 25, 262
Hpy188III TCNNGA 2 cut(s) 165, 187
Hpy8I GTNNAC 2 cut(s) 25, 262
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 4 cut(s) 43, 98, 211, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 132
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 2 cut(s) 9, 45
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 88
MalI GATC 2 cut(s) 11, 47
MboI GATC 2 cut(s) 9, 45
MflI RGATCY 1 cut(s) 45
MluCI AATT 1 cut(s) 243
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 2 cut(s) 68, 183
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 121
MspI CCGG 3 cut(s) 49, 132, 179
MspR9I CCNGG 2 cut(s) 65, 180
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 49, 132
NciI CCSGG 1 cut(s) 180
NdeII GATC 2 cut(s) 9, 45
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 140
PflFI GACNNNGTC 1 cut(s) 29
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 55
PsiI TTATAA 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 121
SaqAI TTAA 1 cut(s) 255
Sau3AI GATC 2 cut(s) 9, 45
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 65, 180
SetI ASST 2 cut(s) 57, 267
SfcI CTRYAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 63, 178
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 267
TasI AATT 1 cut(s) 243
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 2 cut(s) 27, 142
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 2 cut(s) 27, 142
Tth111I GACNNNGTC 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.