AT1G53290

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009248
Physical Location & Seq
Forward (+)
19871116 .. 19873727
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53290.1

Sequence Viewer

Length: 1038 bp
ATGCATTCTCCTCGTAAGCTATTTCACGCGCGGTCATCACTCGCCACGCGCCGATCAACGGCTCTTGTCGTATTAACTTCCCTAGCTATTGGAATCGCCGGTTTCACATTTGGACTCGCCGTAATTCTTATACCGGGTCTCCGATTAACCGGTCGTAATTGCTTGACGAACACTCCTCCGAAGACGGTGCGAGTCGTTTGGGACGTCGCCGGAAATAGTAATGGCGTTGTTAGTGGCGAAAAGAAGAGGCATAAGGTTATGGGATTCGTTGGTATTCAAACCGGATTTGGATCTGCTGGCCGGAGACGATCACTTAGAAAGACATGGATGCCGTCAGATCCAGAAGGTCTTCGACGTTTGGAAGAATCTACGGGGTTAGCCATCAGGTTTATGATAGGAAAAACGAAAAGTGAGGAGAAAATGGCTCAGCTCAGAAGAGAAATCGCAGAGTATGATGACTTCGTACTGCTAGATATCGAAGAGGAGTACAGTAAGCTTCCTTACAAAACTTTGGCTTTCTTCAAAGCTGCGTACGCGCTTTATGATTCTGAGTTCTATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGACTCTCTCTGCTATTGGCGAAAGAGCGGAGTCACTCTCAGACGTACCTAGGATGCTTGAAAAAGGGTCCGGTTTTCACAGATCCTAAGCTCAAATGGTATGAACCATTGTCTCATCTGCTGGGAAAAGAGTACTTTCTTCATGCTTATGGCCCGATTTATGCTCTCTCTGCTGATGTGGTAGCCAGTTTGGTTGCCCTCAAGAATAACAGTTTCAGGATGTTTAACAACGAGGACGTAACAATAGGTGCGTGGATGCTGGCAATGAATGTCAACCACGAGAACCATCACATCCTTTGCGAACCAGAATGCTCACCTTCTTCTGTTGCTGTTTGGGACATCCCTAAATGCTCAGGTCTTTGTAACCCAGAGAAAAGGATGTTGGAACTTCACAAGCAAGAAAGCTGCTCGAAAAGCCCAACTTTGCCATCAGATGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

345

Amino Acids

38.78

Weight (kDa)

8.93

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 101 - 294 1.6e-49 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 207
AccBSI CCGCTC 1 cut(s) 622
AccII CGCG 4 cut(s) 29, 31, 49, 536
AciI CCGC 2 cut(s) 31, 622
AclWI GGATC 3 cut(s) 298, 332, 671
AcoI YGGCCR 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 5 cut(s) 465, 488, 533, 641, 728
AfiI CCNNNNNNNGG 1 cut(s) 58
AgeI ACCGGT 1 cut(s) 149
AgsI TTSAA 3 cut(s) 278, 523, 655
AjuI GAANNNNNNNTTGG 2 cut(s) 959, 991
AluBI AGCT 8 cut(s) 19, 86, 430, 496, 527, 566, 685, 999
AluI AGCT 8 cut(s) 19, 86, 430, 496, 527, 566, 685, 999
Alw26I GTCTC 3 cut(s) 143, 298, 711
AlwI GGATC 3 cut(s) 298, 332, 671
AoxI GGCC 3 cut(s) 298, 587, 745
ApeKI GCWGC 2 cut(s) 527, 999
AsiGI ACCGGT 1 cut(s) 149
Asp700I GAANNNNTTC 1 cut(s) 348
AspA2I CCTAGG 1 cut(s) 643
AspLEI GCGC 3 cut(s) 31, 51, 538
AspS9I GGNCC 2 cut(s) 662, 746
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 900
AvaII GGWCC 1 cut(s) 662
AvrII CCTAGG 1 cut(s) 643
BarI GAAGNNNNNNTAC 2 cut(s) 443, 475
BauI CACGAG 1 cut(s) 872
BbsI GAAGAC 2 cut(s) 188, 341
BbvI GCAGC 2 cut(s) 514, 986
BccI CCATC 3 cut(s) 389, 888, 1030
BceAI ACGGC 3 cut(s) 75, 104, 316
BcgI CGANNNNNNTGC 3 cut(s) 27, 169, 203
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 3 cut(s) 143, 298, 711
BfaI CTAG 3 cut(s) 83, 470, 644
BisI GCNGC 2 cut(s) 528, 1000
BlnI CCTAGG 1 cut(s) 643
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 2 cut(s) 529, 1001
BmcAI AGTACT 1 cut(s) 728
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 662
BmgT120I GGNCC 2 cut(s) 662, 746
BmiI GGNNCC 1 cut(s) 663
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 3 cut(s) 318, 638, 840
BpiI GAAGAC 2 cut(s) 188, 341
BplI GAGNNNNNCTC 2 cut(s) 616, 648
Bpu10I CCTNAGC 2 cut(s) 681, 946
Bpu1102I GCTNAGC 1 cut(s) 426
BpuEI CTTGAG 2 cut(s) 604, 779
BpuMI CCSGG 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 289
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 643
BsaWI WCCGGW 3 cut(s) 149, 281, 664
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 157, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse118I RCCGGY 2 cut(s) 98, 149
Bse1I ACTGG 1 cut(s) 780
Bse3DI GCAATG 1 cut(s) 864
Bse8I GATNNNNATC 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 643
BseGI GGATG 7 cut(s) 333, 653, 819, 855, 885, 933, 978
BseJI GATNNNNATC 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 5 cut(s) 440, 445, 540, 647, 960
BseNI ACTGG 1 cut(s) 780
BseRI GAGGAG 3 cut(s) 165, 428, 497
BseXI GCAGC 2 cut(s) 514, 986
BseYI CCCAGC 1 cut(s) 715
Bsh1236I CGCG 4 cut(s) 29, 31, 49, 536
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 3 cut(s) 300, 589, 747
BshTI ACCGGT 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 7 cut(s) 99, 134, 150, 210, 282, 301, 665
BsiWI CGTACG 1 cut(s) 531
BslFI GGGAC 2 cut(s) 215, 944
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 3 cut(s) 143, 298, 711
BsmBI CGTCTC 1 cut(s) 298
BsmFI GGGAC 2 cut(s) 215, 944
BsmI GAATGC 2 cut(s) 4, 908
BsnI GGCC 3 cut(s) 300, 589, 747
Bso31I GGTCTC 1 cut(s) 143
Bsp143I GATC 6 cut(s) 53, 290, 308, 337, 592, 676
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 2 cut(s) 31, 622
BspANI GGCC 3 cut(s) 300, 589, 747
BspCNI CTCAG 5 cut(s) 439, 444, 541, 646, 959
BspFNI CGCG 4 cut(s) 29, 31, 49, 536
BspLI GGNNCC 1 cut(s) 663
BspPI GGATC 3 cut(s) 298, 332, 671
BspTNI GGTCTC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 864
BsrFI RCCGGY 2 cut(s) 98, 149
BsrI ACTGG 1 cut(s) 780
BssAI RCCGGY 2 cut(s) 98, 149
BssECI CCNNGG 1 cut(s) 643
BssMI GATC 6 cut(s) 53, 290, 308, 337, 592, 676
BssNI GRCGYC 1 cut(s) 204
BssSI CACGAG 1 cut(s) 872
BssT1I CCWWGG 1 cut(s) 643
Bst2BI CACGAG 1 cut(s) 872
Bst4CI ACNGT 3 cut(s) 187, 491, 806
Bst6I CTCTTC 3 cut(s) 239, 430, 474
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 298, 855
BstDEI CTNAG 7 cut(s) 314, 426, 431, 549, 633, 681, 946
BstF5I GGATG 7 cut(s) 333, 653, 819, 855, 885, 933, 978
BstFNI CGCG 4 cut(s) 29, 31, 49, 536
BstHHI GCGC 3 cut(s) 31, 51, 538
BstKTI GATC 6 cut(s) 56, 293, 311, 340, 595, 679
BstMAI GTCTC 3 cut(s) 143, 298, 711
BstMBI GATC 6 cut(s) 53, 290, 308, 337, 592, 676
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 533, 764, 1008
BstSCI CCNGG 1 cut(s) 133
BstUI CGCG 4 cut(s) 29, 31, 49, 536
BstV1I GCAGC 2 cut(s) 514, 986
BstV2I GAAGAC 2 cut(s) 188, 341
BstX2I RGATCY 3 cut(s) 290, 337, 676
BstYI RGATCY 3 cut(s) 290, 337, 676
BsuRI GGCC 3 cut(s) 300, 589, 747
BtsCI GGATG 7 cut(s) 333, 653, 819, 855, 885, 933, 978
Cac8I GCNNGC 2 cut(s) 298, 855
CfoI GCGC 3 cut(s) 31, 51, 538
Cfr10I RCCGGY 2 cut(s) 98, 149
Cfr13I GGNCC 2 cut(s) 662, 746
Csp6I GTAC 5 cut(s) 464, 487, 532, 640, 727
CspAI ACCGGT 1 cut(s) 149
CviAII CATG 2 cut(s) 324, 737
CviQI GTAC 5 cut(s) 464, 487, 532, 640, 727
DdeI CTNAG 7 cut(s) 314, 426, 431, 549, 633, 681, 946
DpnI GATC 6 cut(s) 55, 292, 310, 339, 594, 678
DpnII GATC 6 cut(s) 53, 290, 308, 337, 592, 676
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 3 cut(s) 239, 430, 474
EarI CTCTTC 3 cut(s) 239, 430, 474
Eco130I CCWWGG 1 cut(s) 643
Eco31I GGTCTC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 662
EcoRV GATATC 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 643
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 643
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 2 cut(s) 327, 740
FalI AAGNNNNNCTT 2 cut(s) 1000, 1032
FaqI GGGAC 2 cut(s) 215, 944
FatI CATG 2 cut(s) 323, 736
Fnu4HI GCNGC 2 cut(s) 528, 1000
FokI GGATG 7 cut(s) 340, 660, 826, 862, 872, 920, 985
Fsp4HI GCNGC 2 cut(s) 528, 1000
FspBI CTAG 3 cut(s) 83, 470, 644
GlaI GCGC 3 cut(s) 30, 50, 537
GluI GCNGC 2 cut(s) 528, 1000
GsaI CCCAGC 1 cut(s) 719
HaeIII GGCC 3 cut(s) 300, 589, 747
HapII CCGG 7 cut(s) 99, 134, 150, 210, 282, 301, 665
HhaI GCGC 3 cut(s) 31, 51, 538
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 327, 740
Hin6I GCGC 3 cut(s) 29, 49, 536
HinP1I GCGC 3 cut(s) 29, 49, 536
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 8 cut(s) 93, 114, 192, 264, 365, 545, 597, 625
HpaII CCGG 7 cut(s) 99, 134, 150, 210, 282, 301, 665
HphI GGTGA 1 cut(s) 900
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 7 cut(s) 143, 180, 337, 434, 550, 636, 1027
Hpy188III TCNNGA 3 cut(s) 341, 796, 811
Hpy8I GTNNAC 1 cut(s) 868
Hpy99I CGWCG 2 cut(s) 209, 357
HpyAV CCTTC 2 cut(s) 338, 921
HpyCH4III ACNGT 3 cut(s) 187, 491, 806
HpyCH4IV ACGT 4 cut(s) 204, 355, 638, 831
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 764, 1008
HpyF3I CTNAG 7 cut(s) 314, 426, 431, 549, 633, 681, 946
HpySE526I ACGT 4 cut(s) 204, 355, 638, 831
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 327, 740
HspAI GCGC 3 cut(s) 29, 49, 536
Kzo9I GATC 6 cut(s) 53, 290, 308, 337, 592, 676
Lsp1109I GCAGC 2 cut(s) 514, 986
LweI GCATC 3 cut(s) 318, 638, 840
MaeI CTAG 3 cut(s) 83, 470, 644
MaeII ACGT 4 cut(s) 204, 355, 638, 831
MaeIII GTNAC 3 cut(s) 626, 832, 956
MalI GATC 6 cut(s) 55, 292, 310, 339, 594, 678
MbiI CCGCTC 1 cut(s) 622
MboI GATC 6 cut(s) 53, 290, 308, 337, 592, 676
MboII GAAGA 9 cut(s) 193, 256, 341, 374, 447, 491, 511, 725, 906
MflI RGATCY 3 cut(s) 290, 337, 676
MluCI AATT 2 cut(s) 123, 157
MlyI GAGTC 4 cut(s) 108, 201, 591, 634
MmeI TCCRAC 1 cut(s) 957
MnlI CCTC 8 cut(s) 21, 186, 240, 406, 475, 579, 803, 820
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 3 cut(s) 74, 146, 819
MslI CAYNNNNRTG 1 cut(s) 741
MspI CCGG 7 cut(s) 99, 134, 150, 210, 282, 301, 665
MspR9I CCNGG 1 cut(s) 135
Mva1269I GAATGC 2 cut(s) 4, 908
MvnI CGCG 4 cut(s) 29, 31, 49, 536
MwoI GCNNNNNNNGC 3 cut(s) 533, 764, 1008
NciI CCSGG 1 cut(s) 135
NdeII GATC 6 cut(s) 53, 290, 308, 337, 592, 676
NlaIII CATG 2 cut(s) 327, 740
NlaIV GGNNCC 1 cut(s) 663
NmuCI GTSAC 1 cut(s) 626
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 2 cut(s) 4, 908
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 4 cut(s) 93, 264, 365, 545
Pfl23II CGTACG 1 cut(s) 531
PinAI ACCGGT 1 cut(s) 149
PkrI GCNGC 2 cut(s) 529, 1001
PleI GAGTC 4 cut(s) 108, 200, 591, 633
PpsI GAGTC 4 cut(s) 108, 200, 591, 633
PspFI CCCAGC 1 cut(s) 715
PspLI CGTACG 1 cut(s) 531
PspN4I GGNNCC 1 cut(s) 663
PspPI GGNCC 2 cut(s) 662, 746
PsuI RGATCY 3 cut(s) 290, 337, 676
RsaI GTAC 5 cut(s) 465, 488, 533, 641, 728
RsaNI GTAC 5 cut(s) 464, 487, 532, 640, 727
RseI CAYNNNNRTG 1 cut(s) 741
SaqAI TTAA 3 cut(s) 74, 146, 819
SatI GCNGC 2 cut(s) 528, 1000
Sau3AI GATC 6 cut(s) 53, 290, 308, 337, 592, 676
Sau96I GGNCC 2 cut(s) 662, 746
ScaI AGTACT 1 cut(s) 728
SchI GAGTC 4 cut(s) 108, 201, 591, 634
ScrFI CCNGG 1 cut(s) 135
SfaNI GCATC 3 cut(s) 318, 638, 840
SinI GGWCC 1 cut(s) 662
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 2 cut(s) 583, 794
SmoI CTYRAG 2 cut(s) 583, 794
Sse9I AATT 2 cut(s) 123, 157
SsiI CCGC 2 cut(s) 31, 622
SspMI CTAG 3 cut(s) 83, 470, 644
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 3 cut(s) 187, 491, 806
TaiI ACGT 4 cut(s) 207, 358, 641, 834
TaqI TCGA 4 cut(s) 352, 477, 595, 1004
TasI AATT 2 cut(s) 123, 157
TatI WGTACW 2 cut(s) 486, 726
TfiI GAWTC 4 cut(s) 93, 264, 365, 545
Tru1I TTAA 3 cut(s) 74, 146, 819
Tru9I TTAA 3 cut(s) 74, 146, 819
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 2 cut(s) 527, 999
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 3 cut(s) 711, 725, 875
VpaK11BI GGWCC 1 cut(s) 662
XmaJI CCTAGG 1 cut(s) 643
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 3 cut(s) 83, 470, 644
ZraI GACGTC 1 cut(s) 205
ZrmI AGTACT 1 cut(s) 728
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.