RLG00000033299

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009248
Physical Location & Seq
Reverse (-)
25433844 .. 25437113
3270 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033299

Sequence Viewer

Length: 1038 bp
ATGCCTTCGTCCCCCAAGTTCTTCCACGCGCGCCAACCCCCCTCCGGTCGCCGATCGACGGTCCTGATCATCTGCTTCTGCCTCGTCTTCGGCCTCTCCGGCTTCGTCTTCGGCCTCGTCGCGCTCCGCAGCAGCCAGTACAATTGCCTCACCACCCAGTCCAGATCGGTGAGGGTCGTCTGGGAGAGAATCGGCAGAACCAGCCAAAACGGCCTCGTGTTCAGCGACGGAGATGCAAATAGCGGCAGGCATAAAGTCATGGGCTTCGTCGGCATTCAGACCGGCTTCGGATCCGTCGGCCGGAGAGAGTCGCTCCGGAAGACTTGGATGCCGTCCGATGCCCAGGGCCTTCAACGATTGGAAGAAGCCACTGGTTTGGCTTTTAGGTTCATCATTGGTAAAAGCAAGGACAGAGCAAAGATGTTGGACCTGGGAAAGGAAGTGGCGAAATACGACGATTTCTTGCTGTTGGATATTGAAGAGGAGTACAGTAAGCTCCCCTACAAAACATTGGCTTTCTTCAAAGCTGCCTATGCGCTTTTTGATTCCGACTTCTATGTTAAAGCTGACGACGACATTTACTTGAGGCCAGATCGCCTTTCAACGCTCTTGGCAAAAGAGCGCTCTCACTCTCAGACTTACCTTGGATGCATGAAAAAGGGCCCAGTCTTCACCGACCCAAAACTTAAATGGTTTGAGCCACTAGCGTATTTGCTAGGGAGTGAATACTTTCTCCATGCCTATGGTCCAATCTATGCTCTTTCTGCCGATGTTGTTGCAAGTTTGGTTGCTCTTAGGAATAACAGTTTCCGGATGTTTAGCAATGAGGATGTCACAATTGGTGCATGGATGCTTGCAATGAACGTCAACCATGAGAACAATCAAGCACTATGCTCACCAGAATGTACATCATCATCTATTGCTGTGTGGGATATTCCTAAGTGCTCAGGGCTCTGCAATCCAGAAAAGAAACTTTTAGAACTACATCAAAAGGACAGCTGTACAAAAAGTCCAACGATGGAATCTGATGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

346

Amino Acids

38.73

Weight (kDa)

8.28

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 101 - 294 1.7e-48 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 29, 31, 122
AccIII TCCGGA 2 cut(s) 315, 810
AciI CCGC 2 cut(s) 127, 243
AclWI GGATC 2 cut(s) 285, 298
AcoI YGGCCR 1 cut(s) 298
AfaI GTAC 4 cut(s) 140, 488, 907, 1003
AfeI AGCGCT 1 cut(s) 623
AfiI CCNNNNNNNGG 4 cut(s) 44, 58, 300, 436
AgsI TTSAA 4 cut(s) 353, 479, 523, 603
AjnI CCWGG 2 cut(s) 342, 429
AluBI AGCT 4 cut(s) 496, 527, 566, 999
AluI AGCT 4 cut(s) 496, 527, 566, 999
Alw21I GWGCWC 1 cut(s) 947
AlwI GGATC 2 cut(s) 285, 298
Aor13HI TCCGGA 2 cut(s) 315, 810
Aor51HI AGCGCT 1 cut(s) 623
AoxI GGCC 7 cut(s) 91, 112, 211, 298, 346, 587, 661
ApaI GGGCCC 1 cut(s) 665
ApeKI GCWGC 3 cut(s) 129, 132, 527
Asp700I GAANNNNTTC 1 cut(s) 729
AspLEI GCGC 5 cut(s) 31, 33, 124, 538, 624
AspS9I GGNCC 6 cut(s) 61, 346, 427, 661, 662, 746
AsuHPI GGTGA 4 cut(s) 142, 181, 664, 888
AvaII GGWCC 3 cut(s) 61, 427, 746
BaeGI GKGCMC 1 cut(s) 665
BamHI GGATCC 1 cut(s) 290
BanII GRGCYC 2 cut(s) 665, 954
BauI CACGAG 1 cut(s) 215
BbsI GAAGAC 4 cut(s) 79, 100, 326, 661
Bbv12I GWGCWC 1 cut(s) 947
BbvI GCAGC 3 cut(s) 141, 144, 514
BccI CCATC 1 cut(s) 1012
BceAI ACGGC 2 cut(s) 226, 316
BcgI CGANNNNNNTGC 4 cut(s) 215, 249, 758, 792
BciT130I CCWGG 2 cut(s) 344, 431
BclI TGATCA 1 cut(s) 66
BfaI CTAG 2 cut(s) 704, 716
BfoI RGCGCY 1 cut(s) 625
BglI GCCNNNNNGGC 2 cut(s) 99, 210
BisI GCNGC 4 cut(s) 130, 133, 244, 528
BlsI GCNGC 4 cut(s) 131, 134, 245, 529
Bme1390I CCNGG 2 cut(s) 344, 431
Bme18I GGWCC 3 cut(s) 61, 427, 746
BmgT120I GGNCC 6 cut(s) 61, 346, 427, 661, 662, 746
BmiI GGNNCC 2 cut(s) 292, 663
BmrFI CCNGG 2 cut(s) 344, 431
BmrI ACTGGG 2 cut(s) 151, 659
BmsI GCATC 5 cut(s) 223, 318, 328, 638, 840
BmuI ACTGGG 2 cut(s) 151, 659
BpiI GAAGAC 4 cut(s) 79, 100, 326, 661
BplI GAGNNNNNCTC 2 cut(s) 297, 329
Bpu10I CCTNAGC 1 cut(s) 946
BpuEI CTTGAG 1 cut(s) 604
BsaJI CCNNGG 4 cut(s) 342, 343, 430, 643
BsaWI WCCGGW 3 cut(s) 44, 315, 810
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 58, 300, 436
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 4 cut(s) 136, 157, 376, 665
Bse3DI GCAATG 2 cut(s) 829, 864
BseAI TCCGGA 2 cut(s) 315, 810
BseBI CCWGG 2 cut(s) 344, 431
BseDI CCNNGG 4 cut(s) 342, 343, 430, 643
BseGI GGATG 5 cut(s) 333, 653, 819, 835, 855
BseLI CCNNNNNNNGG 4 cut(s) 44, 58, 300, 436
BseMI GCAATG 2 cut(s) 829, 864
BseMII CTCAG 2 cut(s) 647, 960
BseNI ACTGG 4 cut(s) 136, 157, 376, 665
BsePI GCGCGC 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 497
BseSI GKGCMC 1 cut(s) 665
BseX3I CGGCCG 1 cut(s) 298
BseXI GCAGC 3 cut(s) 141, 144, 514
Bsh1236I CGCG 3 cut(s) 29, 31, 122
Bsh1285I CGRYCG 3 cut(s) 49, 56, 301
BshFI GGCC 7 cut(s) 93, 114, 213, 300, 348, 589, 663
BsiEI CGRYCG 3 cut(s) 49, 56, 301
BsiHKAI GWGCWC 1 cut(s) 947
BsiSI CCGG 6 cut(s) 45, 99, 282, 301, 316, 811
BslI CCNNNNNNNGG 4 cut(s) 44, 58, 300, 436
BsmI GAATGC 1 cut(s) 273
BsnI GGCC 7 cut(s) 93, 114, 213, 300, 348, 589, 663
Bsp120I GGGCCC 1 cut(s) 661
Bsp1286I GDGCHC 3 cut(s) 665, 947, 954
Bsp13I TCCGGA 2 cut(s) 315, 810
Bsp1407I TGTACA 2 cut(s) 905, 1001
Bsp143I GATC 5 cut(s) 53, 66, 164, 290, 592
BspACI CCGC 2 cut(s) 127, 243
BspANI GGCC 7 cut(s) 93, 114, 213, 300, 348, 589, 663
BspCNI CTCAG 2 cut(s) 646, 959
BspEI TCCGGA 2 cut(s) 315, 810
BspFNI CGCG 3 cut(s) 29, 31, 122
BspLI GGNNCC 2 cut(s) 292, 663
BspPI GGATC 2 cut(s) 285, 298
BsrDI GCAATG 2 cut(s) 829, 864
BsrFI RCCGGY 1 cut(s) 281
BsrGI TGTACA 2 cut(s) 905, 1001
BsrI ACTGG 4 cut(s) 136, 157, 376, 665
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 4 cut(s) 342, 343, 430, 643
BssHII GCGCGC 1 cut(s) 29
BssMI GATC 5 cut(s) 53, 66, 164, 290, 592
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 643
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 344, 431
Bst4CI ACNGT 3 cut(s) 61, 491, 806
Bst6I CTCTTC 1 cut(s) 474
BstAUI TGTACA 2 cut(s) 905, 1001
BstC8I GCNNGC 3 cut(s) 31, 248, 855
BstDEI CTNAG 4 cut(s) 633, 794, 939, 946
BstENI CCTNNNNNAGG 1 cut(s) 434
BstF5I GGATG 5 cut(s) 333, 653, 819, 835, 855
BstFNI CGCG 3 cut(s) 29, 31, 122
BstH2I RGCGCY 1 cut(s) 625
BstHHI GCGC 5 cut(s) 31, 33, 124, 538, 624
BstKTI GATC 5 cut(s) 56, 69, 167, 293, 595
BstMBI GATC 5 cut(s) 53, 66, 164, 290, 592
BstMCI CGRYCG 3 cut(s) 49, 56, 301
BstMWI GCNNNNNNNGC 6 cut(s) 99, 201, 210, 270, 533, 764
BstNI CCWGG 2 cut(s) 344, 431
BstSCI CCNGG 2 cut(s) 342, 429
BstSLI GKGCMC 1 cut(s) 665
BstUI CGCG 3 cut(s) 29, 31, 122
BstV1I GCAGC 3 cut(s) 141, 144, 514
BstV2I GAAGAC 4 cut(s) 79, 100, 326, 661
BstX2I RGATCY 1 cut(s) 290
BstXI CCANNNNNNTGG 2 cut(s) 376, 743
BstYI RGATCY 1 cut(s) 290
BstZI CGGCCG 1 cut(s) 298
BsuRI GGCC 7 cut(s) 93, 114, 213, 300, 348, 589, 663
BtsCI GGATG 5 cut(s) 333, 653, 819, 835, 855
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 3 cut(s) 31, 248, 855
CfoI GCGC 5 cut(s) 31, 33, 124, 538, 624
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 6 cut(s) 61, 346, 427, 661, 662, 746
Csp6I GTAC 4 cut(s) 139, 487, 906, 1002
CviAII CATG 5 cut(s) 259, 652, 737, 846, 872
CviQI GTAC 4 cut(s) 139, 487, 906, 1002
DdeI CTNAG 4 cut(s) 633, 794, 939, 946
DpnI GATC 5 cut(s) 55, 68, 166, 292, 594
DpnII GATC 5 cut(s) 53, 66, 164, 290, 592
EaeI YGGCCR 1 cut(s) 298
EagI CGGCCG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
EclXI CGGCCG 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 643
Eco24I GRGCYC 2 cut(s) 665, 954
Eco47I GGWCC 3 cut(s) 61, 427, 746
Eco47III AGCGCT 1 cut(s) 623
Eco52I CGGCCG 1 cut(s) 298
EcoNI CCTNNNNNAGG 1 cut(s) 434
EcoO109I RGGNCCY 2 cut(s) 346, 661
EcoRII CCWGG 2 cut(s) 342, 429
EcoT14I CCWWGG 1 cut(s) 643
EcoT22I ATGCAT 1 cut(s) 653
EcoT38I GRGCYC 2 cut(s) 665, 954
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 5 cut(s) 262, 655, 740, 849, 875
FatI CATG 5 cut(s) 258, 651, 736, 845, 871
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 4 cut(s) 130, 133, 244, 528
FokI GGATG 5 cut(s) 340, 660, 826, 842, 862
FriOI GRGCYC 2 cut(s) 665, 954
Fsp4HI GCNGC 4 cut(s) 130, 133, 244, 528
FspBI CTAG 2 cut(s) 704, 716
GlaI GCGC 5 cut(s) 30, 32, 123, 537, 623
GluI GCNGC 4 cut(s) 130, 133, 244, 528
HaeII RGCGCY 1 cut(s) 625
HaeIII GGCC 7 cut(s) 93, 114, 213, 300, 348, 589, 663
HapII CCGG 6 cut(s) 45, 99, 282, 301, 316, 811
HhaI GCGC 5 cut(s) 31, 33, 124, 538, 624
Hin1II CATG 5 cut(s) 262, 655, 740, 849, 875
Hin6I GCGC 5 cut(s) 29, 31, 122, 536, 622
HinP1I GCGC 5 cut(s) 29, 31, 122, 536, 622
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HinfI GANTC 4 cut(s) 189, 308, 545, 1022
HpaII CCGG 6 cut(s) 45, 99, 282, 301, 316, 811
HphI GGTGA 4 cut(s) 142, 181, 664, 888
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 6 cut(s) 279, 290, 337, 550, 636, 1027
Hpy188III TCNNGA 5 cut(s) 64, 162, 316, 811, 962
Hpy8I GTNNAC 1 cut(s) 868
Hpy99I CGWCG 7 cut(s) 61, 122, 230, 272, 299, 458, 575
HpyAV CCTTC 2 cut(s) 15, 359
HpyCH4III ACNGT 3 cut(s) 61, 491, 806
HpyCH4IV ACGT 1 cut(s) 864
HpyCH4V TGCA 6 cut(s) 236, 651, 779, 845, 857, 957
HpyF10VI GCNNNNNNNGC 6 cut(s) 99, 201, 210, 270, 533, 764
HpyF3I CTNAG 4 cut(s) 633, 794, 939, 946
HpySE526I ACGT 1 cut(s) 864
Hsp92II CATG 5 cut(s) 262, 655, 740, 849, 875
HspAI GCGC 5 cut(s) 29, 31, 122, 536, 622
Kpn2I TCCGGA 2 cut(s) 315, 810
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 5 cut(s) 53, 66, 164, 290, 592
LmnI GCTCC 3 cut(s) 129, 318, 501
Lsp1109I GCAGC 3 cut(s) 141, 144, 514
LweI GCATC 5 cut(s) 223, 318, 328, 638, 840
MaeI CTAG 2 cut(s) 704, 716
MaeII ACGT 1 cut(s) 864
MaeIII GTNAC 1 cut(s) 832
MalI GATC 5 cut(s) 55, 68, 166, 292, 594
MboI GATC 5 cut(s) 53, 66, 164, 290, 592
MboII GAAGA 8 cut(s) 13, 79, 100, 331, 374, 491, 511, 661
MfeI CAATTG 2 cut(s) 142, 837
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 3 cut(s) 665, 947, 954
MluCI AATT 2 cut(s) 142, 837
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 4 cut(s) 405, 450, 573, 1037
Mph1103I ATGCAT 1 cut(s) 653
MroI TCCGGA 2 cut(s) 315, 810
MroXI GAANNNNTTC 1 cut(s) 729
MseI TTAA 2 cut(s) 561, 687
MslI CAYNNNNRTG 2 cut(s) 741, 901
MspA1I CMGCKG 1 cut(s) 999
MspI CCGG 6 cut(s) 45, 99, 282, 301, 316, 811
MspR9I CCNGG 2 cut(s) 344, 431
MunI CAATTG 2 cut(s) 142, 837
Mva1269I GAATGC 1 cut(s) 273
MvaI CCWGG 2 cut(s) 344, 431
MvnI CGCG 3 cut(s) 29, 31, 122
MwoI GCNNNNNNNGC 6 cut(s) 99, 201, 210, 270, 533, 764
NdeII GATC 5 cut(s) 53, 66, 164, 290, 592
NlaIII CATG 5 cut(s) 262, 655, 740, 849, 875
NlaIV GGNNCC 2 cut(s) 292, 663
NmuCI GTSAC 1 cut(s) 832
NsiI ATGCAT 1 cut(s) 653
PasI CCCWGGG 1 cut(s) 343
PauI GCGCGC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 729
PfeI GAWTC 3 cut(s) 189, 545, 1022
PkrI GCNGC 4 cut(s) 131, 134, 245, 529
Ple19I CGATCG 1 cut(s) 56
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp6I CCWGG 2 cut(s) 342, 429
PspGI CCWGG 2 cut(s) 342, 429
PspN4I GGNNCC 2 cut(s) 292, 663
PspOMI GGGCCC 1 cut(s) 661
PspPI GGNCC 6 cut(s) 61, 346, 427, 661, 662, 746
PsuI RGATCY 1 cut(s) 290
PteI GCGCGC 1 cut(s) 29
PvuI CGATCG 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 999
RsaI GTAC 4 cut(s) 140, 488, 907, 1003
RsaNI GTAC 4 cut(s) 139, 487, 906, 1002
RseI CAYNNNNRTG 2 cut(s) 741, 901
SaqAI TTAA 2 cut(s) 561, 687
SatI GCNGC 4 cut(s) 130, 133, 244, 528
Sau3AI GATC 5 cut(s) 53, 66, 164, 290, 592
Sau96I GGNCC 6 cut(s) 61, 346, 427, 661, 662, 746
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 344, 431
SduI GDGCHC 3 cut(s) 665, 947, 954
SetI ASST 8 cut(s) 389, 432, 498, 529, 568, 645, 867, 1001
SfaNI GCATC 5 cut(s) 223, 318, 328, 638, 840
SinI GGWCC 3 cut(s) 61, 427, 746
SmiMI CAYNNNNRTG 2 cut(s) 741, 901
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 2 cut(s) 142, 837
SsiI CCGC 2 cut(s) 127, 243
SspMI CTAG 2 cut(s) 704, 716
StyD4I CCNGG 2 cut(s) 342, 429
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 3 cut(s) 61, 491, 806
TaiI ACGT 1 cut(s) 867
TaqI TCGA 1 cut(s) 56
TasI AATT 2 cut(s) 142, 837
TatI WGTACW 4 cut(s) 138, 486, 905, 1001
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 3 cut(s) 189, 545, 1022
Tru1I TTAA 2 cut(s) 561, 687
Tru9I TTAA 2 cut(s) 561, 687
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 832
TseI GCWGC 3 cut(s) 129, 132, 527
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 3 cut(s) 379, 668, 875
TspGWI ACGGA 2 cut(s) 243, 283
TspRI CASTG 1 cut(s) 376
VpaK11BI GGWCC 3 cut(s) 61, 427, 746
XagI CCTNNNNNAGG 1 cut(s) 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 687
XmnI GAANNNNTTC 1 cut(s) 729
XspI CTAG 2 cut(s) 704, 716
Zsp2I ATGCAT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.