RchiOBHm_Chr5g0031301

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0009248
Physical Location & Seq
Reverse (-)
24889215 .. 24892939
3725 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31057

Sequence Viewer

Length: 1047 bp
ATGCCTTCGTCCCCCAAGTTCTTCCACGCCCGCCAACCCCCCTCCGGTCGCCGATCGACGGTCCTGATCATCTGCTTCTGCCTCGTCTTCGGCCTCTCCGGCTTCGTCTTCGGCCTCGTCGCGCTCCACAGCAGCCAGTACAACTGCCTCACCACCCACTCCAGATCGGTGAGGGTCGTCTGGGAGCGAATTGGCAGCACCACCAGAACCAGCCAAAACGGCCTCGTTTTCAGCGACGGAGATGCAAATAGCGGCAGGCATAAAGTCATGGGCTTCGTCGGCATTCAGACCGGCTTCGGATCCGTCGGCCGGAGAGAGTCCCTCCGGAAGACTTGGATGCCGTCCGATGCCCAGGGCCTTCAACGATTGGAAGAAGCCACTGGTTTGGCTTTTAGGTTCATCATTGGTAAAAGCAAGGACAAAGCACAGATGTTGGAGCTGGGAAAAGAAGTGGCGAAATACGACGATTTCTTGCTGTTGGATATTGAAGAGGAGTACAGTAAGCTCCCCTACAAAACATTGGCTTTCTTCAAAGCTGCCTATGCGCTTTTTGATTCCGACTTCTATGTTAAAGCTGACGACGACATTTACTTGAGGCCAGATCGCCTTTCGACGCTCTTGGCAAAAGAGCGCTCTCACTCTCAGACTTACCTTGGATGCATGAAAAAGGGCCCAGTCTTCACCGACCCAAAGCTTAAATGGTTTGAGCCACTAGCGTATTTGCTAGGGAGTGAATACTTTCTCCATGCCTATGGTCCAATCTATGCTCTTTCTGCCGATGTTGTTGCAAGTTTGGTTGCTCTTAGGAATAACAGTTTCCGGATGTTTAGCAATGAGGATGTCACAATTGGTGCATGGATGCTTGCAATGAACGTCAACCATGAGAACAATCAAGCACTATGCTCACCAGAATGTACATCATCATCTATTGCTGTGTGGGATATTCCTAAGTGCTCAGGGCTCTGCAATCCAGAAAAGAAACTGTTAGAACTACATCAAAAGGACAGCTGTACAAAAAGTCCAACGATGGAATCTGATGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

348

Amino Acids

38.99

Weight (kDa)

7.56

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 104 - 297 1.7e-48 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 122
AccIII TCCGGA 2 cut(s) 324, 819
AciI CCGC 2 cut(s) 31, 252
AclWI GGATC 2 cut(s) 294, 307
AcoI YGGCCR 1 cut(s) 307
AfaI GTAC 4 cut(s) 140, 497, 916, 1012
AfeI AGCGCT 1 cut(s) 632
AfiI CCNNNNNNNGG 3 cut(s) 44, 58, 309
AgsI TTSAA 3 cut(s) 362, 488, 532
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 6 cut(s) 439, 505, 536, 575, 694, 1008
AluI AGCT 6 cut(s) 439, 505, 536, 575, 694, 1008
Alw21I GWGCWC 1 cut(s) 956
AlwI GGATC 2 cut(s) 294, 307
Aor13HI TCCGGA 2 cut(s) 324, 819
Aor51HI AGCGCT 1 cut(s) 632
AoxI GGCC 7 cut(s) 91, 112, 220, 307, 355, 596, 670
ApaI GGGCCC 1 cut(s) 674
ApeKI GCWGC 3 cut(s) 132, 195, 536
Asp700I GAANNNNTTC 1 cut(s) 738
AspLEI GCGC 3 cut(s) 124, 547, 633
AspS9I GGNCC 5 cut(s) 61, 355, 670, 671, 755
AsuHPI GGTGA 4 cut(s) 142, 181, 673, 897
AvaII GGWCC 2 cut(s) 61, 755
BaeGI GKGCMC 1 cut(s) 674
BamHI GGATCC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 674, 963
BbsI GAAGAC 4 cut(s) 79, 100, 335, 670
Bbv12I GWGCWC 1 cut(s) 956
BbvI GCAGC 3 cut(s) 144, 207, 523
BccI CCATC 1 cut(s) 1021
BceAI ACGGC 2 cut(s) 235, 325
BcgI CGANNNNNNTGC 4 cut(s) 224, 258, 767, 801
BciT130I CCWGG 1 cut(s) 353
BclI TGATCA 1 cut(s) 66
BfaI CTAG 2 cut(s) 713, 725
BfoI RGCGCY 1 cut(s) 634
BglI GCCNNNNNGGC 2 cut(s) 99, 219
BisI GCNGC 4 cut(s) 133, 196, 253, 537
BlsI GCNGC 4 cut(s) 134, 197, 254, 538
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 2 cut(s) 61, 755
BmgT120I GGNCC 5 cut(s) 61, 355, 670, 671, 755
BmiI GGNNCC 2 cut(s) 301, 672
BmrFI CCNGG 1 cut(s) 353
BmrI ACTGGG 1 cut(s) 668
BmsI GCATC 5 cut(s) 232, 327, 337, 647, 849
BmuI ACTGGG 1 cut(s) 668
BpiI GAAGAC 4 cut(s) 79, 100, 335, 670
BplI GAGNNNNNCTC 2 cut(s) 306, 338
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 955
BpuEI CTTGAG 1 cut(s) 613
BsaJI CCNNGG 3 cut(s) 351, 352, 652
BsaWI WCCGGW 3 cut(s) 44, 324, 819
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 58, 309
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 3 cut(s) 136, 385, 674
Bse3DI GCAATG 2 cut(s) 838, 873
BseAI TCCGGA 2 cut(s) 324, 819
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 3 cut(s) 351, 352, 652
BseGI GGATG 5 cut(s) 342, 662, 828, 844, 864
BseLI CCNNNNNNNGG 3 cut(s) 44, 58, 309
BseMI GCAATG 2 cut(s) 838, 873
BseMII CTCAG 2 cut(s) 656, 969
BseNI ACTGG 3 cut(s) 136, 385, 674
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 1 cut(s) 674
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 3 cut(s) 144, 207, 523
BseYI CCCAGC 1 cut(s) 439
Bsh1236I CGCG 1 cut(s) 122
Bsh1285I CGRYCG 3 cut(s) 49, 56, 310
BshFI GGCC 7 cut(s) 93, 114, 222, 309, 357, 598, 672
BsiEI CGRYCG 3 cut(s) 49, 56, 310
BsiHKAI GWGCWC 1 cut(s) 956
BsiSI CCGG 6 cut(s) 45, 99, 291, 310, 325, 820
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 3 cut(s) 44, 58, 309
BsmFI GGGAC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 7 cut(s) 93, 114, 222, 309, 357, 598, 672
Bsp120I GGGCCC 1 cut(s) 670
Bsp1286I GDGCHC 3 cut(s) 674, 956, 963
Bsp13I TCCGGA 2 cut(s) 324, 819
Bsp1407I TGTACA 2 cut(s) 914, 1010
Bsp143I GATC 5 cut(s) 53, 66, 164, 299, 601
BspACI CCGC 2 cut(s) 31, 252
BspANI GGCC 7 cut(s) 93, 114, 222, 309, 357, 598, 672
BspCNI CTCAG 2 cut(s) 655, 968
BspEI TCCGGA 2 cut(s) 324, 819
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 301, 672
BspPI GGATC 2 cut(s) 294, 307
BsrDI GCAATG 2 cut(s) 838, 873
BsrFI RCCGGY 1 cut(s) 290
BsrGI TGTACA 2 cut(s) 914, 1010
BsrI ACTGG 3 cut(s) 136, 385, 674
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 351, 352, 652
BssMI GATC 5 cut(s) 53, 66, 164, 299, 601
BssT1I CCWWGG 1 cut(s) 652
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 4 cut(s) 61, 500, 815, 984
Bst6I CTCTTC 1 cut(s) 483
BstAUI TGTACA 2 cut(s) 914, 1010
BstC8I GCNNGC 3 cut(s) 31, 257, 864
BstDEI CTNAG 4 cut(s) 642, 803, 948, 955
BstF5I GGATG 5 cut(s) 342, 662, 828, 844, 864
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 634
BstHHI GCGC 3 cut(s) 124, 547, 633
BstKTI GATC 5 cut(s) 56, 69, 167, 302, 604
BstMBI GATC 5 cut(s) 53, 66, 164, 299, 601
BstMCI CGRYCG 3 cut(s) 49, 56, 310
BstMWI GCNNNNNNNGC 5 cut(s) 99, 219, 279, 542, 773
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 674
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 3 cut(s) 144, 207, 523
BstV2I GAAGAC 4 cut(s) 79, 100, 335, 670
BstX2I RGATCY 1 cut(s) 299
BstXI CCANNNNNNTGG 2 cut(s) 385, 752
BstYI RGATCY 1 cut(s) 299
BstZI CGGCCG 1 cut(s) 307
BsuRI GGCC 7 cut(s) 93, 114, 222, 309, 357, 598, 672
BtsCI GGATG 5 cut(s) 342, 662, 828, 844, 864
BtsIMutI CAGTG 1 cut(s) 378
Cac8I GCNNGC 3 cut(s) 31, 257, 864
CfoI GCGC 3 cut(s) 124, 547, 633
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 5 cut(s) 61, 355, 670, 671, 755
CseI GACGC 1 cut(s) 622
Csp6I GTAC 4 cut(s) 139, 496, 915, 1011
CviAII CATG 5 cut(s) 268, 661, 746, 855, 881
CviQI GTAC 4 cut(s) 139, 496, 915, 1011
DdeI CTNAG 4 cut(s) 642, 803, 948, 955
DpnI GATC 5 cut(s) 55, 68, 166, 301, 603
DpnII GATC 5 cut(s) 53, 66, 164, 299, 601
EaeI YGGCCR 1 cut(s) 307
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
EclXI CGGCCG 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 652
Eco24I GRGCYC 2 cut(s) 674, 963
Eco47I GGWCC 2 cut(s) 61, 755
Eco47III AGCGCT 1 cut(s) 632
Eco52I CGGCCG 1 cut(s) 307
EcoO109I RGGNCCY 2 cut(s) 355, 670
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 652
EcoT22I ATGCAT 1 cut(s) 662
EcoT38I GRGCYC 2 cut(s) 674, 963
ErhI CCWWGG 1 cut(s) 652
FaeI CATG 5 cut(s) 271, 664, 749, 858, 884
FaqI GGGAC 1 cut(s) 304
FatI CATG 5 cut(s) 267, 660, 745, 854, 880
FauI CCCGC 1 cut(s) 38
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 4 cut(s) 133, 196, 253, 537
FokI GGATG 5 cut(s) 349, 669, 835, 851, 871
FriOI GRGCYC 2 cut(s) 674, 963
Fsp4HI GCNGC 4 cut(s) 133, 196, 253, 537
FspBI CTAG 2 cut(s) 713, 725
GlaI GCGC 3 cut(s) 123, 546, 632
GluI GCNGC 4 cut(s) 133, 196, 253, 537
GsaI CCCAGC 1 cut(s) 443
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 634
HaeIII GGCC 7 cut(s) 93, 114, 222, 309, 357, 598, 672
HapII CCGG 6 cut(s) 45, 99, 291, 310, 325, 820
HgaI GACGC 1 cut(s) 622
HhaI GCGC 3 cut(s) 124, 547, 633
Hin1II CATG 5 cut(s) 271, 664, 749, 858, 884
Hin6I GCGC 3 cut(s) 122, 545, 631
HinP1I GCGC 3 cut(s) 122, 545, 631
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 3 cut(s) 317, 554, 1031
HpaII CCGG 6 cut(s) 45, 99, 291, 310, 325, 820
HphI GGTGA 4 cut(s) 142, 181, 673, 897
Hpy166II GTNNAC 1 cut(s) 877
Hpy188I TCNGA 6 cut(s) 288, 299, 346, 559, 645, 1036
Hpy188III TCNNGA 5 cut(s) 64, 162, 325, 820, 971
Hpy8I GTNNAC 1 cut(s) 877
Hpy99I CGWCG 8 cut(s) 61, 122, 239, 281, 308, 467, 584, 616
HpyAV CCTTC 2 cut(s) 15, 368
HpyCH4III ACNGT 4 cut(s) 61, 500, 815, 984
HpyCH4IV ACGT 1 cut(s) 873
HpyCH4V TGCA 6 cut(s) 245, 660, 788, 854, 866, 966
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 219, 279, 542, 773
HpyF3I CTNAG 4 cut(s) 642, 803, 948, 955
HpySE526I ACGT 1 cut(s) 873
Hsp92II CATG 5 cut(s) 271, 664, 749, 858, 884
HspAI GCGC 3 cut(s) 122, 545, 631
Kpn2I TCCGGA 2 cut(s) 324, 819
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 5 cut(s) 53, 66, 164, 299, 601
LmnI GCTCC 4 cut(s) 129, 184, 436, 510
Lsp1109I GCAGC 3 cut(s) 144, 207, 523
LweI GCATC 5 cut(s) 232, 327, 337, 647, 849
MaeI CTAG 2 cut(s) 713, 725
MaeII ACGT 1 cut(s) 873
MaeIII GTNAC 1 cut(s) 841
MalI GATC 5 cut(s) 55, 68, 166, 301, 603
MboI GATC 5 cut(s) 53, 66, 164, 299, 601
MboII GAAGA 8 cut(s) 13, 79, 100, 340, 383, 500, 520, 670
MfeI CAATTG 1 cut(s) 846
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 3 cut(s) 674, 956, 963
MluCI AATT 2 cut(s) 189, 846
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 4 cut(s) 414, 459, 582, 1046
Mph1103I ATGCAT 1 cut(s) 662
MroI TCCGGA 2 cut(s) 324, 819
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 2 cut(s) 570, 696
MslI CAYNNNNRTG 2 cut(s) 750, 910
MspA1I CMGCKG 1 cut(s) 1008
MspI CCGG 6 cut(s) 45, 99, 291, 310, 325, 820
MspR9I CCNGG 1 cut(s) 353
MunI CAATTG 1 cut(s) 846
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 5 cut(s) 99, 219, 279, 542, 773
NdeII GATC 5 cut(s) 53, 66, 164, 299, 601
NlaIII CATG 5 cut(s) 271, 664, 749, 858, 884
NlaIV GGNNCC 2 cut(s) 301, 672
NmuCI GTSAC 1 cut(s) 841
NsiI ATGCAT 1 cut(s) 662
PasI CCCWGGG 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 2 cut(s) 554, 1031
PkrI GCNGC 4 cut(s) 134, 197, 254, 538
Ple19I CGATCG 1 cut(s) 56
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 439
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 301, 672
PspOMI GGGCCC 1 cut(s) 670
PspPI GGNCC 5 cut(s) 61, 355, 670, 671, 755
PsuI RGATCY 1 cut(s) 299
PvuI CGATCG 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 1008
RsaI GTAC 4 cut(s) 140, 497, 916, 1012
RsaNI GTAC 4 cut(s) 139, 496, 915, 1011
RseI CAYNNNNRTG 2 cut(s) 750, 910
SaqAI TTAA 2 cut(s) 570, 696
SatI GCNGC 4 cut(s) 133, 196, 253, 537
Sau3AI GATC 5 cut(s) 53, 66, 164, 299, 601
Sau96I GGNCC 5 cut(s) 61, 355, 670, 671, 755
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 3 cut(s) 674, 956, 963
SetI ASST 9 cut(s) 398, 441, 507, 538, 577, 654, 696, 876, 1010
SfaNI GCATC 5 cut(s) 232, 327, 337, 647, 849
SinI GGWCC 2 cut(s) 61, 755
SmiMI CAYNNNNRTG 2 cut(s) 750, 910
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
Sse9I AATT 2 cut(s) 189, 846
SsiI CCGC 2 cut(s) 31, 252
SspMI CTAG 2 cut(s) 713, 725
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 1 cut(s) 652
TaaI ACNGT 4 cut(s) 61, 500, 815, 984
TaiI ACGT 1 cut(s) 876
TaqI TCGA 2 cut(s) 56, 611
TasI AATT 2 cut(s) 189, 846
TatI WGTACW 4 cut(s) 138, 495, 914, 1010
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 2 cut(s) 554, 1031
Tru1I TTAA 2 cut(s) 570, 696
Tru9I TTAA 2 cut(s) 570, 696
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 3 cut(s) 132, 195, 536
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 3 cut(s) 388, 677, 884
TspGWI ACGGA 2 cut(s) 252, 292
TspRI CASTG 1 cut(s) 385
VpaK11BI GGWCC 2 cut(s) 61, 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 2 cut(s) 713, 725
Zsp2I ATGCAT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.