Rh5BG216900

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0009248
Physical Location & Seq
Reverse (-)
25045538 .. 25049765
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG216900.1

Sequence Viewer

Length: 1011 bp
ATGCCTTCGTCCCCCAAGTTCTTCCACGCGCGCCAACCCCCCTCCGGTCGCCGATCGACGGTCCTGATCATCTGCTTCTGCCTCGTCTTCGGCCTCTCCGGCTTCGTCTTCGGCCTCGTCGCGCTCCACAGCAGCCAGTACAACTGCCTCACCACCCGGTCCAGATCGGTGAGGGTCGTCTGGGAGCGAATTGGCAGCACCACCAGAACCAGCCAAAACGGCCTCGTGTTCAGCGACGGAGATGCAAATAGCGGCAGGCATAAAGTCATGGGCTTCGTCGGCATTCAGACCGGCTTCGGATCCGTCGGCCGGAGAGAGTCCCTCCGGAAGACTTGGATGCCGTCCGATGCCCAGGGCCTTCAACGATTGGAAGAAGCCACTGGTTTGGCTTTTAGGTTCATCATTGGTAAAAGCAAGGACAAAGCAAAGATGTTGGAGCTGGGAAAGGAAGTGGCGAAATACGACGATTTCTTGCTGTTGGATATTGAAGAGGAGTACAGTAAGCTCCCCTACAAAACATTGGCTTTCTTCAAAGCTGCCTATGCGCTTTTTGATTCCGACTTCTATGTTAAAGCTGACGACGACATTTACTTGAGGCCAGATCGCCTTTCGACGCTCTTGGCAAAAGAGCGCTCTCACTCTCAGACTTACCTTGGATGCATGAAAAAGGGCCCAGTCTTCACCGACCCAAAGCTTAAATGGTTTGAGCCACTAGCGTATTTGCTAGGGAGTGAATACTTTCTCCATGCCTATGGTCCAATCTATGCTCTTTCTGCTGATGTTGTTGCAAGTTTGGTTGCTCTTAGGAATAACAGGCAAGTTTATTTTCACAATATAACCTTGGACCTCTCTGGTGTATTATTATTTCAAGCATTTATATTGTGCATTTCAAATTTTAGTTTAGTCAACGTTATGCAATTGTTGGTGTCCATCGTAGCATGTATACCGGGCAGAAGGGCTGGTGGTGTGGCCTTTTTTACTTCTGCTCCGGCTCCTTTACTTATAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

336

Amino Acids

37.48

Weight (kDa)

9.36

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 104 - 275 6.1e-42 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1004
AccI GTMKAC 1 cut(s) 943
AccII CGCG 3 cut(s) 29, 31, 122
AccIII TCCGGA 1 cut(s) 324
AciI CCGC 1 cut(s) 252
AclI AACGTT 1 cut(s) 909
AclWI GGATC 2 cut(s) 294, 307
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 1 cut(s) 892
AfaI GTAC 2 cut(s) 140, 497
AfeI AGCGCT 1 cut(s) 632
AfiI CCNNNNNNNGG 3 cut(s) 44, 58, 309
AgsI TTSAA 5 cut(s) 362, 488, 532, 869, 891
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 5 cut(s) 439, 505, 536, 575, 694
AluI AGCT 5 cut(s) 439, 505, 536, 575, 694
AlwI GGATC 2 cut(s) 294, 307
Aor13HI TCCGGA 1 cut(s) 324
Aor51HI AGCGCT 1 cut(s) 632
AoxI GGCC 8 cut(s) 91, 112, 220, 307, 355, 596, 670, 969
ApaI GGGCCC 1 cut(s) 674
ApeKI GCWGC 3 cut(s) 132, 195, 536
ApoI RAATTY 1 cut(s) 892
Asp700I GAANNNNTTC 1 cut(s) 738
AspLEI GCGC 5 cut(s) 31, 33, 124, 547, 633
AspS9I GGNCC 7 cut(s) 61, 159, 355, 670, 671, 755, 844
AsuC2I CCSGG 2 cut(s) 157, 948
AsuHPI GGTGA 3 cut(s) 142, 181, 673
AvaII GGWCC 4 cut(s) 61, 159, 755, 844
BaeGI GKGCMC 1 cut(s) 674
BamHI GGATCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 674
BauI CACGAG 1 cut(s) 224
BbsI GAAGAC 4 cut(s) 79, 100, 335, 670
BbvI GCAGC 3 cut(s) 144, 207, 523
BccI CCATC 1 cut(s) 938
BceAI ACGGC 2 cut(s) 235, 325
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 1 cut(s) 353
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 2 cut(s) 157, 948
BfaI CTAG 2 cut(s) 713, 725
BfoI RGCGCY 1 cut(s) 634
BglI GCCNNNNNGGC 2 cut(s) 99, 219
BisI GCNGC 4 cut(s) 133, 196, 253, 537
BlsI GCNGC 4 cut(s) 134, 197, 254, 538
Bme1390I CCNGG 3 cut(s) 157, 353, 948
Bme18I GGWCC 4 cut(s) 61, 159, 755, 844
BmgT120I GGNCC 7 cut(s) 61, 159, 355, 670, 671, 755, 844
BmiI GGNNCC 3 cut(s) 301, 672, 993
BmrFI CCNGG 3 cut(s) 157, 353, 948
BmrI ACTGGG 1 cut(s) 668
BmsI GCATC 4 cut(s) 232, 327, 337, 647
BmuI ACTGGG 1 cut(s) 668
BpiI GAAGAC 4 cut(s) 79, 100, 335, 670
BplI GAGNNNNNCTC 2 cut(s) 306, 338
BpuEI CTTGAG 1 cut(s) 613
BpuMI CCSGG 2 cut(s) 157, 948
BsaJI CCNNGG 4 cut(s) 351, 352, 652, 840
BsaWI WCCGGW 2 cut(s) 44, 324
BsaXI ACNNNNNCTCC 2 cut(s) 970, 1000
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 58, 309
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 3 cut(s) 136, 385, 674
BseAI TCCGGA 1 cut(s) 324
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 4 cut(s) 351, 352, 652, 840
BseGI GGATG 2 cut(s) 342, 662
BseLI CCNNNNNNNGG 3 cut(s) 44, 58, 309
BseMII CTCAG 1 cut(s) 656
BseNI ACTGG 3 cut(s) 136, 385, 674
BsePI GCGCGC 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 1 cut(s) 674
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 3 cut(s) 144, 207, 523
BseYI CCCAGC 1 cut(s) 439
Bsh1236I CGCG 3 cut(s) 29, 31, 122
Bsh1285I CGRYCG 3 cut(s) 49, 56, 310
BshFI GGCC 8 cut(s) 93, 114, 222, 309, 357, 598, 672, 971
BsiEI CGRYCG 3 cut(s) 49, 56, 310
BsiSI CCGG 8 cut(s) 45, 99, 157, 291, 310, 325, 947, 989
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 3 cut(s) 44, 58, 309
BsmFI GGGAC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 8 cut(s) 93, 114, 222, 309, 357, 598, 672, 971
Bsp120I GGGCCC 1 cut(s) 670
Bsp1286I GDGCHC 1 cut(s) 674
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 5 cut(s) 53, 66, 164, 299, 601
BspACI CCGC 1 cut(s) 252
BspANI GGCC 8 cut(s) 93, 114, 222, 309, 357, 598, 672, 971
BspCNI CTCAG 1 cut(s) 655
BspEI TCCGGA 1 cut(s) 324
BspFNI CGCG 3 cut(s) 29, 31, 122
BspLI GGNNCC 3 cut(s) 301, 672, 993
BspPI GGATC 2 cut(s) 294, 307
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 3 cut(s) 136, 385, 674
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 4 cut(s) 351, 352, 652, 840
BssHII GCGCGC 1 cut(s) 29
BssMI GATC 5 cut(s) 53, 66, 164, 299, 601
BssNAI GTATAC 1 cut(s) 944
BssSI CACGAG 1 cut(s) 224
BssT1I CCWWGG 2 cut(s) 652, 840
Bst1107I GTATAC 1 cut(s) 944
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 61, 500
Bst6I CTCTTC 1 cut(s) 483
BstC8I GCNNGC 2 cut(s) 31, 257
BstDEI CTNAG 2 cut(s) 642, 803
BstF5I GGATG 2 cut(s) 342, 662
BstFNI CGCG 3 cut(s) 29, 31, 122
BstH2I RGCGCY 1 cut(s) 634
BstHHI GCGC 5 cut(s) 31, 33, 124, 547, 633
BstKTI GATC 5 cut(s) 56, 69, 167, 302, 604
BstMBI GATC 5 cut(s) 53, 66, 164, 299, 601
BstMCI CGRYCG 3 cut(s) 49, 56, 310
BstMWI GCNNNNNNNGC 5 cut(s) 99, 219, 279, 542, 773
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 942
BstSCI CCNGG 3 cut(s) 155, 351, 946
BstSLI GKGCMC 1 cut(s) 674
BstUI CGCG 3 cut(s) 29, 31, 122
BstV1I GCAGC 3 cut(s) 144, 207, 523
BstV2I GAAGAC 4 cut(s) 79, 100, 335, 670
BstX2I RGATCY 1 cut(s) 299
BstXI CCANNNNNNTGG 2 cut(s) 385, 752
BstYI RGATCY 1 cut(s) 299
BstZ17I GTATAC 1 cut(s) 944
BstZI CGGCCG 1 cut(s) 307
BsuRI GGCC 8 cut(s) 93, 114, 222, 309, 357, 598, 672, 971
BtsCI GGATG 2 cut(s) 342, 662
BtsIMutI CAGTG 1 cut(s) 378
Cac8I GCNNGC 2 cut(s) 31, 257
CfoI GCGC 5 cut(s) 31, 33, 124, 547, 633
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 7 cut(s) 61, 159, 355, 670, 671, 755, 844
CseI GACGC 1 cut(s) 622
Csp6I GTAC 2 cut(s) 139, 496
CviAII CATG 4 cut(s) 268, 661, 746, 939
CviQI GTAC 2 cut(s) 139, 496
DdeI CTNAG 2 cut(s) 642, 803
DpnI GATC 5 cut(s) 55, 68, 166, 301, 603
DpnII GATC 5 cut(s) 53, 66, 164, 299, 601
EaeI YGGCCR 1 cut(s) 307
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
EclXI CGGCCG 1 cut(s) 307
Eco130I CCWWGG 2 cut(s) 652, 840
Eco24I GRGCYC 1 cut(s) 674
Eco47I GGWCC 4 cut(s) 61, 159, 755, 844
Eco47III AGCGCT 1 cut(s) 632
Eco52I CGGCCG 1 cut(s) 307
EcoO109I RGGNCCY 2 cut(s) 355, 670
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 2 cut(s) 652, 840
EcoT22I ATGCAT 1 cut(s) 662
EcoT38I GRGCYC 1 cut(s) 674
ErhI CCWWGG 2 cut(s) 652, 840
FaeI CATG 4 cut(s) 271, 664, 749, 942
FaqI GGGAC 1 cut(s) 304
FatI CATG 4 cut(s) 267, 660, 745, 938
FbaI TGATCA 1 cut(s) 66
FblI GTMKAC 1 cut(s) 943
Fnu4HI GCNGC 4 cut(s) 133, 196, 253, 537
FokI GGATG 2 cut(s) 349, 669
FriOI GRGCYC 1 cut(s) 674
Fsp4HI GCNGC 4 cut(s) 133, 196, 253, 537
FspBI CTAG 2 cut(s) 713, 725
GlaI GCGC 5 cut(s) 30, 32, 123, 546, 632
GluI GCNGC 4 cut(s) 133, 196, 253, 537
GsaI CCCAGC 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 634
HaeIII GGCC 8 cut(s) 93, 114, 222, 309, 357, 598, 672, 971
HapII CCGG 8 cut(s) 45, 99, 157, 291, 310, 325, 947, 989
HgaI GACGC 1 cut(s) 622
HhaI GCGC 5 cut(s) 31, 33, 124, 547, 633
Hin1II CATG 4 cut(s) 271, 664, 749, 942
Hin6I GCGC 5 cut(s) 29, 31, 122, 545, 631
HinP1I GCGC 5 cut(s) 29, 31, 122, 545, 631
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 2 cut(s) 317, 554
HpaII CCGG 8 cut(s) 45, 99, 157, 291, 310, 325, 947, 989
HphI GGTGA 3 cut(s) 142, 181, 673
Hpy166II GTNNAC 2 cut(s) 907, 944
Hpy188I TCNGA 5 cut(s) 288, 299, 346, 559, 645
Hpy188III TCNNGA 3 cut(s) 64, 162, 325
Hpy8I GTNNAC 2 cut(s) 907, 944
Hpy99I CGWCG 8 cut(s) 61, 122, 239, 281, 308, 467, 584, 616
HpyAV CCTTC 3 cut(s) 15, 368, 948
HpyCH4III ACNGT 2 cut(s) 61, 500
HpyCH4IV ACGT 1 cut(s) 909
HpyCH4V TGCA 5 cut(s) 245, 660, 788, 885, 916
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 219, 279, 542, 773
HpyF3I CTNAG 2 cut(s) 642, 803
HpySE526I ACGT 1 cut(s) 909
Hsp92II CATG 4 cut(s) 271, 664, 749, 942
HspAI GCGC 5 cut(s) 29, 31, 122, 545, 631
Kpn2I TCCGGA 1 cut(s) 324
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 5 cut(s) 53, 66, 164, 299, 601
LmnI GCTCC 6 cut(s) 129, 184, 436, 510, 991, 997
Lsp1109I GCAGC 3 cut(s) 144, 207, 523
LweI GCATC 4 cut(s) 232, 327, 337, 647
MaeI CTAG 2 cut(s) 713, 725
MaeII ACGT 1 cut(s) 909
MalI GATC 5 cut(s) 55, 68, 166, 301, 603
MboI GATC 5 cut(s) 53, 66, 164, 299, 601
MboII GAAGA 8 cut(s) 13, 79, 100, 340, 383, 500, 520, 670
MfeI CAATTG 1 cut(s) 917
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 674
MluCI AATT 3 cut(s) 189, 892, 917
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 3 cut(s) 414, 459, 582
Mph1103I ATGCAT 1 cut(s) 662
MroI TCCGGA 1 cut(s) 324
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 2 cut(s) 570, 696
MslI CAYNNNNRTG 1 cut(s) 750
MspI CCGG 8 cut(s) 45, 99, 157, 291, 310, 325, 947, 989
MspR9I CCNGG 3 cut(s) 157, 353, 948
MunI CAATTG 1 cut(s) 917
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 3 cut(s) 29, 31, 122
MwoI GCNNNNNNNGC 5 cut(s) 99, 219, 279, 542, 773
NciI CCSGG 2 cut(s) 157, 948
NdeII GATC 5 cut(s) 53, 66, 164, 299, 601
NlaIII CATG 4 cut(s) 271, 664, 749, 942
NlaIV GGNNCC 3 cut(s) 301, 672, 993
NsiI ATGCAT 1 cut(s) 662
NspI RCATGY 1 cut(s) 942
PasI CCCWGGG 1 cut(s) 352
PauI GCGCGC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 1 cut(s) 554
PkrI GCNGC 4 cut(s) 134, 197, 254, 538
Ple19I CGATCG 1 cut(s) 56
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PsiI TTATAA 1 cut(s) 1004
Psp1406I AACGTT 1 cut(s) 909
Psp6I CCWGG 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 439
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 3 cut(s) 301, 672, 993
PspOMI GGGCCC 1 cut(s) 670
PspPI GGNCC 7 cut(s) 61, 159, 355, 670, 671, 755, 844
PsuI RGATCY 1 cut(s) 299
PteI GCGCGC 1 cut(s) 29
PvuI CGATCG 1 cut(s) 56
RsaI GTAC 2 cut(s) 140, 497
RsaNI GTAC 2 cut(s) 139, 496
RseI CAYNNNNRTG 1 cut(s) 750
SaqAI TTAA 2 cut(s) 570, 696
SatI GCNGC 4 cut(s) 133, 196, 253, 537
Sau3AI GATC 5 cut(s) 53, 66, 164, 299, 601
Sau96I GGNCC 7 cut(s) 61, 159, 355, 670, 671, 755, 844
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 3 cut(s) 157, 353, 948
SduI GDGCHC 1 cut(s) 674
SfaNI GCATC 4 cut(s) 232, 327, 337, 647
SinI GGWCC 4 cut(s) 61, 159, 755, 844
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
Sse9I AATT 3 cut(s) 189, 892, 917
SsiI CCGC 1 cut(s) 252
SspMI CTAG 2 cut(s) 713, 725
StyD4I CCNGG 3 cut(s) 155, 351, 946
StyI CCWWGG 2 cut(s) 652, 840
TaaI ACNGT 2 cut(s) 61, 500
TaiI ACGT 1 cut(s) 912
TaqI TCGA 2 cut(s) 56, 611
TasI AATT 3 cut(s) 189, 892, 917
TatI WGTACW 2 cut(s) 138, 495
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 2 cut(s) 570, 696
Tru9I TTAA 2 cut(s) 570, 696
TscAI CASTG 1 cut(s) 385
TseI GCWGC 3 cut(s) 132, 195, 536
TspDTI ATGAA 2 cut(s) 388, 677
TspGWI ACGGA 2 cut(s) 252, 292
TspRI CASTG 1 cut(s) 385
VpaK11BI GGWCC 4 cut(s) 61, 159, 755, 844
XapI RAATTY 1 cut(s) 892
XceI RCATGY 1 cut(s) 942
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XmiI GTMKAC 1 cut(s) 943
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 2 cut(s) 713, 725
Zsp2I ATGCAT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.