Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009248

Physical Location & Seq

Genomic Coordinates Forward (+)

19661073 .. 19664855

Gene Structure 3783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g18800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCCTTCATCCCCTAAGTTCTTCCACGCGCGCCAACCTCCCTCCGCTCTCAGACCAACCGTCCTGATCGTCGCCTTTTCCCTCGTAATCGGACTCTCCGGTTTCATCGTCGGAATCGTCTCGGTTCTCCACCCGAGCCAGTACAACTGCCTGATCGGCAGCGCCAGATCGGTGAAGGTGGTTTGGGAAACAAGTGGCGGCGGCGGTACCAGCAGCAGCACTCAAAACGGTCTCGTTTTGGGGGTTGGAGATGGAAATGATGATAACAAGAGGCACAAAGTGATGGGCTTTGTGGGGATTCAAACCGGGTTCCGATCCACGGGTCGCAGACAGTCCTTGAGGAAGACTTGGATGCCGTCCGATGCACTGGGCCTTCAACGCTTGGAAGAAGCCACTGGTTTGGCTTTCAGGTTTGTGATTGGTAAAACCAAGGATAAAGCAGAGATGGCGGAACTCGCCAAAGAGGTGGCTAAATTTGATGATTTCCTGCTATTGGATATTGAAGAGGAGTACAGTAAGCTCCCCTACAAAACGTTGGCTTTCTTCAAAGTTGCCTATGCACTTTATGATGCTGACTTCTATGTTAAAGCTGATGACGACATATACTTAAGGCCAGATCGCCTTTCACTGCTCTTGGCAAAAGAGCGTTCTCACTCTCAGACATACCTTGGGTGCATGAAAAAGGGCCCCGTCTTCACAGACCCAAAGCTTAAGTGGTATGAGCCACTTTCCTATTTGCTTGGAAGCGAGTACTTTCTCCATGCCTATGGTCCAATATATGCTCTTTCTGCTGATGTTGTTGCAAGTTTGGTTGCTCTTAGAAACAACAGTTTTCGAATGTTTAGCAATGAGGATGTCACAATTGGTGCGTGGATGCTTGCAATGAATGTTAACCATGAGAACAATAAAGCATTGTGCTCACAGGAGTGTACACCATCATCAATCGCTGTGTGGGATATTCCGAAGTGCTCTGGGCTCTGCAATCCAGAAACCAAATTGCTAGAACTCCACCAGATGGACAGCTGCTCAAAAACTCCGACGGTGGAATCTGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Galactosyl_T

Protein Analysis

353

Amino Acids

38.98

Weight (kDa)

6.67

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53290 AT3G14960
fragaria_vesca	FvH4_3g18550
malus_domestica	MD03G1241400.v1.1 MD11G1260700.v1.1
prunus_persica	Prupe.4G167600_v2.0.a1 Prupe.4G167600_v2.0.a1 Prupe.4G167600_v2.0.a1 Prupe.4G167600_v2.0.a1
pyrus_communis	pycom03g18800 pycom11g23010
rosa_chinensis	RchiOBHm_Chr5g0031301
rosa_laevigata	RLG00000033299
rosa_multiflora	Rmu_sc0006236.1_g000010 Rmu_sc0007782.1_g000020
rosa_roxburghii	Rroxscaffold_1G00048990
rosa_rugosa	Rorug05G0123900
rosa_samantha	Rh5AG217200 Rh5BG216900 Rh5CG240500 Rh5DG222000
rosa_wichuraiana	Rw5G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	1015
AccBSI	CCGCTC	1 cut(s)	47
AccII	CGCG	2 cut(s)	29, 31
AciI	CCGC	5 cut(s)	45, 198, 201, 204, 449
AclI	AACGTT	1 cut(s)	533
AclWI	GGATC	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	473
AdeI	CACNNNGTG	1 cut(s)	280
AfaI	GTAC	5 cut(s)	143, 208, 512, 752, 931
AfiI	CCNNNNNNNGG	3 cut(s)	319, 493, 1015
AflII	CTTAAG	2 cut(s)	607, 710
AgsI	TTSAA	4 cut(s)	302, 377, 503, 547
AhdI	GACNNNNNGTC	1 cut(s)	59
AleI	CACNNNNGTG	1 cut(s)	925
AluBI	AGCT	4 cut(s)	520, 590, 709, 1023
AluI	AGCT	4 cut(s)	520, 590, 709, 1023
Alw21I	GWGCWC	2 cut(s)	920, 971
Alw26I	GTCTC	2 cut(s)	124, 236
AlwI	GGATC	1 cut(s)	309
Ama87I	CYCGRG	1 cut(s)	133
AoxI	GGCC	3 cut(s)	370, 611, 685
ApaI	GGGCCC	1 cut(s)	689
ApeKI	GCWGC	4 cut(s)	159, 213, 216, 1023
ApoI	RAATTY	1 cut(s)	473
Asp718I	GGTACC	1 cut(s)	206
AspLEI	GCGC	3 cut(s)	31, 33, 164
AspS9I	GGNCC	4 cut(s)	370, 685, 686, 770
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	184
AsuII	TTCGAA	1 cut(s)	835
AvaI	CYCGRG	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	770
BaeGI	GKGCMC	1 cut(s)	689
BanI	GGYRCC	1 cut(s)	206
BanII	GRGCYC	2 cut(s)	689, 978
BbsI	GAAGAC	2 cut(s)	350, 685
Bbv12I	GWGCWC	2 cut(s)	920, 971
BbvI	GCAGC	4 cut(s)	171, 225, 228, 1010
BccI	CCATC	5 cut(s)	245, 277, 439, 943, 1009
BceAI	ACGGC	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	124, 236
BfaI	CTAG	1 cut(s)	1001
BfoI	RGCGCY	1 cut(s)	165
BfrI	CTTAAG	2 cut(s)	607, 710
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	6 cut(s)	160, 199, 202, 214, 217, 1024
BlsI	GCNGC	6 cut(s)	161, 200, 203, 215, 218, 1025
BmcAI	AGTACT	1 cut(s)	752
Bme1390I	CCNGG	1 cut(s)	307
Bme18I	GGWCC	1 cut(s)	770
BmeRI	GACNNNNNGTC	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	133
BmgT120I	GGNCC	4 cut(s)	370, 685, 686, 770
BmiI	GGNNCC	4 cut(s)	208, 311, 687, 688
BmrFI	CCNGG	1 cut(s)	307
BmrI	ACTGGG	1 cut(s)	377
BmsI	GCATC	4 cut(s)	342, 352, 559, 864
BmuI	ACTGGG	1 cut(s)	377
BpiI	GAAGAC	2 cut(s)	350, 685
Bpu14I	TTCGAA	1 cut(s)	835
BpuEI	CTTGAG	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	318, 429, 667
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 493, 1015
Bse1I	ACTGG	3 cut(s)	139, 372, 400
Bse3DI	GCAATG	2 cut(s)	853, 888
BseDI	CCNNGG	3 cut(s)	318, 429, 667
BseGI	GGATG	4 cut(s)	8, 357, 859, 879
BseLI	CCNNNNNNNGG	3 cut(s)	319, 493, 1015
BseMI	GCAATG	2 cut(s)	853, 888
BseMII	CTCAG	2 cut(s)	64, 671
BseNI	ACTGG	3 cut(s)	139, 372, 400
BsePI	GCGCGC	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	521
BseSI	GKGCMC	1 cut(s)	689
BseXI	GCAGC	4 cut(s)	171, 225, 228, 1010
Bsh1236I	CGCG	2 cut(s)	29, 31
BshFI	GGCC	3 cut(s)	372, 613, 687
BshNI	GGYRCC	1 cut(s)	206
BsiHKAI	GWGCWC	2 cut(s)	920, 971
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	99, 306
BslI	CCNNNNNNNGG	3 cut(s)	319, 493, 1015
BsmAI	GTCTC	2 cut(s)	124, 236
BsmBI	CGTCTC	1 cut(s)	124
BsnI	GGCC	3 cut(s)	372, 613, 687
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	133
Bsp119I	TTCGAA	1 cut(s)	835
Bsp120I	GGGCCC	1 cut(s)	685
Bsp1286I	GDGCHC	4 cut(s)	689, 920, 971, 978
Bsp1407I	TGTACA	1 cut(s)	929
Bsp143I	GATC	5 cut(s)	66, 153, 167, 314, 616
BspACI	CCGC	5 cut(s)	45, 198, 201, 204, 449
BspANI	GGCC	3 cut(s)	372, 613, 687
BspCNI	CTCAG	2 cut(s)	63, 670
BspFNI	CGCG	2 cut(s)	29, 31
BspLI	GGNNCC	4 cut(s)	208, 311, 687, 688
BspPI	GGATC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	835
BspT107I	GGYRCC	1 cut(s)	206
BspTI	CTTAAG	2 cut(s)	607, 710
BspTNI	GGTCTC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	47
BsrDI	GCAATG	2 cut(s)	853, 888
BsrGI	TGTACA	1 cut(s)	929
BsrI	ACTGG	3 cut(s)	139, 372, 400
BssECI	CCNNGG	3 cut(s)	318, 429, 667
BssHII	GCGCGC	1 cut(s)	29
BssMI	GATC	5 cut(s)	66, 153, 167, 314, 616
BssT1I	CCWWGG	2 cut(s)	429, 667
Bst4CI	ACNGT	6 cut(s)	61, 230, 333, 515, 830, 1042
Bst6I	CTCTTC	1 cut(s)	498
BstAFI	CTTAAG	2 cut(s)	607, 710
BstAUI	TGTACA	1 cut(s)	929
BstBI	TTCGAA	1 cut(s)	835
BstC8I	GCNNGC	2 cut(s)	31, 879
BstDEI	CTNAG	4 cut(s)	15, 50, 657, 818
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	4 cut(s)	8, 357, 859, 879
BstFNI	CGCG	2 cut(s)	29, 31
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	3 cut(s)	31, 33, 164
BstKTI	GATC	5 cut(s)	69, 156, 170, 317, 619
BstMAI	GTCTC	2 cut(s)	124, 236
BstMBI	GATC	5 cut(s)	66, 153, 167, 314, 616
BstMWI	GCNNNNNNNGC	6 cut(s)	156, 210, 378, 446, 455, 788
BstSCI	CCNGG	1 cut(s)	305
BstSLI	GKGCMC	1 cut(s)	689
BstUI	CGCG	2 cut(s)	29, 31
BstV1I	GCAGC	4 cut(s)	171, 225, 228, 1010
BstV2I	GAAGAC	2 cut(s)	350, 685
BstXI	CCANNNNNNTGG	3 cut(s)	400, 466, 767
BsuRI	GGCC	3 cut(s)	372, 613, 687
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	4 cut(s)	8, 357, 859, 879
BtsI	GCAGTG	1 cut(s)	626
BtsIMutI	CAGTG	3 cut(s)	365, 393, 626
Cac8I	GCNNGC	2 cut(s)	31, 879
CfoI	GCGC	3 cut(s)	31, 33, 164
Cfr13I	GGNCC	4 cut(s)	370, 685, 686, 770
Csp6I	GTAC	5 cut(s)	142, 207, 511, 751, 930
CviAII	CATG	3 cut(s)	676, 761, 896
CviQI	GTAC	5 cut(s)	142, 207, 511, 751, 930
DdeI	CTNAG	4 cut(s)	15, 50, 657, 818
DpnI	GATC	5 cut(s)	68, 155, 169, 316, 618
DpnII	GATC	5 cut(s)	66, 153, 167, 314, 616
DraIII	CACNNNGTG	1 cut(s)	280
DriI	GACNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	498
Eam1105I	GACNNNNNGTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	429, 667
Eco24I	GRGCYC	2 cut(s)	689, 978
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	770
Eco88I	CYCGRG	1 cut(s)	133
EcoO109I	RGGNCCY	2 cut(s)	685, 686
EcoT14I	CCWWGG	2 cut(s)	429, 667
EcoT38I	GRGCYC	2 cut(s)	689, 978
ErhI	CCWWGG	2 cut(s)	429, 667
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	3 cut(s)	679, 764, 899
FatI	CATG	3 cut(s)	675, 760, 895
Fnu4HI	GCNGC	6 cut(s)	160, 199, 202, 214, 217, 1024
FokI	GGATG	3 cut(s)	364, 866, 886
FriOI	GRGCYC	2 cut(s)	689, 978
Fsp4HI	GCNGC	6 cut(s)	160, 199, 202, 214, 217, 1024
FspBI	CTAG	1 cut(s)	1001
GlaI	GCGC	3 cut(s)	30, 32, 163
GluI	GCNGC	6 cut(s)	160, 199, 202, 214, 217, 1024
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	372, 613, 687
HapII	CCGG	2 cut(s)	99, 306
HhaI	GCGC	3 cut(s)	31, 33, 164
Hin1II	CATG	3 cut(s)	679, 764, 899
Hin6I	GCGC	3 cut(s)	29, 31, 162
HinP1I	GCGC	3 cut(s)	29, 31, 162
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	4 cut(s)	93, 114, 298, 1046
HpaI	GTTAAC	1 cut(s)	892
HpaII	CCGG	2 cut(s)	99, 306
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	3 cut(s)	892, 930, 932
Hpy188I	TCNGA	9 cut(s)	53, 92, 113, 314, 361, 660, 963, 1038, 1051
Hpy188III	TCNNGA	2 cut(s)	64, 986
Hpy8I	GTNNAC	3 cut(s)	892, 930, 932
Hpy99I	CGWCG	3 cut(s)	74, 113, 1042
HpyAV	CCTTC	3 cut(s)	15, 169, 383
HpyCH4III	ACNGT	6 cut(s)	61, 230, 333, 515, 830, 1042
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	6 cut(s)	365, 560, 675, 803, 881, 981
HpyF10VI	GCNNNNNNNGC	6 cut(s)	156, 210, 378, 446, 455, 788
HpyF3I	CTNAG	4 cut(s)	15, 50, 657, 818
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	3 cut(s)	679, 764, 899
HspAI	GCGC	3 cut(s)	29, 31, 162
KpnI	GGTACC	1 cut(s)	210
KspAI	GTTAAC	1 cut(s)	892
Kzo9I	GATC	5 cut(s)	66, 153, 167, 314, 616
LmnI	GCTCC	1 cut(s)	525
Lsp1109I	GCAGC	4 cut(s)	171, 225, 228, 1010
LweI	GCATC	4 cut(s)	342, 352, 559, 864
MaeI	CTAG	1 cut(s)	1001
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	1 cut(s)	856
MalI	GATC	5 cut(s)	68, 155, 169, 316, 618
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	5 cut(s)	66, 153, 167, 314, 616
MboII	GAAGA	6 cut(s)	13, 355, 398, 515, 535, 685
MfeI	CAATTG	1 cut(s)	861
MhlI	GDGCHC	4 cut(s)	689, 920, 971, 978
MluCI	AATT	3 cut(s)	473, 861, 995
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	2 cut(s)	91, 226
MnlI	CCTC	8 cut(s)	48, 52, 92, 264, 333, 457, 499, 844
MseI	TTAA	4 cut(s)	585, 608, 711, 891
MslI	CAYNNNNRTG	2 cut(s)	765, 925
MspA1I	CMGCKG	1 cut(s)	1023
MspCI	CTTAAG	2 cut(s)	607, 710
MspI	CCGG	2 cut(s)	99, 306
MspR9I	CCNGG	1 cut(s)	307
MunI	CAATTG	1 cut(s)	861
MvnI	CGCG	2 cut(s)	29, 31
MwoI	GCNNNNNNNGC	6 cut(s)	156, 210, 378, 446, 455, 788
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	5 cut(s)	66, 153, 167, 314, 616
NlaIII	CATG	3 cut(s)	679, 764, 899
NlaIV	GGNNCC	4 cut(s)	208, 311, 687, 688
NmuCI	GTSAC	1 cut(s)	856
NspV	TTCGAA	1 cut(s)	835
OliI	CACNNNNGTG	1 cut(s)	925
PauI	GCGCGC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	3 cut(s)	114, 298, 1046
PflMI	CCANNNNNTGG	1 cut(s)	1015
PkrI	GCNGC	6 cut(s)	161, 200, 203, 215, 218, 1025
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp1406I	AACGTT	1 cut(s)	533
PspN4I	GGNNCC	4 cut(s)	208, 311, 687, 688
PspOMI	GGGCCC	1 cut(s)	685
PspPI	GGNCC	4 cut(s)	370, 685, 686, 770
PteI	GCGCGC	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	1023
RsaI	GTAC	5 cut(s)	143, 208, 512, 752, 931
RsaNI	GTAC	5 cut(s)	142, 207, 511, 751, 930
RseI	CAYNNNNRTG	2 cut(s)	765, 925
SaqAI	TTAA	4 cut(s)	585, 608, 711, 891
SatI	GCNGC	6 cut(s)	160, 199, 202, 214, 217, 1024
Sau3AI	GATC	5 cut(s)	66, 153, 167, 314, 616
Sau96I	GGNCC	4 cut(s)	370, 685, 686, 770
ScaI	AGTACT	1 cut(s)	752
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	4 cut(s)	689, 920, 971, 978
SfaNI	GCATC	4 cut(s)	342, 352, 559, 864
SfuI	TTCGAA	1 cut(s)	835
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	2 cut(s)	765, 925
SmlI	CTYRAG	3 cut(s)	337, 607, 710
SmoI	CTYRAG	3 cut(s)	337, 607, 710
Sse9I	AATT	3 cut(s)	473, 861, 995
SsiI	CCGC	5 cut(s)	45, 198, 201, 204, 449
SspMI	CTAG	1 cut(s)	1001
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	429, 667
TaaI	ACNGT	6 cut(s)	61, 230, 333, 515, 830, 1042
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	1 cut(s)	835
TasI	AATT	3 cut(s)	473, 861, 995
TatI	WGTACW	4 cut(s)	141, 510, 750, 929
TauI	GCSGC	2 cut(s)	201, 204
TfiI	GAWTC	3 cut(s)	114, 298, 1046
Tru1I	TTAA	4 cut(s)	585, 608, 711, 891
Tru9I	TTAA	4 cut(s)	585, 608, 711, 891
TscAI	CASTG	3 cut(s)	372, 400, 633
TseFI	GTSAC	1 cut(s)	856
TseI	GCWGC	4 cut(s)	159, 213, 216, 1023
Tsp45I	GTSAC	1 cut(s)	856
TspDTI	ATGAA	3 cut(s)	94, 692, 899
TspRI	CASTG	3 cut(s)	372, 400, 633
Van91I	CCANNNNNTGG	1 cut(s)	1015
Vha464I	CTTAAG	2 cut(s)	607, 710
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	711
XspI	CTAG	1 cut(s)	1001
ZrmI	AGTACT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.