Rroxscaffold_1G00048990

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009248
Physical Location & Seq
Forward (+)
69115943 .. 69119657
3715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048990.1

Sequence Viewer

Length: 780 bp
ATGGGATTCGTCGGCATTCAGACCGGGTTCGGATCCGTCGGCCGGAGAGAGTCCCTCCGGAAGACTTGGATGCCGTCCGATGCCCAGGGCCTTCAACGATTGGAAGAAGCCACTGGTTTGGCTTTTAGGTTCATCATTGGTAAAAGCAAGGACCAAGCAAAGATGTTGGAGCTGGGAAAGGAAGTGGCGAAATACGACGATTTCTTGCTGTTGGATATTGAAGAGGAGTACAGTAAGCTCCCCTACAAAACATTGGCTTTCTTCAAAGCTGCCTATGCGCTTTTTGATTCCGACTTCTATGTTAAAGCTGATGATGACATTTACTTGAGGCCAGATCGCCTTTCGACGCTCTTGGCAAAAGAGCGCTCTCACTCTCAGACTTACCTTGGATGCATGAAAAAGGGCCCAGTCTTCACCGACCCAAAGCTTAAATGGTTTGAGCCACTAGCGTATTTGCTAGGGAGTGAATACTTTCTCCATGCCTATGGTCCAATCTATGCTCTTTCTGCCGATGTTGTTGCAAGTTTGGTTGCTCTTAGGAATAACAGTTTCCGGATGTTTAGCAATGAGGATGTCACAATTGGTGCATGGATGCTTGCAATGAACGTCAACCATGAGAACAATCAAGCACTATGCTCACCAGAATGTACATCATCATCTATTGCTGTGTGGGATATTCCTAAGTGCTCAGGGCTCTGCAATCCAGAACAGAAACTGTTAGAACTACATCAAAAGGACAGCTGTACAAAAAGTCCAACGATGGAATCTGATGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

259

Amino Acids

29.21

Weight (kDa)

5.25

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 15 - 208 4.2e-49 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 57, 552
AclWI GGATC 2 cut(s) 27, 40
AcoI YGGCCR 1 cut(s) 40
AfaI GTAC 3 cut(s) 230, 649, 745
AfeI AGCGCT 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 3 cut(s) 95, 221, 265
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 6 cut(s) 172, 238, 269, 308, 427, 741
AluI AGCT 6 cut(s) 172, 238, 269, 308, 427, 741
Alw21I GWGCWC 1 cut(s) 689
AlwI GGATC 2 cut(s) 27, 40
AlwNI CAGNNNCTG 1 cut(s) 715
Aor13HI TCCGGA 2 cut(s) 57, 552
Aor51HI AGCGCT 1 cut(s) 365
AoxI GGCC 4 cut(s) 40, 88, 329, 403
ApaI GGGCCC 1 cut(s) 407
ApeKI GCWGC 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 2 cut(s) 280, 366
AspS9I GGNCC 5 cut(s) 88, 151, 403, 404, 488
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 2 cut(s) 406, 630
AvaII GGWCC 2 cut(s) 151, 488
BaeGI GKGCMC 1 cut(s) 407
BamHI GGATCC 1 cut(s) 32
BanII GRGCYC 2 cut(s) 407, 696
BbsI GAAGAC 2 cut(s) 68, 403
Bbv12I GWGCWC 1 cut(s) 689
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 754
BceAI ACGGC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BciT130I CCWGG 1 cut(s) 86
BcnI CCSGG 1 cut(s) 25
BfaI CTAG 2 cut(s) 446, 458
BfoI RGCGCY 1 cut(s) 367
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 25, 86
Bme18I GGWCC 2 cut(s) 151, 488
BmgT120I GGNCC 5 cut(s) 88, 151, 403, 404, 488
BmiI GGNNCC 2 cut(s) 34, 405
BmrFI CCNGG 2 cut(s) 25, 86
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 4 cut(s) 60, 70, 380, 582
BmuI ACTGGG 1 cut(s) 401
BpiI GAAGAC 2 cut(s) 68, 403
BplI GAGNNNNNCTC 2 cut(s) 39, 71
Bpu10I CCTNAGC 1 cut(s) 688
BpuEI CTTGAG 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 84, 85, 385
BsaWI WCCGGW 2 cut(s) 57, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 118, 407
Bse3DI GCAATG 2 cut(s) 571, 606
BseAI TCCGGA 2 cut(s) 57, 552
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 3 cut(s) 84, 85, 385
BseGI GGATG 5 cut(s) 75, 395, 561, 577, 597
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 2 cut(s) 571, 606
BseMII CTCAG 2 cut(s) 389, 702
BseNI ACTGG 2 cut(s) 118, 407
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 407
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 4 cut(s) 42, 90, 331, 405
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 689
BsiSI CCGG 4 cut(s) 24, 43, 58, 553
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 4 cut(s) 42, 90, 331, 405
Bsp120I GGGCCC 1 cut(s) 403
Bsp1286I GDGCHC 3 cut(s) 407, 689, 696
Bsp13I TCCGGA 2 cut(s) 57, 552
Bsp1407I TGTACA 2 cut(s) 647, 743
Bsp143I GATC 2 cut(s) 32, 334
BspANI GGCC 4 cut(s) 42, 90, 331, 405
BspCNI CTCAG 2 cut(s) 388, 701
BspEI TCCGGA 2 cut(s) 57, 552
BspLI GGNNCC 2 cut(s) 34, 405
BspPI GGATC 2 cut(s) 27, 40
BsrDI GCAATG 2 cut(s) 571, 606
BsrGI TGTACA 2 cut(s) 647, 743
BsrI ACTGG 2 cut(s) 118, 407
BssECI CCNNGG 3 cut(s) 84, 85, 385
BssMI GATC 2 cut(s) 32, 334
BssT1I CCWWGG 1 cut(s) 385
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 3 cut(s) 233, 548, 717
Bst6I CTCTTC 1 cut(s) 216
BstAUI TGTACA 2 cut(s) 647, 743
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 4 cut(s) 375, 536, 681, 688
BstF5I GGATG 5 cut(s) 75, 395, 561, 577, 597
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 2 cut(s) 280, 366
BstKTI GATC 2 cut(s) 35, 337
BstMBI GATC 2 cut(s) 32, 334
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 275, 506
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 23, 84
BstSLI GKGCMC 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 2 cut(s) 68, 403
BstX2I RGATCY 1 cut(s) 32
BstXI CCANNNNNNTGG 2 cut(s) 118, 485
BstYI RGATCY 1 cut(s) 32
BstZI CGGCCG 1 cut(s) 40
BsuRI GGCC 4 cut(s) 42, 90, 331, 405
BtsCI GGATG 5 cut(s) 75, 395, 561, 577, 597
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 597
CaiI CAGNNNCTG 1 cut(s) 715
CfoI GCGC 2 cut(s) 280, 366
Cfr13I GGNCC 5 cut(s) 88, 151, 403, 404, 488
CseI GACGC 1 cut(s) 355
Csp6I GTAC 3 cut(s) 229, 648, 744
CviAII CATG 4 cut(s) 394, 479, 588, 614
CviQI GTAC 3 cut(s) 229, 648, 744
DdeI CTNAG 4 cut(s) 375, 536, 681, 688
DpnI GATC 2 cut(s) 34, 336
DpnII GATC 2 cut(s) 32, 334
EaeI YGGCCR 1 cut(s) 40
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EclXI CGGCCG 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 2 cut(s) 407, 696
Eco47I GGWCC 2 cut(s) 151, 488
Eco47III AGCGCT 1 cut(s) 365
Eco52I CGGCCG 1 cut(s) 40
EcoO109I RGGNCCY 2 cut(s) 88, 403
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 385
EcoT22I ATGCAT 1 cut(s) 395
EcoT38I GRGCYC 2 cut(s) 407, 696
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 4 cut(s) 397, 482, 591, 617
FaiI YATR 9 cut(s) 276, 300, 395, 480, 486, 498, 589, 615, 634
FaqI GGGAC 1 cut(s) 37
FatI CATG 4 cut(s) 393, 478, 587, 613
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 5 cut(s) 82, 402, 568, 584, 604
FriOI GRGCYC 2 cut(s) 407, 696
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 2 cut(s) 446, 458
GlaI GCGC 2 cut(s) 279, 365
GluI GCNGC 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 367
HaeIII GGCC 4 cut(s) 42, 90, 331, 405
HapII CCGG 4 cut(s) 24, 43, 58, 553
HgaI GACGC 1 cut(s) 355
HhaI GCGC 2 cut(s) 280, 366
Hin1II CATG 4 cut(s) 397, 482, 591, 617
Hin6I GCGC 2 cut(s) 278, 364
HinP1I GCGC 2 cut(s) 278, 364
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 4 cut(s) 6, 50, 287, 764
HpaII CCGG 4 cut(s) 24, 43, 58, 553
HphI GGTGA 2 cut(s) 406, 630
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 6 cut(s) 21, 32, 79, 292, 378, 769
Hpy188III TCNNGA 3 cut(s) 58, 553, 704
Hpy8I GTNNAC 1 cut(s) 610
Hpy99I CGWCG 4 cut(s) 14, 41, 200, 349
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 3 cut(s) 233, 548, 717
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 5 cut(s) 393, 521, 587, 599, 699
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 506
HpyF3I CTNAG 4 cut(s) 375, 536, 681, 688
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 4 cut(s) 397, 482, 591, 617
HspAI GCGC 2 cut(s) 278, 364
Kpn2I TCCGGA 2 cut(s) 57, 552
Kzo9I GATC 2 cut(s) 32, 334
LmnI GCTCC 2 cut(s) 169, 243
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 4 cut(s) 60, 70, 380, 582
MaeI CTAG 2 cut(s) 446, 458
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 1 cut(s) 574
MalI GATC 2 cut(s) 34, 336
MboI GATC 2 cut(s) 32, 334
MboII GAAGA 5 cut(s) 73, 116, 233, 253, 403
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 1 cut(s) 32
MhlI GDGCHC 3 cut(s) 407, 689, 696
MluCI AATT 1 cut(s) 579
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 4 cut(s) 147, 192, 315, 779
MnlI CCTC 4 cut(s) 65, 217, 321, 562
Mph1103I ATGCAT 1 cut(s) 395
MroI TCCGGA 2 cut(s) 57, 552
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 2 cut(s) 303, 429
MslI CAYNNNNRTG 2 cut(s) 483, 643
MspA1I CMGCKG 1 cut(s) 741
MspI CCGG 4 cut(s) 24, 43, 58, 553
MspR9I CCNGG 2 cut(s) 25, 86
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 275, 506
NciI CCSGG 1 cut(s) 25
NdeII GATC 2 cut(s) 32, 334
NlaIII CATG 4 cut(s) 397, 482, 591, 617
NlaIV GGNNCC 2 cut(s) 34, 405
NmuCI GTSAC 1 cut(s) 574
NsiI ATGCAT 1 cut(s) 395
PasI CCCWGGG 1 cut(s) 85
PctI GAATGC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 3 cut(s) 6, 287, 764
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 34, 405
PspOMI GGGCCC 1 cut(s) 403
PspPI GGNCC 5 cut(s) 88, 151, 403, 404, 488
PstNI CAGNNNCTG 1 cut(s) 715
PsuI RGATCY 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 741
RsaI GTAC 3 cut(s) 230, 649, 745
RsaNI GTAC 3 cut(s) 229, 648, 744
RseI CAYNNNNRTG 2 cut(s) 483, 643
SaqAI TTAA 2 cut(s) 303, 429
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 2 cut(s) 32, 334
Sau96I GGNCC 5 cut(s) 88, 151, 403, 404, 488
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 25, 86
SduI GDGCHC 3 cut(s) 407, 689, 696
SetI ASST 9 cut(s) 131, 174, 240, 271, 310, 387, 429, 609, 743
SfaNI GCATC 4 cut(s) 60, 70, 380, 582
SinI GGWCC 2 cut(s) 151, 488
SmiMI CAYNNNNRTG 2 cut(s) 483, 643
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 1 cut(s) 579
SspMI CTAG 2 cut(s) 446, 458
StyD4I CCNGG 2 cut(s) 23, 84
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 3 cut(s) 233, 548, 717
TaiI ACGT 1 cut(s) 609
TaqI TCGA 1 cut(s) 344
TasI AATT 1 cut(s) 579
TatI WGTACW 3 cut(s) 228, 647, 743
TfiI GAWTC 3 cut(s) 6, 287, 764
Tru1I TTAA 2 cut(s) 303, 429
Tru9I TTAA 2 cut(s) 303, 429
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 3 cut(s) 121, 410, 617
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 2 cut(s) 151, 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 429
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 2 cut(s) 446, 458
Zsp2I ATGCAT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.