MD11G1260700.v1.1

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009248
Physical Location & Seq
Forward (+)
37477829 .. 37482370
4542 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1260700.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGCCTTCATCCCCCAAGTTCTTCCACGCGCGCCAACCTCCCTCCACTCTCAGACCAACAGTCCTGATCGTCGCCTTCTCCCTCGTCTTCGGACTCTCGGGGTTCATCTTCGGAATCGTCTCGATTCTCCACCCGAGCCAGTACAAGTGCCTGGCCGGCAACGCCAGATCGGTGAAGGTGGTTTGGGAGAAAAGTGGAGGCGGCGGCGGTGGCGGCAGCAGCAGCACTCAAAATGGTCTCGTTTCGGGGGTTGGAGATGGAAATGACGAGAATAAGAGGCATAAAGTCATGGGCTTTGTGGGGATACAGACCGGGTTCCGATCCACTGGTCGTAGACAGTCCTTGAGGAAGACTTGGATGCCGTCCGATACACAGGGCCTTCAACGCTTGGAAGAAGCCACTGGTTTGGCTTTCAGGTTTGTGATTGGTAAAACCAAGGAAAAAGCAAAGATGGCAGAACTCTCTAAAGAAGTGGCCAAATATGATGATTTCGTGCTATTGGATATCGAAGAGGAGTACAGCAAGCTCCCCTACAAAACGTTGGCTTTCTTCAAAGCTGCCTATGAACTTTATGATGCTGACTTCTATGTTAAAGCTGATGACGACATATACTTAAGGCCAGATCGCCTTTCACTGCTTTTGGCAAAAGAGCGTTCTCACTCTCAGACTTACCTTGGGTGCATGAAAAAGGGCCCAGTCTTCACTGACTCGAATCTTAAGTGGTATGAGCCACTTTCCTATTTGCTTGGAAGCGAGTACTTTCTCCATGCCTATGGTCCAATATATGCTCTTTCTGCTGATGTTGTTGCAAGTTTGGTTGCTCTTAGAAACAACAGTTTTCGAATGTTTAGCAATGAGGATGTCACGATTGGTGCATGGATGCTTGCAATGAATGTCAACCAAGAGAACAATAAAGCATTGTGCTCACAGCATTGTACATCATCATCTATTGCTGTGTGGGATATTCCGAAGTGCTCTGGGCTGTGCAACCCAGAAACCAAATTGCTAGAACTCCACCAGCAGGACAGCTGCTCAAAAACTCCGACAGTGGAATCTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

355

Amino Acids

39.26

Weight (kDa)

8.05

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 111 - 304 4.8e-50 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 334
AccII CGCG 2 cut(s) 29, 31
AciI CCGC 4 cut(s) 201, 204, 207, 213
AclI AACGTT 1 cut(s) 539
AclWI GGATC 1 cut(s) 315
AcoI YGGCCR 2 cut(s) 153, 474
AfaI GTAC 4 cut(s) 143, 518, 758, 937
AfiI CCNNNNNNNGG 1 cut(s) 1021
AflII CTTAAG 2 cut(s) 613, 716
AgsI TTSAA 2 cut(s) 383, 553
AhdI GACNNNNNGTC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 4 cut(s) 526, 557, 596, 1029
AluI AGCT 4 cut(s) 526, 557, 596, 1029
Alw21I GWGCWC 2 cut(s) 926, 977
Alw26I GTCTC 2 cut(s) 124, 242
AlwI GGATC 1 cut(s) 315
Ama87I CYCGRG 2 cut(s) 97, 133
AoxI GGCC 5 cut(s) 153, 376, 474, 617, 691
ApaI GGGCCC 1 cut(s) 695
ApeKI GCWGC 5 cut(s) 216, 219, 222, 557, 1029
AspLEI GCGC 2 cut(s) 31, 33
AspS9I GGNCC 4 cut(s) 376, 691, 692, 776
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 184
AsuII TTCGAA 1 cut(s) 841
AvaI CYCGRG 2 cut(s) 97, 133
AvaII GGWCC 1 cut(s) 776
BaeGI GKGCMC 1 cut(s) 695
BalI TGGCCA 1 cut(s) 476
BanII GRGCYC 1 cut(s) 695
BbsI GAAGAC 3 cut(s) 79, 356, 691
Bbv12I GWGCWC 2 cut(s) 926, 977
BbvI GCAGC 5 cut(s) 228, 231, 234, 544, 1016
BccI CCATC 2 cut(s) 251, 445
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 152
BciVI GTATCC 1 cut(s) 297
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 124, 242
BfaI CTAG 1 cut(s) 1007
BfrI CTTAAG 2 cut(s) 613, 716
BfuI GTATCC 1 cut(s) 297
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 8 cut(s) 202, 205, 214, 217, 220, 223, 558, 1030
BlsI GCNGC 8 cut(s) 203, 206, 215, 218, 221, 224, 559, 1031
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 2 cut(s) 152, 313
Bme18I GGWCC 1 cut(s) 776
BmeRI GACNNNNNGTC 1 cut(s) 59
BmeT110I CYCGRG 2 cut(s) 97, 133
BmgT120I GGNCC 4 cut(s) 376, 691, 692, 776
BmiI GGNNCC 2 cut(s) 317, 693
BmrFI CCNGG 2 cut(s) 152, 313
BmrI ACTGGG 1 cut(s) 689
BmsI GCATC 3 cut(s) 348, 565, 870
BmuI ACTGGG 1 cut(s) 689
BpiI GAAGAC 3 cut(s) 79, 356, 691
Bpu14I TTCGAA 1 cut(s) 841
BpuEI CTTGAG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 435, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 1021
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 4 cut(s) 139, 331, 406, 695
Bse3DI GCAATG 2 cut(s) 859, 894
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 435, 673
BseGI GGATG 4 cut(s) 8, 363, 865, 885
BseLI CCNNNNNNNGG 1 cut(s) 1021
BseMI GCAATG 2 cut(s) 859, 894
BseMII CTCAG 2 cut(s) 64, 677
BseNI ACTGG 4 cut(s) 139, 331, 406, 695
BsePI GCGCGC 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 695
BseXI GCAGC 5 cut(s) 228, 231, 234, 544, 1016
Bsh1236I CGCG 2 cut(s) 29, 31
BshFI GGCC 5 cut(s) 155, 378, 476, 619, 693
BsiHKAI GWGCWC 2 cut(s) 926, 977
BsiHKCI CYCGRG 2 cut(s) 97, 133
BsiSI CCGG 2 cut(s) 156, 312
BslI CCNNNNNNNGG 1 cut(s) 1021
BsmAI GTCTC 2 cut(s) 124, 242
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 5 cut(s) 155, 378, 476, 619, 693
Bso31I GGTCTC 1 cut(s) 242
BsoBI CYCGRG 2 cut(s) 97, 133
Bsp119I TTCGAA 1 cut(s) 841
Bsp120I GGGCCC 1 cut(s) 691
Bsp1286I GDGCHC 3 cut(s) 695, 926, 977
Bsp1407I TGTACA 1 cut(s) 935
Bsp143I GATC 4 cut(s) 66, 167, 320, 622
BspACI CCGC 4 cut(s) 201, 204, 207, 213
BspANI GGCC 5 cut(s) 155, 378, 476, 619, 693
BspCNI CTCAG 2 cut(s) 63, 676
BspFNI CGCG 2 cut(s) 29, 31
BspLI GGNNCC 2 cut(s) 317, 693
BspPI GGATC 1 cut(s) 315
BspT104I TTCGAA 1 cut(s) 841
BspTI CTTAAG 2 cut(s) 613, 716
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 2 cut(s) 859, 894
BsrFI RCCGGY 1 cut(s) 155
BsrGI TGTACA 1 cut(s) 935
BsrI ACTGG 4 cut(s) 139, 331, 406, 695
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 435, 673
BssHII GCGCGC 1 cut(s) 29
BssMI GATC 4 cut(s) 66, 167, 320, 622
BssT1I CCWWGG 2 cut(s) 435, 673
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 4 cut(s) 61, 339, 836, 1048
Bst6I CTCTTC 1 cut(s) 504
BstAFI CTTAAG 2 cut(s) 613, 716
BstAUI TGTACA 1 cut(s) 935
BstBI TTCGAA 1 cut(s) 841
BstC8I GCNNGC 4 cut(s) 31, 157, 524, 885
BstDEI CTNAG 3 cut(s) 50, 663, 824
BstF5I GGATG 4 cut(s) 8, 363, 865, 885
BstFNI CGCG 2 cut(s) 29, 31
BstHHI GCGC 2 cut(s) 31, 33
BstKTI GATC 4 cut(s) 69, 170, 323, 625
BstMAI GTCTC 2 cut(s) 124, 242
BstMBI GATC 4 cut(s) 66, 167, 320, 622
BstMWI GCNNNNNNNGC 9 cut(s) 156, 161, 210, 213, 219, 222, 384, 452, 794
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 150, 311
BstSLI GKGCMC 1 cut(s) 695
BstUI CGCG 2 cut(s) 29, 31
BstV1I GCAGC 5 cut(s) 228, 231, 234, 544, 1016
BstV2I GAAGAC 3 cut(s) 79, 356, 691
BstXI CCANNNNNNTGG 2 cut(s) 406, 773
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 5 cut(s) 155, 378, 476, 619, 693
BtsCI GGATG 4 cut(s) 8, 363, 865, 885
BtsI GCAGTG 1 cut(s) 632
BtsIMutI CAGTG 5 cut(s) 324, 399, 632, 702, 1053
Cac8I GCNNGC 4 cut(s) 31, 157, 524, 885
CfoI GCGC 2 cut(s) 31, 33
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 4 cut(s) 376, 691, 692, 776
Csp6I GTAC 4 cut(s) 142, 517, 757, 936
CviAII CATG 4 cut(s) 289, 682, 767, 876
CviQI GTAC 4 cut(s) 142, 517, 757, 936
DdeI CTNAG 3 cut(s) 50, 663, 824
DpnI GATC 4 cut(s) 68, 169, 322, 624
DpnII GATC 4 cut(s) 66, 167, 320, 622
DriI GACNNNNNGTC 1 cut(s) 59
EaeI YGGCCR 2 cut(s) 153, 474
Eam1104I CTCTTC 1 cut(s) 504
Eam1105I GACNNNNNGTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 2 cut(s) 435, 673
Eco24I GRGCYC 1 cut(s) 695
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 1 cut(s) 776
Eco88I CYCGRG 2 cut(s) 97, 133
EcoO109I RGGNCCY 2 cut(s) 376, 691
EcoRII CCWGG 1 cut(s) 150
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 2 cut(s) 435, 673
EcoT38I GRGCYC 1 cut(s) 695
ErhI CCWWGG 2 cut(s) 435, 673
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 4 cut(s) 292, 685, 770, 879
FatI CATG 4 cut(s) 288, 681, 766, 875
FblI GTMKAC 1 cut(s) 334
Fnu4HI GCNGC 8 cut(s) 202, 205, 214, 217, 220, 223, 558, 1030
FokI GGATG 3 cut(s) 370, 872, 892
FriOI GRGCYC 1 cut(s) 695
Fsp4HI GCNGC 8 cut(s) 202, 205, 214, 217, 220, 223, 558, 1030
FspBI CTAG 1 cut(s) 1007
GlaI GCGC 2 cut(s) 30, 32
GluI GCNGC 8 cut(s) 202, 205, 214, 217, 220, 223, 558, 1030
HaeIII GGCC 5 cut(s) 155, 378, 476, 619, 693
HapII CCGG 2 cut(s) 156, 312
HhaI GCGC 2 cut(s) 31, 33
Hin1II CATG 4 cut(s) 292, 685, 770, 879
Hin6I GCGC 2 cut(s) 29, 31
HinP1I GCGC 2 cut(s) 29, 31
HincII GTYRAC 1 cut(s) 898
HindII GTYRAC 1 cut(s) 898
HinfI GANTC 6 cut(s) 93, 114, 124, 707, 712, 1052
HpaII CCGG 2 cut(s) 156, 312
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 2 cut(s) 335, 898
Hpy188I TCNGA 9 cut(s) 53, 92, 113, 320, 367, 666, 969, 1044, 1057
Hpy188III TCNNGA 3 cut(s) 64, 121, 865
Hpy8I GTNNAC 2 cut(s) 335, 898
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 15, 85, 169, 389
HpyCH4III ACNGT 4 cut(s) 61, 339, 836, 1048
HpyCH4IV ACGT 1 cut(s) 539
HpyCH4V TGCA 5 cut(s) 681, 809, 875, 887, 987
HpyF10VI GCNNNNNNNGC 9 cut(s) 156, 161, 210, 213, 219, 222, 384, 452, 794
HpyF3I CTNAG 3 cut(s) 50, 663, 824
HpySE526I ACGT 1 cut(s) 539
Hsp92II CATG 4 cut(s) 292, 685, 770, 879
HspAI GCGC 2 cut(s) 29, 31
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 66, 167, 320, 622
LmnI GCTCC 1 cut(s) 531
Lsp1109I GCAGC 5 cut(s) 228, 231, 234, 544, 1016
LweI GCATC 3 cut(s) 348, 565, 870
MaeI CTAG 1 cut(s) 1007
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 1 cut(s) 862
MalI GATC 4 cut(s) 68, 169, 322, 624
MboI GATC 4 cut(s) 66, 167, 320, 622
MboII GAAGA 8 cut(s) 13, 79, 100, 361, 404, 521, 541, 691
MhlI GDGCHC 3 cut(s) 695, 926, 977
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 1 cut(s) 1001
MluNI TGGCCA 1 cut(s) 476
MlyI GAGTC 2 cut(s) 87, 701
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 8 cut(s) 48, 52, 92, 191, 270, 339, 505, 850
Mox20I TGGCCA 1 cut(s) 476
MroNI GCCGGC 1 cut(s) 155
MscI TGGCCA 1 cut(s) 476
MseI TTAA 3 cut(s) 591, 614, 717
MslI CAYNNNNRTG 1 cut(s) 771
Msp20I TGGCCA 1 cut(s) 476
MspA1I CMGCKG 1 cut(s) 1029
MspCI CTTAAG 2 cut(s) 613, 716
MspI CCGG 2 cut(s) 156, 312
MspR9I CCNGG 2 cut(s) 152, 313
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 2 cut(s) 29, 31
MwoI GCNNNNNNNGC 9 cut(s) 156, 161, 210, 213, 219, 222, 384, 452, 794
NaeI GCCGGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 313
NdeII GATC 4 cut(s) 66, 167, 320, 622
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 4 cut(s) 292, 685, 770, 879
NlaIV GGNNCC 2 cut(s) 317, 693
NmuCI GTSAC 1 cut(s) 862
NspV TTCGAA 1 cut(s) 841
PauI GCGCGC 1 cut(s) 29
PdiI GCCGGC 1 cut(s) 157
PfeI GAWTC 4 cut(s) 114, 124, 712, 1052
PkrI GCNGC 8 cut(s) 203, 206, 215, 218, 221, 224, 559, 1031
PleI GAGTC 2 cut(s) 87, 701
PpsI GAGTC 2 cut(s) 87, 701
Psp1406I AACGTT 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 317, 693
PspOMI GGGCCC 1 cut(s) 691
PspPI GGNCC 4 cut(s) 376, 691, 692, 776
PteI GCGCGC 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 1029
RsaI GTAC 4 cut(s) 143, 518, 758, 937
RsaNI GTAC 4 cut(s) 142, 517, 757, 936
RseI CAYNNNNRTG 1 cut(s) 771
SaqAI TTAA 3 cut(s) 591, 614, 717
SatI GCNGC 8 cut(s) 202, 205, 214, 217, 220, 223, 558, 1030
Sau3AI GATC 4 cut(s) 66, 167, 320, 622
Sau96I GGNCC 4 cut(s) 376, 691, 692, 776
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 2 cut(s) 87, 701
ScrFI CCNGG 2 cut(s) 152, 313
SduI GDGCHC 3 cut(s) 695, 926, 977
SetI ASST 9 cut(s) 40, 180, 419, 528, 542, 559, 598, 675, 1031
SfaNI GCATC 3 cut(s) 348, 565, 870
SfuI TTCGAA 1 cut(s) 841
SinI GGWCC 1 cut(s) 776
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 3 cut(s) 343, 613, 716
SmoI CTYRAG 3 cut(s) 343, 613, 716
Sse9I AATT 1 cut(s) 1001
SsiI CCGC 4 cut(s) 201, 204, 207, 213
SspMI CTAG 1 cut(s) 1007
StyD4I CCNGG 2 cut(s) 150, 311
StyI CCWWGG 2 cut(s) 435, 673
TaaI ACNGT 4 cut(s) 61, 339, 836, 1048
TaiI ACGT 1 cut(s) 542
TaqI TCGA 4 cut(s) 122, 507, 710, 841
TasI AATT 1 cut(s) 1001
TatI WGTACW 4 cut(s) 141, 516, 756, 935
TauI GCSGC 3 cut(s) 204, 207, 216
TfiI GAWTC 4 cut(s) 114, 124, 712, 1052
Tru1I TTAA 3 cut(s) 591, 614, 717
Tru9I TTAA 3 cut(s) 591, 614, 717
TscAI CASTG 5 cut(s) 331, 406, 639, 709, 1053
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 5 cut(s) 216, 219, 222, 557, 1029
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 4 cut(s) 94, 579, 698, 905
TspRI CASTG 5 cut(s) 331, 406, 639, 709, 1053
Vha464I CTTAAG 2 cut(s) 613, 716
VpaK11BI GGWCC 1 cut(s) 776
XmiI GTMKAC 1 cut(s) 334
XspI CTAG 1 cut(s) 1007
ZrmI AGTACT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.