Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009248

Physical Location & Seq

Genomic Coordinates Reverse (-)

9726566 .. 9731553

Gene Structure 4988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G167600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCCTTCATCCCCCAAGTTCTTCCACGCACGCCAACCTCCTTCAGCTCTCAGACCAACCGTCTTGCTCATCGGGTTCTGCCTCCTGTTCGGCCTCTCCGGGTTCATCTTCGGACTCGTCTCGCTTCTCCACCCAAGCCGCCAATACAAGTGCCTGACGAGCAAGTCCAGATCGGTAAAGGTGATTTGGGAGACAGGTAGTAGTAGCAGCAGCAGCAGTCAAAACGGTCTCGTTTTGAATGTTGGAGATGGGAATGACAATAACAAGAGGAAGAAAGTGATGGGATTTGTGGGTATTCAAACTGGGTTCCGATCCACGGGTCGCAGACAATCTTTGAGGAAGACTTGGATGCCGTCCGATGCCCAGGGCCTTCAACGCGTGGAAGAAGCCACTGGGTTGGCTTTTAGGTTTGTGATTGGTAAAACCAAGGAAAAACAAAAGATGGCCGAACTTGCAAAGGAGGTGGCCGAATACGATGATTTCTTGCTATTGGATATTGAAGAGGAGTACAGTAAGCTCCCCTACAAAACGTTGGCTTTCTTCAAAGCTGCCTATGCACTTTTTGAAGCTGACTTCTATGTTAAAGCTGATGACGACATATACTTAAGGCCAGACCGCCTTTCACTGCTCTTGGCAAAAGAGCGTTCTCACTCTCAGACTTACCTTGGGTGCATGAAAAAGGGCCCAGTCTTCACTGACCCGAAACTTAAATGGTATGAGCCACTATCCTATTTGCTCGGGAGCGAATACTTTCTCCATGCTTATGGTCCATTATATGCTCTCTCTGCTGATGTTGTTGCAAGTTTGGTTGCTCTTAGGAACAACAGTTTCCGAATGTTTAGTAATGAGGATGTCACAATTGGTGCGTGGATGCTTGCTATGAATGTCAACCATGAGAACAATCAGGCATTGTGTTCACCACGGTGTACATCAACATCTATAGCTGTGTGGGATATTCCTAAGTGCTCAGGGCTCTGCAATCCAGAAACCAAATTGTTAGAACTCCACCAAAAGGACAGCTGCTCAAAAGGTCCGACACTGGAATCTGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Galactosyl_T

Protein Analysis

352

Amino Acids

39.33

Weight (kDa)

8.76

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53290 AT3G14960
fragaria_vesca	FvH4_3g18550
malus_domestica	MD03G1241400.v1.1 MD11G1260700.v1.1
prunus_persica	Prupe.4G167600_v2.0.a1 Prupe.4G167600_v2.0.a1 Prupe.4G167600_v2.0.a1 Prupe.4G167600_v2.0.a1
pyrus_communis	pycom03g18800 pycom11g23010
rosa_chinensis	RchiOBHm_Chr5g0031301
rosa_laevigata	RLG00000033299
rosa_multiflora	Rmu_sc0006236.1_g000010 Rmu_sc0007782.1_g000020
rosa_roxburghii	Rroxscaffold_1G00048990
rosa_rugosa	Rorug05G0123900
rosa_samantha	Rh5AG217200 Rh5BG216900 Rh5CG240500 Rh5DG222000
rosa_wichuraiana	Rw5G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AccII	CGCG	1 cut(s)	378
AciI	CCGC	2 cut(s)	139, 616
AclI	AACGTT	1 cut(s)	530
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	2 cut(s)	444, 465
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	2 cut(s)	509, 928
AfiI	CCNNNNNNNGG	2 cut(s)	316, 1012
AflII	CTTAAG	1 cut(s)	604
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	6 cut(s)	238, 299, 374, 500, 544, 566
AhdI	GACNNNNNGTC	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	363
AleI	CACNNNNGTG	1 cut(s)	922
AluBI	AGCT	7 cut(s)	47, 517, 548, 569, 587, 944, 1020
AluI	AGCT	7 cut(s)	47, 517, 548, 569, 587, 944, 1020
Alw21I	GWGCWC	1 cut(s)	968
Alw26I	GTCTC	3 cut(s)	124, 185, 233
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	6 cut(s)	91, 367, 444, 465, 608, 682
ApaI	GGGCCC	1 cut(s)	686
ApeKI	GCWGC	5 cut(s)	207, 210, 213, 548, 1020
Asp700I	GAANNNNTTC	1 cut(s)	750
AspS9I	GGNCC	5 cut(s)	367, 682, 683, 767, 1031
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	193, 909
AvaI	CYCGRG	1 cut(s)	737
AvaII	GGWCC	2 cut(s)	767, 1031
BaeGI	GKGCMC	1 cut(s)	686
BanII	GRGCYC	2 cut(s)	686, 975
BbsI	GAAGAC	2 cut(s)	347, 682
Bbv12I	GWGCWC	1 cut(s)	968
BbvI	GCAGC	5 cut(s)	219, 222, 225, 535, 1007
BccI	CCATC	3 cut(s)	242, 274, 436
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	3 cut(s)	124, 185, 233
BfmI	CTRYAG	1 cut(s)	939
BfrI	CTTAAG	1 cut(s)	604
BisI	GCNGC	6 cut(s)	139, 208, 211, 214, 549, 1021
BlsI	GCNGC	6 cut(s)	140, 209, 212, 215, 550, 1022
Bme1390I	CCNGG	2 cut(s)	100, 365
Bme18I	GGWCC	2 cut(s)	767, 1031
BmeRI	GACNNNNNGTC	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	737
BmgT120I	GGNCC	5 cut(s)	367, 682, 683, 767, 1031
BmiI	GGNNCC	2 cut(s)	308, 684
BmrFI	CCNGG	2 cut(s)	100, 365
BmrI	ACTGGG	3 cut(s)	312, 402, 680
BmsI	GCATC	3 cut(s)	339, 349, 861
BmuI	ACTGGG	3 cut(s)	312, 402, 680
BpiI	GAAGAC	2 cut(s)	347, 682
Bpu10I	CCTNAGC	1 cut(s)	967
BpuMI	CCSGG	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	6 cut(s)	315, 363, 364, 426, 664, 920
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 1012
Bse1I	ACTGG	4 cut(s)	307, 397, 686, 1044
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	6 cut(s)	315, 363, 364, 426, 664, 920
BseGI	GGATG	4 cut(s)	8, 354, 856, 876
BseLI	CCNNNNNNNGG	2 cut(s)	316, 1012
BseMII	CTCAG	3 cut(s)	64, 668, 981
BseNI	ACTGG	4 cut(s)	307, 397, 686, 1044
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	686
BseXI	GCAGC	5 cut(s)	219, 222, 225, 535, 1007
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	6 cut(s)	93, 369, 446, 467, 610, 684
BsiHKAI	GWGCWC	1 cut(s)	968
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	2 cut(s)	316, 1012
BsmAI	GTCTC	3 cut(s)	124, 185, 233
BsmBI	CGTCTC	1 cut(s)	124
BsnI	GGCC	6 cut(s)	93, 369, 446, 467, 610, 684
Bso31I	GGTCTC	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	737
Bsp120I	GGGCCC	1 cut(s)	682
Bsp1286I	GDGCHC	3 cut(s)	686, 968, 975
Bsp1407I	TGTACA	1 cut(s)	926
Bsp143I	GATC	2 cut(s)	170, 311
BspACI	CCGC	2 cut(s)	139, 616
BspANI	GGCC	6 cut(s)	93, 369, 446, 467, 610, 684
BspCNI	CTCAG	3 cut(s)	63, 667, 980
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	308, 684
BspPI	GGATC	1 cut(s)	306
BspTI	CTTAAG	1 cut(s)	604
BspTNI	GGTCTC	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	926
BsrI	ACTGG	4 cut(s)	307, 397, 686, 1044
BssECI	CCNNGG	6 cut(s)	315, 363, 364, 426, 664, 920
BssMI	GATC	2 cut(s)	170, 311
BssT1I	CCWWGG	2 cut(s)	426, 664
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	5 cut(s)	61, 227, 512, 827, 924
Bst6I	CTCTTC	1 cut(s)	495
BstAFI	CTTAAG	1 cut(s)	604
BstAUI	TGTACA	1 cut(s)	926
BstC8I	GCNNGC	2 cut(s)	31, 876
BstDEI	CTNAG	5 cut(s)	50, 654, 815, 960, 967
BstDSI	CCRYGG	2 cut(s)	315, 920
BstF5I	GGATG	4 cut(s)	8, 354, 856, 876
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	2 cut(s)	173, 314
BstMAI	GTCTC	3 cut(s)	124, 185, 233
BstMBI	GATC	2 cut(s)	170, 311
BstMWI	GCNNNNNNNGC	6 cut(s)	159, 213, 375, 452, 554, 785
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	98, 363
BstSFI	CTRYAG	1 cut(s)	939
BstSLI	GKGCMC	1 cut(s)	686
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	5 cut(s)	219, 222, 225, 535, 1007
BstV2I	GAAGAC	2 cut(s)	347, 682
BstXI	CCANNNNNNTGG	2 cut(s)	397, 764
BsuRI	GGCC	6 cut(s)	93, 369, 446, 467, 610, 684
BtgI	CCRYGG	2 cut(s)	315, 920
BtsCI	GGATG	4 cut(s)	8, 354, 856, 876
BtsI	GCAGTG	1 cut(s)	623
BtsIMutI	CAGTG	4 cut(s)	390, 623, 693, 1037
Cac8I	GCNNGC	2 cut(s)	31, 876
Cfr13I	GGNCC	5 cut(s)	367, 682, 683, 767, 1031
Csp6I	GTAC	2 cut(s)	508, 927
CspCI	CAANNNNNGTGG	2 cut(s)	444, 479
CviAII	CATG	3 cut(s)	673, 758, 893
CviQI	GTAC	2 cut(s)	508, 927
DdeI	CTNAG	5 cut(s)	50, 654, 815, 960, 967
DpnI	GATC	2 cut(s)	172, 313
DpnII	GATC	2 cut(s)	170, 311
DrdI	GACNNNNNNGTC	1 cut(s)	163
DriI	GACNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	163
EaeI	YGGCCR	2 cut(s)	444, 465
Eam1104I	CTCTTC	1 cut(s)	495
Eam1105I	GACNNNNNGTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	495
Eco130I	CCWWGG	2 cut(s)	426, 664
Eco24I	GRGCYC	2 cut(s)	686, 975
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	767, 1031
Eco57I	CTGAAG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	737
EcoO109I	RGGNCCY	2 cut(s)	367, 682
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	2 cut(s)	426, 664
EcoT38I	GRGCYC	2 cut(s)	686, 975
ErhI	CCWWGG	2 cut(s)	426, 664
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	3 cut(s)	676, 761, 896
FatI	CATG	3 cut(s)	672, 757, 892
Fnu4HI	GCNGC	6 cut(s)	139, 208, 211, 214, 549, 1021
FokI	GGATG	3 cut(s)	361, 863, 883
FriOI	GRGCYC	2 cut(s)	686, 975
Fsp4HI	GCNGC	6 cut(s)	139, 208, 211, 214, 549, 1021
GluI	GCNGC	6 cut(s)	139, 208, 211, 214, 549, 1021
HaeIII	GGCC	6 cut(s)	93, 369, 446, 467, 610, 684
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	3 cut(s)	676, 761, 896
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HinfI	GANTC	2 cut(s)	114, 1043
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	2 cut(s)	193, 909
Hpy166II	GTNNAC	3 cut(s)	889, 917, 927
Hpy188I	TCNGA	8 cut(s)	53, 113, 311, 358, 657, 833, 1035, 1048
Hpy188III	TCNNGA	3 cut(s)	168, 739, 983
Hpy8I	GTNNAC	3 cut(s)	889, 917, 927
HpyAV	CCTTC	3 cut(s)	15, 51, 380
HpyCH4III	ACNGT	5 cut(s)	61, 227, 512, 827, 924
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	5 cut(s)	455, 557, 672, 800, 978
HpyF10VI	GCNNNNNNNGC	6 cut(s)	159, 213, 375, 452, 554, 785
HpyF3I	CTNAG	5 cut(s)	50, 654, 815, 960, 967
HpySE526I	ACGT	1 cut(s)	530
Hsp92II	CATG	3 cut(s)	676, 761, 896
Kzo9I	GATC	2 cut(s)	170, 311
LmnI	GCTCC	2 cut(s)	522, 741
Lsp1109I	GCAGC	5 cut(s)	219, 222, 225, 535, 1007
LweI	GCATC	3 cut(s)	339, 349, 861
MaeII	ACGT	1 cut(s)	530
MaeIII	GTNAC	1 cut(s)	853
MalI	GATC	2 cut(s)	172, 313
MboI	GATC	2 cut(s)	170, 311
MboII	GAAGA	8 cut(s)	13, 100, 283, 352, 395, 512, 532, 682
MfeI	CAATTG	1 cut(s)	858
MhlI	GDGCHC	3 cut(s)	686, 968, 975
MluCI	AATT	2 cut(s)	858, 992
MluI	ACGCGT	1 cut(s)	376
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	8 cut(s)	48, 92, 104, 261, 330, 454, 496, 841
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	3 cut(s)	582, 605, 708
MslI	CAYNNNNRTG	2 cut(s)	762, 922
MspA1I	CMGCKG	1 cut(s)	1020
MspCI	CTTAAG	1 cut(s)	604
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	100, 365
MunI	CAATTG	1 cut(s)	858
MvaI	CCWGG	1 cut(s)	365
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	6 cut(s)	159, 213, 375, 452, 554, 785
NciI	CCSGG	1 cut(s)	100
NdeII	GATC	2 cut(s)	170, 311
NlaIII	CATG	3 cut(s)	676, 761, 896
NlaIV	GGNNCC	2 cut(s)	308, 684
NmuCI	GTSAC	1 cut(s)	853
OliI	CACNNNNGTG	1 cut(s)	922
PasI	CCCWGGG	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	1043
PkrI	GCNGC	6 cut(s)	140, 209, 212, 215, 550, 1022
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp1406I	AACGTT	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	308, 684
PspOMI	GGGCCC	1 cut(s)	682
PspPI	GGNCC	5 cut(s)	367, 682, 683, 767, 1031
PvuII	CAGCTG	1 cut(s)	1020
RsaI	GTAC	2 cut(s)	509, 928
RsaNI	GTAC	2 cut(s)	508, 927
RseI	CAYNNNNRTG	2 cut(s)	762, 922
SaqAI	TTAA	3 cut(s)	582, 605, 708
SatI	GCNGC	6 cut(s)	139, 208, 211, 214, 549, 1021
Sau3AI	GATC	2 cut(s)	170, 311
Sau96I	GGNCC	5 cut(s)	367, 682, 683, 767, 1031
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	100, 365
SduI	GDGCHC	3 cut(s)	686, 968, 975
SfaNI	GCATC	3 cut(s)	339, 349, 861
SfcI	CTRYAG	1 cut(s)	939
SinI	GGWCC	2 cut(s)	767, 1031
SmiMI	CAYNNNNRTG	2 cut(s)	762, 922
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
Sse9I	AATT	2 cut(s)	858, 992
SsiI	CCGC	2 cut(s)	139, 616
StyD4I	CCNGG	2 cut(s)	98, 363
StyI	CCWWGG	2 cut(s)	426, 664
TaaI	ACNGT	5 cut(s)	61, 227, 512, 827, 924
TaiI	ACGT	1 cut(s)	533
TasI	AATT	2 cut(s)	858, 992
TatI	WGTACW	2 cut(s)	507, 926
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	1043
Tru1I	TTAA	3 cut(s)	582, 605, 708
Tru9I	TTAA	3 cut(s)	582, 605, 708
TscAI	CASTG	4 cut(s)	397, 630, 700, 1044
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	5 cut(s)	207, 210, 213, 548, 1020
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	3 cut(s)	94, 689, 896
TspRI	CASTG	4 cut(s)	397, 630, 700, 1044
Vha464I	CTTAAG	1 cut(s)	604
VpaK11BI	GGWCC	2 cut(s)	767, 1031
XmnI	GAANNNNTTC	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.