FvH4_3g18550

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009248
Physical Location & Seq
Reverse (-)
11854432 .. 11858944
4513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18550.t1

Sequence Viewer

Length: 1044 bp
ATGCCTTCCTCCCCCAAGTTCTTCCACGCGCGCCACCCCCCCCCGGGCCGCCGATCAACGGTCCTGATCATCTCCTTCTGCCTCGTCTTCGGCCTCTCCGGCTTCATCTTCGGCCTCGTCGCGCTCCGCAGCAGCCACTACAAGTGCATCACAAGCCAGTCCAGATCGGTGCGCGTCGTCTGGGAGCGAATCGGCACCACCAGAAGCACCGAAAACGGCCTCGTTTTGAGCGACGGAGATGTAAGCGCCCAGCGGCATAAGGTCATGGGCTTCGTAGGGATTCAGACCGGGTTCGGATCCGTCGGCAGGAGAGAGTCGCTCCGGAAGACTTGGATGCCGTCCGATGCTCAGGGCCTTCAACGATTGGAAGAAGCTACTGGTTTGGCTTTTAGGTTTATCATTGGTAAGAGCAAGGATAAAGCTAAGATGTTGGAACTGGGGAAGGAAGTGGCGCGATACGACGATTTCCTGCTGTTGGATATTGAAGAGGAGTACAGTAAGCTCCCCTACAAAACATTGGCTTTCTTCAAAGCTGCCTATGCCCTTTTTGATTCCGACTTCTATGTCAAAGCTGATGACGATATTTACTTAAGGCCAGATCGCCTTTCGACGCTCTTGGCAAAAGAGCGTTCTCATTCTCAGACTTACCTTGGATGCATGAAAAAAGGCCCAGTCTTTACAGACCCAAAGCTTAAATGGTATGAGCCACTAGGGTATTTGCTGGGGAGTGAATACTTTTTCCATGCTTATGGTCCACTGTATGCTCTTTCTGCCGATGTTGTTGCAAGTTTGGTTGCTCTTAGGAATAACAGTTTTCGGATGTTTAGCAATGAGGATGTCACAATTGGTGCGTGGATGCTCGCAATGAACGTCAACCATGAGAACAACCAAGCACTATGCTCACCAGAATGTACATCATCATCTATTGCTGTTTGGGATATTCCTAAGTGCTCAGGGCTCTGCAATCCGGAAAAGAAACTGTTAGAACTACATCAAATGGACAGCTGTACAAAAAGTCCAACGATGGAATCTGATGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

348

Amino Acids

39.05

Weight (kDa)

8.04

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 103 - 296 4.4e-49 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 563
AccB1I GGYRCC 1 cut(s) 194
AccII CGCG 5 cut(s) 29, 31, 122, 174, 454
AccIII TCCGGA 2 cut(s) 321, 967
AciI CCGC 3 cut(s) 49, 127, 253
AclWI GGATC 2 cut(s) 291, 304
AfaI GTAC 3 cut(s) 494, 913, 1009
AfiI CCNNNNNNNGG 5 cut(s) 43, 44, 58, 306, 475
AflII CTTAAG 1 cut(s) 589
AgsI TTSAA 3 cut(s) 359, 485, 529
AluBI AGCT 7 cut(s) 374, 422, 502, 533, 572, 691, 1005
AluI AGCT 7 cut(s) 374, 422, 502, 533, 572, 691, 1005
Alw21I GWGCWC 1 cut(s) 953
AlwI GGATC 2 cut(s) 291, 304
Ama87I CYCGRG 1 cut(s) 43
Aor13HI TCCGGA 2 cut(s) 321, 967
AoxI GGCC 7 cut(s) 46, 91, 112, 217, 352, 593, 667
ApeKI GCWGC 3 cut(s) 129, 132, 533
AspLEI GCGC 6 cut(s) 31, 33, 124, 174, 248, 454
AspS9I GGNCC 5 cut(s) 46, 61, 352, 668, 752
AsuC2I CCSGG 3 cut(s) 44, 45, 289
AsuHPI GGTGA 1 cut(s) 894
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 2 cut(s) 61, 752
BamHI GGATCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 960
BbsI GAAGAC 2 cut(s) 79, 332
Bbv12I GWGCWC 1 cut(s) 953
BbvI GCAGC 3 cut(s) 141, 144, 520
BccI CCATC 1 cut(s) 1018
BceAI ACGGC 2 cut(s) 232, 322
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 3 cut(s) 44, 45, 289
BfaI CTAG 1 cut(s) 710
BfoI RGCGCY 1 cut(s) 249
BfrI CTTAAG 1 cut(s) 589
BglI GCCNNNNNGGC 1 cut(s) 99
BisI GCNGC 5 cut(s) 49, 130, 133, 254, 534
BlsI GCNGC 5 cut(s) 50, 131, 134, 255, 535
Bme1390I CCNGG 3 cut(s) 44, 45, 289
Bme18I GGWCC 2 cut(s) 61, 752
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 5 cut(s) 46, 61, 352, 668, 752
BmiI GGNNCC 2 cut(s) 196, 298
BmrFI CCNGG 3 cut(s) 44, 45, 289
BmrI ACTGGG 2 cut(s) 446, 665
BmsI GCATC 5 cut(s) 156, 324, 334, 644, 846
BmuI ACTGGG 2 cut(s) 446, 665
BpiI GAAGAC 2 cut(s) 79, 332
BplI GAGNNNNNCTC 2 cut(s) 303, 335
Bpu10I CCTNAGC 2 cut(s) 348, 952
BpuMI CCSGG 3 cut(s) 44, 45, 289
BsaJI CCNNGG 3 cut(s) 42, 43, 649
BsaWI WCCGGW 2 cut(s) 321, 967
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 44, 58, 306, 475
Bse1I ACTGG 4 cut(s) 157, 382, 441, 671
Bse3DI GCAATG 2 cut(s) 835, 870
BseAI TCCGGA 2 cut(s) 321, 967
BseDI CCNNGG 3 cut(s) 42, 43, 649
BseGI GGATG 5 cut(s) 339, 659, 825, 841, 861
BseLI CCNNNNNNNGG 5 cut(s) 43, 44, 58, 306, 475
BseMI GCAATG 2 cut(s) 835, 870
BseMII CTCAG 3 cut(s) 362, 653, 966
BseNI ACTGG 4 cut(s) 157, 382, 441, 671
BsePI GCGCGC 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 3 cut(s) 141, 144, 520
BseYI CCCAGC 2 cut(s) 249, 721
Bsh1236I CGCG 5 cut(s) 29, 31, 122, 174, 454
BshFI GGCC 7 cut(s) 48, 93, 114, 219, 354, 595, 669
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 953
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 5 cut(s) 44, 99, 288, 322, 968
BslI CCNNNNNNNGG 5 cut(s) 43, 44, 58, 306, 475
BsnI GGCC 7 cut(s) 48, 93, 114, 219, 354, 595, 669
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 953, 960
Bsp13I TCCGGA 2 cut(s) 321, 967
Bsp1407I TGTACA 2 cut(s) 911, 1007
Bsp143I GATC 5 cut(s) 53, 66, 164, 296, 598
BspACI CCGC 3 cut(s) 49, 127, 253
BspANI GGCC 7 cut(s) 48, 93, 114, 219, 354, 595, 669
BspCNI CTCAG 3 cut(s) 361, 652, 965
BspEI TCCGGA 2 cut(s) 321, 967
BspFNI CGCG 5 cut(s) 29, 31, 122, 174, 454
BspLI GGNNCC 2 cut(s) 196, 298
BspPI GGATC 2 cut(s) 291, 304
BspT107I GGYRCC 1 cut(s) 194
BspTI CTTAAG 1 cut(s) 589
BsrDI GCAATG 2 cut(s) 835, 870
BsrGI TGTACA 2 cut(s) 911, 1007
BsrI ACTGG 4 cut(s) 157, 382, 441, 671
BssECI CCNNGG 3 cut(s) 42, 43, 649
BssHII GCGCGC 1 cut(s) 29
BssMI GATC 5 cut(s) 53, 66, 164, 296, 598
BssT1I CCWWGG 1 cut(s) 649
Bst4CI ACNGT 5 cut(s) 61, 497, 759, 812, 981
Bst6I CTCTTC 1 cut(s) 480
BstAFI CTTAAG 1 cut(s) 589
BstAUI TGTACA 2 cut(s) 911, 1007
BstC8I GCNNGC 2 cut(s) 31, 861
BstDEI CTNAG 6 cut(s) 348, 423, 639, 800, 945, 952
BstF5I GGATG 5 cut(s) 339, 659, 825, 841, 861
BstFNI CGCG 5 cut(s) 29, 31, 122, 174, 454
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 6 cut(s) 31, 33, 124, 174, 248, 454
BstKTI GATC 5 cut(s) 56, 69, 167, 299, 601
BstMBI GATC 5 cut(s) 53, 66, 164, 296, 598
BstMWI GCNNNNNNNGC 4 cut(s) 99, 153, 539, 770
BstSCI CCNGG 3 cut(s) 42, 43, 287
BstUI CGCG 5 cut(s) 29, 31, 122, 174, 454
BstV1I GCAGC 3 cut(s) 141, 144, 520
BstV2I GAAGAC 2 cut(s) 79, 332
BstX2I RGATCY 1 cut(s) 296
BstXI CCANNNNNNTGG 1 cut(s) 749
BstYI RGATCY 1 cut(s) 296
BsuRI GGCC 7 cut(s) 48, 93, 114, 219, 354, 595, 669
BtsCI GGATG 5 cut(s) 339, 659, 825, 841, 861
BtsIMutI CAGTG 1 cut(s) 755
Cac8I GCNNGC 2 cut(s) 31, 861
CfoI GCGC 6 cut(s) 31, 33, 124, 174, 248, 454
Cfr13I GGNCC 5 cut(s) 46, 61, 352, 668, 752
Cfr9I CCCGGG 1 cut(s) 43
CseI GACGC 2 cut(s) 163, 619
Csp6I GTAC 3 cut(s) 493, 912, 1008
CviAII CATG 4 cut(s) 265, 658, 743, 878
CviQI GTAC 3 cut(s) 493, 912, 1008
DdeI CTNAG 6 cut(s) 348, 423, 639, 800, 945, 952
DpnI GATC 5 cut(s) 55, 68, 166, 298, 600
DpnII GATC 5 cut(s) 53, 66, 164, 296, 598
DrdI GACNNNNNNGTC 1 cut(s) 563
DseDI GACNNNNNNGTC 1 cut(s) 563
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 960
Eco47I GGWCC 2 cut(s) 61, 752
Eco88I CYCGRG 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 649
EcoT22I ATGCAT 1 cut(s) 659
EcoT38I GRGCYC 1 cut(s) 960
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 4 cut(s) 268, 661, 746, 881
FatI CATG 4 cut(s) 264, 657, 742, 877
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 5 cut(s) 49, 130, 133, 254, 534
FokI GGATG 5 cut(s) 346, 666, 832, 848, 868
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 5 cut(s) 49, 130, 133, 254, 534
FspBI CTAG 1 cut(s) 710
GlaI GCGC 6 cut(s) 30, 32, 123, 173, 247, 453
GluI GCNGC 5 cut(s) 49, 130, 133, 254, 534
GsaI CCCAGC 2 cut(s) 253, 725
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 7 cut(s) 48, 93, 114, 219, 354, 595, 669
HapII CCGG 5 cut(s) 44, 99, 288, 322, 968
HgaI GACGC 2 cut(s) 163, 619
HhaI GCGC 6 cut(s) 31, 33, 124, 174, 248, 454
Hin1II CATG 4 cut(s) 268, 661, 746, 881
Hin6I GCGC 6 cut(s) 29, 31, 122, 172, 246, 452
HinP1I GCGC 6 cut(s) 29, 31, 122, 172, 246, 452
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 5 cut(s) 189, 280, 314, 551, 1028
HpaII CCGG 5 cut(s) 44, 99, 288, 322, 968
HphI GGTGA 1 cut(s) 894
Hpy166II GTNNAC 2 cut(s) 755, 874
Hpy188I TCNGA 7 cut(s) 285, 296, 343, 556, 642, 819, 1033
Hpy188III TCNNGA 4 cut(s) 64, 162, 322, 968
Hpy8I GTNNAC 2 cut(s) 755, 874
Hpy99I CGWCG 6 cut(s) 122, 179, 236, 305, 464, 613
HpyAV CCTTC 4 cut(s) 15, 85, 365, 436
HpyCH4III ACNGT 5 cut(s) 61, 497, 759, 812, 981
HpyCH4IV ACGT 1 cut(s) 870
HpyCH4V TGCA 4 cut(s) 147, 657, 785, 963
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 153, 539, 770
HpyF3I CTNAG 6 cut(s) 348, 423, 639, 800, 945, 952
HpySE526I ACGT 1 cut(s) 870
Hsp92II CATG 4 cut(s) 268, 661, 746, 881
HspAI GCGC 6 cut(s) 29, 31, 122, 172, 246, 452
Kpn2I TCCGGA 2 cut(s) 321, 967
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 5 cut(s) 53, 66, 164, 296, 598
LmnI GCTCC 4 cut(s) 129, 184, 324, 507
Lsp1109I GCAGC 3 cut(s) 141, 144, 520
LweI GCATC 5 cut(s) 156, 324, 334, 644, 846
MaeI CTAG 1 cut(s) 710
MaeII ACGT 1 cut(s) 870
MaeIII GTNAC 1 cut(s) 838
MalI GATC 5 cut(s) 55, 68, 166, 298, 600
MboI GATC 5 cut(s) 53, 66, 164, 296, 598
MboII GAAGA 7 cut(s) 13, 79, 100, 337, 380, 497, 517
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 2 cut(s) 953, 960
MluCI AATT 1 cut(s) 843
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 4 cut(s) 411, 456, 579, 1043
MnlI CCTC 8 cut(s) 19, 92, 104, 125, 230, 481, 826, 1030
Mph1103I ATGCAT 1 cut(s) 659
MroI TCCGGA 2 cut(s) 321, 967
MseI TTAA 2 cut(s) 590, 693
MslI CAYNNNNRTG 2 cut(s) 747, 907
MspA1I CMGCKG 2 cut(s) 253, 1005
MspCI CTTAAG 1 cut(s) 589
MspI CCGG 5 cut(s) 44, 99, 288, 322, 968
MspR9I CCNGG 3 cut(s) 44, 45, 289
MunI CAATTG 1 cut(s) 843
MvnI CGCG 5 cut(s) 29, 31, 122, 174, 454
MwoI GCNNNNNNNGC 4 cut(s) 99, 153, 539, 770
NciI CCSGG 3 cut(s) 44, 45, 289
NdeII GATC 5 cut(s) 53, 66, 164, 296, 598
NlaIII CATG 4 cut(s) 268, 661, 746, 881
NlaIV GGNNCC 2 cut(s) 196, 298
NmuCI GTSAC 1 cut(s) 838
NsiI ATGCAT 1 cut(s) 659
PauI GCGCGC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 867
PfeI GAWTC 4 cut(s) 189, 280, 551, 1028
PkrI GCNGC 5 cut(s) 50, 131, 134, 255, 535
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PspFI CCCAGC 2 cut(s) 249, 721
PspN4I GGNNCC 2 cut(s) 196, 298
PspPI GGNCC 5 cut(s) 46, 61, 352, 668, 752
PsuI RGATCY 1 cut(s) 296
PteI GCGCGC 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 1005
RsaI GTAC 3 cut(s) 494, 913, 1009
RsaNI GTAC 3 cut(s) 493, 912, 1008
RseI CAYNNNNRTG 2 cut(s) 747, 907
SaqAI TTAA 2 cut(s) 590, 693
SatI GCNGC 5 cut(s) 49, 130, 133, 254, 534
Sau3AI GATC 5 cut(s) 53, 66, 164, 296, 598
Sau96I GGNCC 5 cut(s) 46, 61, 352, 668, 752
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 3 cut(s) 44, 45, 289
SduI GDGCHC 2 cut(s) 953, 960
SfaNI GCATC 5 cut(s) 156, 324, 334, 644, 846
SinI GGWCC 2 cut(s) 61, 752
SmaI CCCGGG 1 cut(s) 45
SmiMI CAYNNNNRTG 2 cut(s) 747, 907
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 1 cut(s) 843
SsiI CCGC 3 cut(s) 49, 127, 253
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 3 cut(s) 42, 43, 287
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 5 cut(s) 61, 497, 759, 812, 981
TaiI ACGT 1 cut(s) 873
TaqI TCGA 1 cut(s) 608
TasI AATT 1 cut(s) 843
TatI WGTACW 3 cut(s) 492, 911, 1007
TauI GCSGC 2 cut(s) 51, 256
TfiI GAWTC 4 cut(s) 189, 280, 551, 1028
Tru1I TTAA 2 cut(s) 590, 693
Tru9I TTAA 2 cut(s) 590, 693
TscAI CASTG 1 cut(s) 762
TseFI GTSAC 1 cut(s) 838
TseI GCWGC 3 cut(s) 129, 132, 533
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 3 cut(s) 94, 674, 881
TspGWI ACGGA 2 cut(s) 249, 289
TspMI CCCGGG 1 cut(s) 43
TspRI CASTG 1 cut(s) 762
Vha464I CTTAAG 1 cut(s) 589
VpaK11BI GGWCC 2 cut(s) 61, 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 693
XmaI CCCGGG 1 cut(s) 43
XspI CTAG 1 cut(s) 710
Zsp2I ATGCAT 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.