Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012170

Physical Location & Seq

Genomic Coordinates Reverse (-)

19991271 .. 19993458

Gene Structure 2188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTGATGACACATTTTTCACGTCTCCGACAACTTCTTCTTCTCCAACCCAAATTCCTCTCTTCTCAACCTCGTCCTCTCCGTTCTCCTCCTCCAACATTTCTCCGATCAGTGATGGGTTCGTCTTCTTCTTTCTCCTCTTCTTCCTCGAAGCTTCTCTTTCGTCAACTCTTTGAGAACGAATCTTCCACCTTTACTTATCTTCTCGCCGACGTTTCTCATCCTGATAAACCTGCTTTGTTGATTGATCCGGTGGACAAGACTGTGGATAGAGACTTGAAACTGATTGATGAGTTAGGACTAAAGCTTATCTATGCTATGAACACTCATGTTCATGCTGATCATGTCACTGGTACTGGACTTCTTAAGACGAAGCTCCCGGGTGTGAAATCCGTTATTTCGAAAGCAAGTGGTTCCAAAGCTGATTTGTTTCTTGAACCTGGTGACAAAGTATCTATTGGTGATATATACCTTGAGGTTCGTGCTACACCTGGACACACTGCAGGATGTGTTACATATGTGACTGGTGAAGGAGCTGATCAGCCCCAACCAAGAATGGCTTTTACCGGGGATGCTGTACTCATCCGTGGTTGTGGGAGGACTGACTTTCAGGAAGGAAGCTCAGATCAACTCTACGAGTCTGTACATTCACAGATATTTACATTGCCAAAGGACACATTGATCTATCCTGCTCACGACTACAAAGGTTTCGAGGTAAGTACAGTTGGAGAAGAGATGCAACACAACCCGCGTCTAACTAAAGATAAAGAAACATTCAAAACCATTATGTCAAATCTGAATCTGTCGTATCCGAAGATGATTGATGTTGCAGTACCAGCAAATATGGTCTGTGGGTTACAAGATGTGCCTTCTCAAGCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0010154 GO:0016491 GO:0016701 GO:0016702 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050313 GO:0050896 GO:0051213 GO:0055114 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00920 map00920

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

294

Amino Acids

32.33

Weight (kDa)

6.5

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	64 - 232	2.1e-11	Metallo-beta-lactamase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53580 AT1G53580
fragaria_vesca	FvH4_6g38610
malus_domestica	MD09G1149000.v1.1 MD17G1135300.v1.1
prunus_persica	Prupe.3G177200_v2.0.a1
pyrus_communis	pycom09g06850 pycom17g12930
rosa_chinensis	RchiOBHm_Chr2g0152061
rosa_laevigata	RLG00000020603
rosa_multiflora	Rmu_sc0000760.1_g000022
rosa_roxburghii	Rroxscaffold_2G00096020
rosa_rugosa	Rorug02G0430500 Rorug02G0430500
rosa_samantha	Rh2AG491300 Rh2BG503700 Rh2CG477700 Rh2DG514900
rosa_wichuraiana	Rw2G040390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccII	CGCG	1 cut(s)	751
AciI	CCGC	1 cut(s)	749
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	5 cut(s)	355, 579, 645, 721, 834
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	280, 437, 778
AjiI	CACGTC	1 cut(s)	23
AjnI	CCWGG	2 cut(s)	439, 490
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
AluBI	AGCT	6 cut(s)	154, 307, 376, 422, 536, 621
AluI	AGCT	6 cut(s)	154, 307, 376, 422, 536, 621
Alw26I	GTCTC	2 cut(s)	29, 267
AlwI	GGATC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	53
AsuC2I	CCSGG	3 cut(s)	380, 381, 568
AsuHPI	GGTGA	4 cut(s)	16, 455, 473, 539
AsuII	TTCGAA	1 cut(s)	401
AvaI	CYCGRG	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	117
BccI	CCATC	1 cut(s)	109
BciT130I	CCWGG	2 cut(s)	441, 492
BciVI	GTATCC	1 cut(s)	819
BclI	TGATCA	2 cut(s)	340, 538
BcnI	CCSGG	3 cut(s)	380, 381, 568
BcoDI	GTCTC	2 cut(s)	29, 267
BfmI	CTRYAG	1 cut(s)	501
BfrI	CTTAAG	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	819
Bme1390I	CCNGG	5 cut(s)	380, 381, 441, 492, 568
BmeT110I	CYCGRG	1 cut(s)	379
BmgBI	CACGTC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	5 cut(s)	380, 381, 441, 492, 568
BmsI	GCATC	2 cut(s)	562, 726
BpiI	GAAGAC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	401
BpuEI	CTTGAG	2 cut(s)	494, 858
BpuMI	CCSGG	3 cut(s)	380, 381, 568
BsaJI	CCNNGG	3 cut(s)	379, 567, 586
BsaWI	WCCGGW	1 cut(s)	250
Bse1I	ACTGG	3 cut(s)	355, 361, 529
Bse3DI	GCAATG	1 cut(s)	662
BseBI	CCWGG	2 cut(s)	441, 492
BseDI	CCNNGG	3 cut(s)	379, 567, 586
BseGI	GGATG	4 cut(s)	220, 512, 577, 582
BseMI	GCAATG	1 cut(s)	662
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	3 cut(s)	355, 361, 529
BseRI	GAGGAG	3 cut(s)	78, 81, 127
Bsh1236I	CGCG	1 cut(s)	751
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	3 cut(s)	251, 380, 567
BsmAI	GTCTC	2 cut(s)	29, 267
BsmBI	CGTCTC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	379
Bsp119I	TTCGAA	1 cut(s)	401
Bsp1407I	TGTACA	1 cut(s)	643
Bsp143I	GATC	6 cut(s)	107, 247, 340, 538, 625, 681
BspACI	CCGC	1 cut(s)	749
BspCNI	CTCAG	1 cut(s)	635
BspFNI	CGCG	1 cut(s)	751
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	401
BspTI	CTTAAG	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	662
BsrGI	TGTACA	1 cut(s)	643
BsrI	ACTGG	3 cut(s)	355, 361, 529
BssECI	CCNNGG	3 cut(s)	379, 567, 586
BssMI	GATC	6 cut(s)	107, 247, 340, 538, 625, 681
Bst2UI	CCWGG	2 cut(s)	441, 492
Bst4CI	ACNGT	2 cut(s)	265, 724
Bst6I	CTCTTC	3 cut(s)	67, 145, 726
BstAFI	CTTAAG	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	643
BstBI	TTCGAA	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	622
BstDSI	CCRYGG	1 cut(s)	586
BstF5I	GGATG	4 cut(s)	220, 512, 577, 582
BstFNI	CGCG	1 cut(s)	751
BstKTI	GATC	6 cut(s)	110, 250, 343, 541, 628, 684
BstMAI	GTCTC	2 cut(s)	29, 267
BstMBI	GATC	6 cut(s)	107, 247, 340, 538, 625, 681
BstMWI	GCNNNNNNNGC	1 cut(s)	836
BstNI	CCWGG	2 cut(s)	441, 492
BstSCI	CCNGG	5 cut(s)	378, 379, 439, 490, 566
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	751
BstV2I	GAAGAC	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	819
BtgI	CCRYGG	1 cut(s)	586
BtrI	CACGTC	1 cut(s)	23
BtsCI	GGATG	4 cut(s)	220, 512, 577, 582
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	117, 348, 498
BveI	ACCTGC	1 cut(s)	241
Cfr9I	CCCGGG	1 cut(s)	379
CseI	GACGC	1 cut(s)	740
CsiI	ACCWGGT	1 cut(s)	439
Csp6I	GTAC	5 cut(s)	354, 578, 644, 720, 833
CviAII	CATG	3 cut(s)	329, 335, 344
CviJI	RGCY	9 cut(s)	154, 307, 376, 422, 536, 544, 560, 621, 878
CviKI_1	RGCY	9 cut(s)	154, 307, 376, 422, 536, 544, 560, 621, 878
CviQI	GTAC	5 cut(s)	354, 578, 644, 720, 833
DdeI	CTNAG	1 cut(s)	622
DpnI	GATC	6 cut(s)	109, 249, 342, 540, 627, 683
DpnII	GATC	6 cut(s)	107, 247, 340, 538, 625, 681
Eam1104I	CTCTTC	3 cut(s)	67, 145, 726
EarI	CTCTTC	3 cut(s)	67, 145, 726
Eco88I	CYCGRG	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	439, 490
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	3 cut(s)	332, 338, 347
FalI	AAGNNNNNCTT	4 cut(s)	143, 175, 544, 576
FatI	CATG	3 cut(s)	328, 334, 343
FauI	CCCGC	1 cut(s)	756
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	2 cut(s)	340, 538
FokI	GGATG	4 cut(s)	207, 519, 569, 584
HapII	CCGG	3 cut(s)	251, 380, 567
HgaI	GACGC	1 cut(s)	740
Hin1II	CATG	3 cut(s)	332, 338, 347
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HindIII	AAGCTT	2 cut(s)	152, 305
HinfI	GANTC	3 cut(s)	182, 638, 799
HpaII	CCGG	3 cut(s)	251, 380, 567
HphI	GGTGA	4 cut(s)	16, 455, 473, 539
Hpy166II	GTNNAC	2 cut(s)	167, 256
Hpy188I	TCNGA	5 cut(s)	29, 107, 625, 798, 813
Hpy188III	TCNNGA	4 cut(s)	224, 434, 611, 695
Hpy8I	GTNNAC	2 cut(s)	167, 256
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	524, 608, 879
HpyCH4III	ACNGT	2 cut(s)	265, 724
HpyCH4IV	ACGT	2 cut(s)	22, 213
HpyCH4V	TGCA	3 cut(s)	503, 739, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	836
HpyF3I	CTNAG	1 cut(s)	622
HpySE526I	ACGT	2 cut(s)	22, 213
Hsp92II	CATG	3 cut(s)	332, 338, 347
Ksp22I	TGATCA	2 cut(s)	340, 538
Kzo9I	GATC	6 cut(s)	107, 247, 340, 538, 625, 681
LmnI	GCTCC	2 cut(s)	381, 533
LweI	GCATC	2 cut(s)	562, 726
MabI	ACCWGGT	1 cut(s)	439
MaeII	ACGT	2 cut(s)	22, 213
MaeIII	GTNAC	5 cut(s)	346, 443, 511, 520, 855
MalI	GATC	6 cut(s)	109, 249, 342, 540, 627, 683
MboI	GATC	6 cut(s)	107, 247, 340, 538, 625, 681
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	4 cut(s)	52, 70, 119, 706
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	333
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	3 cut(s)	251, 380, 567
MspR9I	CCNGG	5 cut(s)	380, 381, 441, 492, 568
MvaI	CCWGG	2 cut(s)	441, 492
MvnI	CGCG	1 cut(s)	751
MwoI	GCNNNNNNNGC	1 cut(s)	836
NciI	CCSGG	3 cut(s)	380, 381, 568
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	6 cut(s)	107, 247, 340, 538, 625, 681
NlaIII	CATG	3 cut(s)	332, 338, 347
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	3 cut(s)	346, 443, 520
NspV	TTCGAA	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	182, 799
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
Psp6I	CCWGG	2 cut(s)	439, 490
PspGI	CCWGG	2 cut(s)	439, 490
PspN4I	GGNNCC	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	505
RsaI	GTAC	5 cut(s)	355, 579, 645, 721, 834
RsaNI	GTAC	5 cut(s)	354, 578, 644, 720, 833
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	366
Sau3AI	GATC	6 cut(s)	107, 247, 340, 538, 625, 681
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	5 cut(s)	380, 381, 441, 492, 568
SexAI	ACCWGGT	1 cut(s)	439
SfaNI	GCATC	2 cut(s)	562, 726
SfcI	CTRYAG	1 cut(s)	501
SfuI	TTCGAA	1 cut(s)	401
SmaI	CCCGGG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	3 cut(s)	365, 473, 873
SmoI	CTYRAG	3 cut(s)	365, 473, 873
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	749
StyD4I	CCNGG	5 cut(s)	378, 379, 439, 490, 566
TaaI	ACNGT	2 cut(s)	265, 724
TaiI	ACGT	2 cut(s)	25, 216
TaqI	TCGA	3 cut(s)	149, 401, 711
TasI	AATT	1 cut(s)	53
TatI	WGTACW	3 cut(s)	577, 643, 719
TfiI	GAWTC	2 cut(s)	182, 799
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	3 cut(s)	117, 355, 505
TseFI	GTSAC	3 cut(s)	346, 443, 520
Tsp45I	GTSAC	3 cut(s)	346, 443, 520
TspDTI	ATGAA	2 cut(s)	323, 335
TspGWI	ACGGA	3 cut(s)	71, 382, 575
TspMI	CCCGGG	1 cut(s)	379
TspRI	CASTG	3 cut(s)	117, 355, 505
Vha464I	CTTAAG	1 cut(s)	365
XapI	RAATTY	1 cut(s)	53
XmaI	CCCGGG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.