Prupe.3G177200_v2.0.a1

Persulfide dioxygenase ETHE1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012170
Physical Location & Seq
Reverse (-)
19430381 .. 19434025
3645 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G177200.1

Sequence Viewer

Length: 903 bp
ATGCTTCGAATCAGTCTCCTCAGATTTCTCTCTCTTCCTTCTCGCTCCTCTTCTTCTTCTTCCCTTTTCTTCAATCCCGTTTCTCCCTGTTCCCATTCCCAAAGCATGGCCACCTGTGCTTACACGACGTCGTCTGACTCCGCCTCCTCTGCGAAGCTCCTCTTCCGCCAGCTCTTCGAGAAGGAGTCCTCTACGTACACTTACTTGCTCGCCGACGTCGCTCACCCCGACAGACCCGCTCTGTTGATTGACCCGGTGGACAAGATGGTGGATAGGGATATCTCCCTTGTCAAAGAGTTGGGTTTGAAGCTAATTTATGCCATGAACACTCATGTTCATGCTGATCATGTCACTGGCACTGGCCTCATCAAGACTAAGCTTCCTGGTGTCAAATCTATCATTTCGAAGGCGAGCAACTCAAAAGCAGACCGTCTGATTGAAGCTGGTGAAAAAATACATTTCGGCGATCTGTTTTTGGAGGTTCGAGCTACTCCTGGGCATACATTAGGTTGTGTTACCTATGTTACAGGAGATGGGCCTAATCAGCCCCAACCAAGGATGGCTTTCACTGGAGATGCTTTACTCATACGGGGTTGTGGGAGAACTGATTTTCAGGGTGGCAGTTCACATCAACTGTACAAGTCAGTTCATTCACAGATTTTCACATTGCCAAAGAATACGTTGATCTATCCTGCTCATGATTACAAGGGATTCAGTGTTAGCACCGTTGGTGAGGAGATGCTTTATAATCCTCGACTCACTAAAGATGAGGAAACATTTCAAAATATCATGGAAAATCTAAAACTCTCATATCCGAAAATGATTGACATAGCTGTACCTGCGAATATGGTTTGTGGATTGCAAGATTTGTCTGAAAGGCCTGTTGAGTCTGTGTCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 map00920
Pfam Domains
Protein Families
Lactamase_B

Protein Analysis

301

Amino Acids

32.98

Weight (kDa)

7.14

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53580 AT1G53580
fragaria_vesca FvH4_6g38610
malus_domestica MD09G1149000.v1.1 MD17G1135300.v1.1
prunus_persica Prupe.3G177200_v2.0.a1
pyrus_communis pycom09g06850 pycom17g12930
rosa_chinensis RchiOBHm_Chr2g0152061
rosa_laevigata RLG00000020603
rosa_multiflora Rmu_sc0000760.1_g000022
rosa_roxburghii Rroxscaffold_2G00096020
rosa_rugosa Rorug02G0430500 Rorug02G0430500
rosa_samantha Rh2AG491300 Rh2BG503700 Rh2CG477700 Rh2DG514900
rosa_wichuraiana Rw2G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
AatII GACGTC 2 cut(s) 131, 219
Acc36I ACCTGC 1 cut(s) 847
AccB7I CCANNNNNTGG 1 cut(s) 106
AccBSI CCGCTC 1 cut(s) 239
AciI CCGC 3 cut(s) 141, 166, 237
AcoI YGGCCR 1 cut(s) 108
AcyI GRCGYC 2 cut(s) 128, 216
AfaI GTAC 3 cut(s) 197, 638, 837
AfiI CCNNNNNNNGG 2 cut(s) 106, 555
AgsI TTSAA 4 cut(s) 73, 307, 440, 782
AjnI CCWGG 2 cut(s) 382, 493
AluBI AGCT 7 cut(s) 157, 172, 310, 379, 443, 488, 833
AluI AGCT 7 cut(s) 157, 172, 310, 379, 443, 488, 833
Alw26I GTCTC 1 cut(s) 20
AoxI GGCC 4 cut(s) 108, 361, 536, 878
Asp700I GAANNNNTTC 1 cut(s) 777
AspS9I GGNCC 1 cut(s) 536
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 3 cut(s) 215, 458, 743
AsuII TTCGAA 2 cut(s) 7, 404
BalI TGGCCA 1 cut(s) 110
BccI CCATC 3 cut(s) 259, 527, 553
BciT130I CCWGG 2 cut(s) 384, 495
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 901
BfuAI ACCTGC 1 cut(s) 847
Bme1390I CCNGG 3 cut(s) 254, 384, 495
BmgT120I GGNCC 1 cut(s) 536
BmrFI CCNGG 3 cut(s) 254, 384, 495
BmsI GCATC 2 cut(s) 565, 729
BpmI CTGGAG 1 cut(s) 591
Bpu14I TTCGAA 2 cut(s) 7, 404
BpuMI CCSGG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 195
BsaHI GRCGYC 2 cut(s) 128, 216
BsaJI CCNNGG 2 cut(s) 494, 554
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 555
Bse1I ACTGG 3 cut(s) 358, 364, 574
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 2 cut(s) 384, 495
BseDI CCNNGG 2 cut(s) 494, 554
BseGI GGATG 1 cut(s) 564
BseLI CCNNNNNNNGG 2 cut(s) 106, 555
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 3 cut(s) 358, 364, 574
BseRI GAGGAG 5 cut(s) 8, 37, 136, 149, 749
BshFI GGCC 4 cut(s) 110, 363, 538, 880
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 106, 555
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 4 cut(s) 110, 363, 538, 880
Bsp119I TTCGAA 2 cut(s) 7, 404
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 3 cut(s) 343, 466, 684
BspACI CCGC 3 cut(s) 141, 166, 237
BspANI GGCC 4 cut(s) 110, 363, 538, 880
BspCNI CTCAG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 697
BspMI ACCTGC 1 cut(s) 847
BspQI GCTCTTC 1 cut(s) 179
BspT104I TTCGAA 2 cut(s) 7, 404
BsrBI CCGCTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 665
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 3 cut(s) 358, 364, 574
BssECI CCNNGG 2 cut(s) 494, 554
BssMI GATC 3 cut(s) 343, 466, 684
BssNI GRCGYC 2 cut(s) 128, 216
BssT1I CCWWGG 1 cut(s) 554
Bst2UI CCWGG 2 cut(s) 384, 495
Bst4CI ACNGT 3 cut(s) 431, 636, 727
Bst6I CTCTTC 4 cut(s) 39, 55, 167, 179
BstACI GRCGYC 2 cut(s) 128, 216
BstAUI TGTACA 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 195
BstBI TTCGAA 2 cut(s) 7, 404
BstC8I GCNNGC 3 cut(s) 170, 210, 412
BstDEI CTNAG 2 cut(s) 20, 375
BstF5I GGATG 1 cut(s) 564
BstKTI GATC 3 cut(s) 346, 469, 687
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 3 cut(s) 343, 466, 684
BstMWI GCNNNNNNNGC 5 cut(s) 116, 149, 218, 544, 839
BstNI CCWGG 2 cut(s) 384, 495
BstSCI CCNGG 3 cut(s) 252, 382, 493
BstSNI TACGTA 1 cut(s) 195
BsuRI GGCC 4 cut(s) 110, 363, 538, 880
BtsCI GGATG 1 cut(s) 564
BtsIMutI CAGTG 4 cut(s) 351, 357, 567, 721
BveI ACCTGC 1 cut(s) 847
Cac8I GCNNGC 3 cut(s) 170, 210, 412
CciI TCATGA 1 cut(s) 697
Cfr13I GGNCC 1 cut(s) 536
Csp6I GTAC 3 cut(s) 196, 637, 836
CviAII CATG 7 cut(s) 106, 322, 332, 338, 347, 698, 790
CviQI GTAC 3 cut(s) 196, 637, 836
DdeI CTNAG 2 cut(s) 20, 375
DpnI GATC 3 cut(s) 345, 468, 686
DpnII GATC 3 cut(s) 343, 466, 684
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 4 cut(s) 39, 55, 167, 179
EarI CTCTTC 4 cut(s) 39, 55, 167, 179
EciI GGCGGA 2 cut(s) 130, 155
Eco105I TACGTA 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 554
Eco147I AGGCCT 1 cut(s) 880
Eco32I GATATC 1 cut(s) 280
EcoRII CCWGG 2 cut(s) 382, 493
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 554
FaeI CATG 7 cut(s) 109, 325, 335, 341, 350, 701, 793
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 547, 579
FatI CATG 7 cut(s) 105, 321, 331, 337, 346, 697, 789
FauI CCCGC 1 cut(s) 244
FbaI TGATCA 1 cut(s) 343
FokI GGATG 1 cut(s) 571
FspBI CTAG 1 cut(s) 901
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 4 cut(s) 110, 363, 538, 880
HapII CCGG 1 cut(s) 254
Hin1I GRCGYC 2 cut(s) 128, 216
Hin1II CATG 7 cut(s) 109, 325, 335, 341, 350, 701, 793
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 6 cut(s) 9, 137, 185, 711, 756, 887
HpaII CCGG 1 cut(s) 254
HphI GGTGA 3 cut(s) 215, 458, 743
Hpy166II GTNNAC 3 cut(s) 198, 259, 626
Hpy188I TCNGA 5 cut(s) 23, 136, 435, 816, 874
Hpy188III TCNNGA 3 cut(s) 178, 370, 698
Hpy8I GTNNAC 3 cut(s) 198, 259, 626
Hpy99I CGWCG 4 cut(s) 130, 133, 218, 221
HpyAV CCTTC 3 cut(s) 48, 175, 400
HpyCH4III ACNGT 3 cut(s) 431, 636, 727
HpyCH4IV ACGT 4 cut(s) 128, 194, 216, 680
HpyCH4V TGCA 1 cut(s) 862
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 149, 218, 544, 839
HpyF3I CTNAG 2 cut(s) 20, 375
HpySE526I ACGT 4 cut(s) 128, 194, 216, 680
Hsp92I GRCGYC 2 cut(s) 128, 216
Hsp92II CATG 7 cut(s) 109, 325, 335, 341, 350, 701, 793
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 343, 466, 684
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 2 cut(s) 50, 162
LweI GCATC 2 cut(s) 565, 729
MaeI CTAG 1 cut(s) 901
MaeII ACGT 4 cut(s) 128, 194, 216, 680
MaeIII GTNAC 3 cut(s) 349, 514, 523
MalI GATC 3 cut(s) 345, 468, 686
MbiI CCGCTC 1 cut(s) 239
MboI GATC 3 cut(s) 343, 466, 684
MboII GAAGA 8 cut(s) 26, 42, 45, 48, 51, 61, 154, 166
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 1 cut(s) 312
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 4 cut(s) 131, 194, 750, 896
Mox20I TGGCCA 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 777
MscI TGGCCA 1 cut(s) 110
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 110
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 3 cut(s) 254, 384, 495
MvaI CCWGG 2 cut(s) 384, 495
MwoI GCNNNNNNNGC 5 cut(s) 116, 149, 218, 544, 839
NciI CCSGG 1 cut(s) 254
NdeII GATC 3 cut(s) 343, 466, 684
NlaIII CATG 7 cut(s) 109, 325, 335, 341, 350, 701, 793
NmuCI GTSAC 1 cut(s) 349
NspV TTCGAA 2 cut(s) 7, 404
PagI TCATGA 1 cut(s) 697
PceI AGGCCT 1 cut(s) 880
PciSI GCTCTTC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 2 cut(s) 9, 711
PflFI GACNNNGTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 106
PleI GAGTC 4 cut(s) 131, 193, 750, 895
PpsI GAGTC 4 cut(s) 131, 193, 750, 895
Ppu21I YACGTR 1 cut(s) 195
PsiI TTATAA 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 382, 493
PspGI CCWGG 2 cut(s) 382, 493
PspPI GGNCC 1 cut(s) 536
PsyI GACNNNGTC 1 cut(s) 130
RsaI GTAC 3 cut(s) 197, 638, 837
RsaNI GTAC 3 cut(s) 196, 637, 836
RseI CAYNNNNRTG 1 cut(s) 336
SapI GCTCTTC 1 cut(s) 179
Sau3AI GATC 3 cut(s) 343, 466, 684
Sau96I GGNCC 1 cut(s) 536
SchI GAGTC 4 cut(s) 131, 194, 750, 896
ScrFI CCNGG 3 cut(s) 254, 384, 495
SfaNI GCATC 2 cut(s) 565, 729
SfuI TTCGAA 2 cut(s) 7, 404
SmiMI CAYNNNNRTG 1 cut(s) 336
SnaBI TACGTA 1 cut(s) 195
Sse9I AATT 1 cut(s) 312
SseBI AGGCCT 1 cut(s) 880
SsiI CCGC 3 cut(s) 141, 166, 237
SspMI CTAG 1 cut(s) 901
StuI AGGCCT 1 cut(s) 880
StyD4I CCNGG 3 cut(s) 252, 382, 493
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 3 cut(s) 431, 636, 727
TaiI ACGT 4 cut(s) 131, 197, 219, 683
TaqI TCGA 5 cut(s) 7, 177, 404, 484, 754
TasI AATT 1 cut(s) 312
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 2 cut(s) 9, 711
TscAI CASTG 4 cut(s) 358, 364, 574, 721
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 3 cut(s) 326, 338, 638
TspRI CASTG 4 cut(s) 358, 364, 574, 721
Tth111I GACNNNGTC 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 1 cut(s) 901
ZraI GACGTC 2 cut(s) 129, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.