Rh2CG477700

Persulfide dioxygenase ETHE1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012170
Physical Location & Seq
Reverse (-)
64296227 .. 64298852
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG477700.1

Sequence Viewer

Length: 873 bp
ATGCTTCGACTCAGTCTCCTCCCATTTCATCGTTTTCCAATCTCTTCCCATTTCCTCAATCTCTCTCCCAAGTCCACAATGGCCGTCTCTGCTTCTTACACGACGTCGTCACACTCCTCCTCCAAGCTTCTCTTCCGTCAGCTCTTCGAGAAGGAGTCCTCCACCTACACTTACCTCCTCGCCGACGTGTCCCACCCCGATAAACCCGCCCTGTTGATTGATCCTGTGGACAAAACAGTGGATAGGGATCTTTCCCTTGTTAAAGAGTTGGGTTTGAAGCTGGTTTATGCTATGAACACTCATGTTCATGCTGATCATGTCACTGGCACTGGTCTCATCAAGAGTAAGCTTGATGGTGTGAAATCTGTGATTTCAAGGGCAAGCAAGTCAAAAGCTGATCATCTGATTGAAGCTGGTGATAAAATCTATTTTGGAGACATGTTTTTGGAGGTTCGAGCTACTCCTGGGCATACGTTGGGTTGTGTCACCTATGTTACAGGTGATGGGCCTAATCAGCCTCAACCAAGAATGGCTTTCACTGGAGATGCTCTACTCATACGTGGATGTGGGCGAACTGATTTTCAGGGTGGCAGCTCAGATCAACTCTATGAGTCAGTCCATTCACAGATTTTCACATTGCCAAAGGATACATTAATCTATCCTGCTCATGATTACAAGGGATTCACTGTTAGCACTGTGGGGGAGGAGATGCTCTATAATCCCCGGCTTACAAAAAATAAGGAGGGATTTGAAGATATCATGAAAAATCTAAAACTCGCATATCCCAAAATGATTGACATAGCTGTGCCTGCAAATATGGTTTGTGGATTGCAAGATTTGTCTGAAAGGCCTGCTGAGTCCGTATCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 map00920
Pfam Domains
Protein Families
Lactamase_B

Protein Analysis

290

Amino Acids

31.99

Weight (kDa)

6.83

Isoelectric Point (pI)

26.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 55 - 223 5.5e-11 Metallo-beta-lactamase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53580 AT1G53580
fragaria_vesca FvH4_6g38610
malus_domestica MD09G1149000.v1.1 MD17G1135300.v1.1
prunus_persica Prupe.3G177200_v2.0.a1
pyrus_communis pycom09g06850 pycom17g12930
rosa_chinensis RchiOBHm_Chr2g0152061
rosa_laevigata RLG00000020603
rosa_multiflora Rmu_sc0000760.1_g000022
rosa_roxburghii Rroxscaffold_2G00096020
rosa_rugosa Rorug02G0430500 Rorug02G0430500
rosa_samantha Rh2AG491300 Rh2BG503700 Rh2CG477700 Rh2DG514900
rosa_wichuraiana Rw2G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 107
AciI CCGC 1 cut(s) 207
AclWI GGATC 2 cut(s) 215, 255
AcoI YGGCCR 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 104
AflIII ACRYGT 2 cut(s) 186, 438
AgsI TTSAA 4 cut(s) 277, 375, 410, 752
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 9 cut(s) 127, 142, 280, 349, 395, 413, 458, 594, 803
AluI AGCT 9 cut(s) 127, 142, 280, 349, 395, 413, 458, 594, 803
Alw26I GTCTC 4 cut(s) 20, 91, 338, 429
AlwI GGATC 2 cut(s) 215, 255
AoxI GGCC 3 cut(s) 81, 506, 848
ApeKI GCWGC 1 cut(s) 591
AseI ATTAAT 1 cut(s) 653
AspS9I GGNCC 1 cut(s) 506
AsuC2I CCSGG 1 cut(s) 724
AsuHPI GGTGA 3 cut(s) 428, 478, 512
BbvI GCAGC 1 cut(s) 603
BccI CCATC 2 cut(s) 347, 497
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 465
BciVI GTATCC 1 cut(s) 640
BclI TGATCA 2 cut(s) 313, 397
BcnI CCSGG 1 cut(s) 724
BcoDI GTCTC 4 cut(s) 20, 91, 338, 429
BfaI CTAG 1 cut(s) 871
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 1 cut(s) 592
BlsI GCNGC 1 cut(s) 593
Bme1390I CCNGG 2 cut(s) 465, 724
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 506
BmrFI CCNGG 2 cut(s) 465, 724
BmsI GCATC 2 cut(s) 535, 699
BpmI CTGGAG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 724
BsaAI YACGTR 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 464, 722
BsaXI ACNNNNNCTCC 3 cut(s) 30, 104, 134
Bse1I ACTGG 3 cut(s) 328, 334, 544
Bse3DI GCAATG 1 cut(s) 635
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 2 cut(s) 464, 722
BseGI GGATG 1 cut(s) 569
BseJI GATNNNNATC 1 cut(s) 246
BseMI GCAATG 1 cut(s) 635
BseMII CTCAG 3 cut(s) 25, 609, 846
BseNI ACTGG 3 cut(s) 328, 334, 544
BseRI GAGGAG 5 cut(s) 8, 106, 109, 167, 719
BseXI GCAGC 1 cut(s) 603
BshFI GGCC 3 cut(s) 83, 508, 850
BsiSI CCGG 1 cut(s) 724
BslFI GGGAC 1 cut(s) 175
BsmAI GTCTC 4 cut(s) 20, 91, 338, 429
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 3 cut(s) 83, 508, 850
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 5 cut(s) 220, 247, 313, 397, 598
BspACI CCGC 1 cut(s) 207
BspANI GGCC 3 cut(s) 83, 508, 850
BspCNI CTCAG 3 cut(s) 24, 608, 847
BspHI TCATGA 2 cut(s) 667, 759
BspPI GGATC 2 cut(s) 215, 255
BspQI GCTCTTC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 635
BsrI ACTGG 3 cut(s) 328, 334, 544
BssECI CCNNGG 2 cut(s) 464, 722
BssMI GATC 5 cut(s) 220, 247, 313, 397, 598
BssNI GRCGYC 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 3 cut(s) 238, 688, 697
Bst6I CTCTTC 3 cut(s) 49, 137, 149
BstACI GRCGYC 1 cut(s) 104
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 3 cut(s) 382, 810, 852
BstDEI CTNAG 3 cut(s) 11, 595, 855
BstF5I GGATG 1 cut(s) 569
BstKTI GATC 5 cut(s) 223, 250, 316, 400, 601
BstMAI GTCTC 4 cut(s) 20, 91, 338, 429
BstMBI GATC 5 cut(s) 220, 247, 313, 397, 598
BstMWI GCNNNNNNNGC 3 cut(s) 89, 514, 809
BstNI CCWGG 1 cut(s) 465
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 2 cut(s) 463, 722
BstV1I GCAGC 1 cut(s) 603
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 3 cut(s) 83, 508, 850
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 569
BtsIMutI CAGTG 6 cut(s) 243, 321, 327, 537, 684, 693
Cac8I GCNNGC 3 cut(s) 382, 810, 852
CciI TCATGA 2 cut(s) 667, 759
Cfr13I GGNCC 1 cut(s) 506
CviAII CATG 6 cut(s) 302, 308, 317, 439, 668, 760
DdeI CTNAG 3 cut(s) 11, 595, 855
DpnI GATC 5 cut(s) 222, 249, 315, 399, 600
DpnII GATC 5 cut(s) 220, 247, 313, 397, 598
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 3 cut(s) 49, 137, 149
EarI CTCTTC 3 cut(s) 49, 137, 149
Eco147I AGGCCT 1 cut(s) 850
Eco31I GGTCTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 463
EcoRV GATATC 1 cut(s) 757
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 6 cut(s) 305, 311, 320, 442, 671, 763
FalI AAGNNNNNCTT 4 cut(s) 116, 148, 517, 549
FaqI GGGAC 1 cut(s) 175
FatI CATG 6 cut(s) 301, 307, 316, 438, 667, 759
FauI CCCGC 1 cut(s) 214
FbaI TGATCA 2 cut(s) 313, 397
Fnu4HI GCNGC 1 cut(s) 592
FokI GGATG 1 cut(s) 576
Fsp4HI GCNGC 1 cut(s) 592
FspBI CTAG 1 cut(s) 871
GluI GCNGC 1 cut(s) 592
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 3 cut(s) 83, 508, 850
HapII CCGG 1 cut(s) 724
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 6 cut(s) 305, 311, 320, 442, 671, 763
HindIII AAGCTT 2 cut(s) 125, 347
HinfI GANTC 5 cut(s) 9, 155, 611, 681, 857
HpaII CCGG 1 cut(s) 724
HphI GGTGA 3 cut(s) 428, 478, 512
Hpy166II GTNNAC 2 cut(s) 75, 229
Hpy188I TCNGA 3 cut(s) 405, 598, 844
Hpy188III TCNNGA 4 cut(s) 148, 340, 668, 760
Hpy8I GTNNAC 2 cut(s) 75, 229
Hpy99I CGWCG 3 cut(s) 106, 109, 188
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 3 cut(s) 238, 688, 697
HpyCH4IV ACGT 4 cut(s) 104, 186, 473, 559
HpyCH4V TGCA 2 cut(s) 812, 832
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 514, 809
HpyF3I CTNAG 3 cut(s) 11, 595, 855
HpySE526I ACGT 4 cut(s) 104, 186, 473, 559
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 6 cut(s) 305, 311, 320, 442, 671, 763
Ksp22I TGATCA 2 cut(s) 313, 397
Kzo9I GATC 5 cut(s) 220, 247, 313, 397, 598
LguI GCTCTTC 1 cut(s) 149
Lsp1109I GCAGC 1 cut(s) 603
LweI GCATC 2 cut(s) 535, 699
MaeI CTAG 1 cut(s) 871
MaeII ACGT 4 cut(s) 104, 186, 473, 559
MaeIII GTNAC 4 cut(s) 108, 319, 484, 493
MalI GATC 5 cut(s) 222, 249, 315, 399, 600
MboI GATC 5 cut(s) 220, 247, 313, 397, 598
MboII GAAGA 4 cut(s) 36, 124, 136, 764
MflI RGATCY 1 cut(s) 247
MlyI GAGTC 4 cut(s) 3, 164, 620, 866
MseI TTAA 2 cut(s) 261, 653
MslI CAYNNNNRTG 2 cut(s) 306, 803
MspI CCGG 1 cut(s) 724
MspR9I CCNGG 2 cut(s) 465, 724
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 3 cut(s) 89, 514, 809
NciI CCSGG 1 cut(s) 724
NdeII GATC 5 cut(s) 220, 247, 313, 397, 598
NlaIII CATG 6 cut(s) 305, 311, 320, 442, 671, 763
NmuCI GTSAC 3 cut(s) 108, 319, 484
NspI RCATGY 1 cut(s) 442
PagI TCATGA 2 cut(s) 667, 759
PceI AGGCCT 1 cut(s) 850
PciI ACATGT 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 681
PflFI GACNNNGTC 2 cut(s) 12, 106
PkrI GCNGC 1 cut(s) 593
PleI GAGTC 4 cut(s) 3, 163, 619, 865
PpsI GAGTC 4 cut(s) 3, 163, 619, 865
Ppu21I YACGTR 1 cut(s) 560
PscI ACATGT 1 cut(s) 438
PshBI ATTAAT 1 cut(s) 653
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspPI GGNCC 1 cut(s) 506
PsuI RGATCY 1 cut(s) 247
PsyI GACNNNGTC 2 cut(s) 12, 106
RseI CAYNNNNRTG 2 cut(s) 306, 803
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 261, 653
SatI GCNGC 1 cut(s) 592
Sau3AI GATC 5 cut(s) 220, 247, 313, 397, 598
Sau96I GGNCC 1 cut(s) 506
SchI GAGTC 4 cut(s) 3, 164, 620, 866
ScrFI CCNGG 2 cut(s) 465, 724
SfaNI GCATC 2 cut(s) 535, 699
SmiMI CAYNNNNRTG 2 cut(s) 306, 803
SseBI AGGCCT 1 cut(s) 850
SsiI CCGC 1 cut(s) 207
SspMI CTAG 1 cut(s) 871
StuI AGGCCT 1 cut(s) 850
StyD4I CCNGG 2 cut(s) 463, 722
TaaI ACNGT 3 cut(s) 238, 688, 697
TaiI ACGT 4 cut(s) 107, 189, 476, 562
TaqI TCGA 3 cut(s) 7, 147, 454
TfiI GAWTC 1 cut(s) 681
Tru1I TTAA 2 cut(s) 261, 653
Tru9I TTAA 2 cut(s) 261, 653
TscAI CASTG 6 cut(s) 243, 328, 334, 544, 691, 700
TseFI GTSAC 3 cut(s) 108, 319, 484
TseI GCWGC 1 cut(s) 591
Tsp45I GTSAC 3 cut(s) 108, 319, 484
TspDTI ATGAA 4 cut(s) 17, 296, 308, 776
TspGWI ACGGA 2 cut(s) 125, 850
TspRI CASTG 6 cut(s) 243, 328, 334, 544, 691, 700
Tth111I GACNNNGTC 2 cut(s) 12, 106
VspI ATTAAT 1 cut(s) 653
XceI RCATGY 1 cut(s) 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 871
ZraI GACGTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.