Rorug02G0430500

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
55238331 .. 55241969
3639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0430500.1

Sequence Viewer

Length: 1140 bp
ATGAGTAGCAACAAAGATAACTTCGACATGTCCGACCTCGGCACCTCCCTTCCGGCCGCCGCCGCCGCTCTTAGTGCGGAGGATCGCGCTGGTCTTGTTAATGCGCTCAAGGATAAGCTTCAGAGCTTGGCTGGACAGCATTCCGACATATTGGAAACTTTGTCACCAACGGTCAGGAAACGTGTTGATGTATTGAGAGAGATGCAGAGCCAACATGATGAGTTGGAAAAGAAGTTTTTTGAAGAAAGGGCTGCATTGGAAGCAAAATACCAGAAGCTCTATGAACCTCTCTACACAAAGAGATACGAAATTGTCAACGGTGTAACCGAAGTTGAAGGAGTGAAAAATGAATCTGCAGTGGACCAAGGAGATGATGCCACTGAAGAGAAAGGAGTGCCTGACTTCTGGCTTACAGCAATGAAGACCAATGAAGTTCTTTCTGAGGAGATTTCAGAGCGTGATGAAGGGGCTCTGAAGTACCTCAAGGATATCAAGTGGTATAGGATAGAAGAACCGAAAGGATTCAAGCTTGAGTTTTTCTTCAATGCCAATCCTTATTTCAAAAATTCTGTCCTGACAAAAACGTATCACATGATTGATGACGATGAACCTATTTTGGAGAAGGCAATTGGGACGGAGATTGAATGGTATCCTGGGAAAAGCTTGACACAGAAGATCTTGAAGAAGAAGCCAAGAAAGGGATCAAAAAATTCTAAACCCATAACCAAAACTGAAGATTGTGAAAGCTTCTTTAACTTCTTCAACCCTCCTGAGATCCCTGATACTGATGATGGATTTGATGAGGAAACTGCTGAAGAACTTCAAGGTCAGATGGAGCAGGATTATGACATTGGTTCAACAATAAGAGACAAAATCATTCCCCATGCGGTGTCATGGTTTACTGGGGAGGCTGTTAAGGATGAATTTGAAGATATAGAAGATGATGATGATGATGTAGATGAGAATGAAGACGAAGACGAGGAGGAAGATGAAGAAGACGATGAGGATGATGATGATGATGATGACGATGAGGAAGAGGAAGAGAAAGGAAGGAAAAAGCCATCTGCTGGAGCTAAGAAAAGTGGTAAGGCACAAGGAGCAGAAGGTGGCGAGCGTCCTCCAGAGTGCAAGCAGCAGTAG

Protein Analysis

379

Amino Acids

43.17

Weight (kDa)

4.33

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 60 - 303 3e-87 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccB7I CCANNNNNTGG 1 cut(s) 1067
AccBSI CCGCTC 1 cut(s) 68
AccII CGCG 1 cut(s) 87
AciI CCGC 6 cut(s) 57, 60, 63, 66, 77, 887
AclWI GGATC 3 cut(s) 90, 709, 769
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 3 cut(s) 565, 709, 923
AcuI CTGAAG 5 cut(s) 104, 402, 494, 753, 834
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 2 cut(s) 698, 1067
AflIII ACRYGT 2 cut(s) 27, 181
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AluBI AGCT 7 cut(s) 118, 126, 277, 529, 663, 747, 1073
AluI AGCT 7 cut(s) 118, 126, 277, 529, 663, 747, 1073
Alw26I GTCTC 1 cut(s) 861
AlwI GGATC 3 cut(s) 90, 709, 769
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 251, 1132
ApoI RAATTY 3 cut(s) 565, 709, 923
ArsI GACNNNNNNTTYG 2 cut(s) 555, 587
Asp700I GAANNNNTTC 2 cut(s) 521, 819
AspLEI GCGC 2 cut(s) 89, 106
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 156
AvaII GGWCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 472
BbsI GAAGAC 4 cut(s) 428, 975, 981, 1002
BbvI GCAGC 1 cut(s) 238
BccI CCATC 3 cut(s) 785, 826, 1069
BciT130I CCWGG 1 cut(s) 654
BciVI GTATCC 1 cut(s) 660
BcoDI GTCTC 1 cut(s) 861
BfmI CTRYAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 660
BglII AGATCT 1 cut(s) 675
BisI GCNGC 6 cut(s) 57, 60, 63, 66, 252, 1133
BlsI GCNGC 6 cut(s) 58, 61, 64, 67, 253, 1134
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 654
BmrI ACTGGG 1 cut(s) 912
BmsI GCATC 2 cut(s) 192, 364
BmuI ACTGGG 1 cut(s) 912
BpiI GAAGAC 4 cut(s) 428, 975, 981, 1002
BpmI CTGGAG 2 cut(s) 1089, 1104
BpuEI CTTGAG 3 cut(s) 92, 467, 551
BsaJI CCNNGG 3 cut(s) 37, 364, 653
Bsc4I CCNNNNNNNGG 2 cut(s) 698, 1067
Bse1I ACTGG 1 cut(s) 907
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 3 cut(s) 37, 364, 653
BseGI GGATG 2 cut(s) 925, 1012
BseLI CCNNNNNNNGG 2 cut(s) 698, 1067
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 2 cut(s) 432, 762
BseNI ACTGG 1 cut(s) 907
BseRI GAGGAG 2 cut(s) 458, 995
BseX3I CGGCCG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 56
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 2 cut(s) 698, 1067
BsmAI GTCTC 1 cut(s) 861
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 4 cut(s) 82, 675, 701, 774
BspACI CCGC 6 cut(s) 57, 60, 63, 66, 77, 887
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 433, 763
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 3 cut(s) 90, 709, 769
BspT107I GGYRCC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 423
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 3 cut(s) 37, 364, 653
BssMI GATC 4 cut(s) 82, 675, 701, 774
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 2 cut(s) 172, 320
Bst6I CTCTTC 3 cut(s) 378, 1029, 1035
BstC8I GCNNGC 2 cut(s) 1112, 1130
BstDEI CTNAG 4 cut(s) 71, 441, 771, 1074
BstF5I GGATG 2 cut(s) 925, 1012
BstFNI CGCG 1 cut(s) 87
BstHHI GCGC 2 cut(s) 89, 106
BstKTI GATC 4 cut(s) 85, 678, 704, 777
BstMAI GTCTC 1 cut(s) 861
BstMBI GATC 4 cut(s) 82, 675, 701, 774
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 5 cut(s) 62, 65, 74, 260, 1097
BstNI CCWGG 1 cut(s) 654
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 4 cut(s) 428, 975, 981, 1002
BstX2I RGATCY 2 cut(s) 675, 774
BstYI RGATCY 2 cut(s) 675, 774
BstZI CGGCCG 1 cut(s) 54
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 2 cut(s) 925, 1012
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 363, 378
Cac8I GCNNGC 2 cut(s) 1112, 1130
CfoI GCGC 2 cut(s) 89, 106
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 1 cut(s) 1103
Csp6I GTAC 1 cut(s) 478
CviAII CATG 5 cut(s) 28, 215, 592, 884, 894
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 4 cut(s) 71, 441, 771, 1074
DpnI GATC 4 cut(s) 84, 677, 703, 776
DpnII GATC 4 cut(s) 82, 675, 701, 774
EaeI YGGCCR 1 cut(s) 54
EagI CGGCCG 1 cut(s) 54
Eam1104I CTCTTC 3 cut(s) 378, 1029, 1035
EarI CTCTTC 3 cut(s) 378, 1029, 1035
EclXI CGGCCG 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 472
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 361
Eco52I CGGCCG 1 cut(s) 54
Eco57I CTGAAG 5 cut(s) 104, 402, 494, 753, 834
EcoRII CCWGG 1 cut(s) 652
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 5 cut(s) 31, 218, 595, 887, 897
FaqI GGGAC 1 cut(s) 646
FatI CATG 5 cut(s) 27, 214, 591, 883, 893
Fnu4HI GCNGC 6 cut(s) 57, 60, 63, 66, 252, 1133
FokI GGATG 2 cut(s) 932, 1019
FriOI GRGCYC 1 cut(s) 472
Fsp4HI GCNGC 6 cut(s) 57, 60, 63, 66, 252, 1133
GlaI GCGC 2 cut(s) 88, 105
GluI GCNGC 6 cut(s) 57, 60, 63, 66, 252, 1133
GsuI CTGGAG 2 cut(s) 1089, 1104
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 1103
HhaI GCGC 2 cut(s) 89, 106
Hin1II CATG 5 cut(s) 31, 218, 595, 887, 897
Hin6I GCGC 2 cut(s) 87, 104
HinP1I GCGC 2 cut(s) 87, 104
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 4 cut(s) 116, 527, 661, 745
HinfI GANTC 2 cut(s) 350, 522
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 156
Hpy166II GTNNAC 3 cut(s) 316, 361, 900
Hpy188I TCNGA 7 cut(s) 34, 123, 145, 442, 454, 474, 831
Hpy188III TCNNGA 5 cut(s) 175, 574, 679, 770, 1121
Hpy8I GTNNAC 3 cut(s) 316, 361, 900
HpyAV CCTTC 6 cut(s) 59, 329, 458, 616, 1044, 1097
HpyCH4III ACNGT 2 cut(s) 172, 320
HpyCH4IV ACGT 2 cut(s) 181, 584
HpyCH4V TGCA 4 cut(s) 205, 254, 356, 1128
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 65, 74, 260, 1097
HpyF3I CTNAG 4 cut(s) 71, 441, 771, 1074
HpySE526I ACGT 2 cut(s) 181, 584
Hsp92II CATG 5 cut(s) 31, 218, 595, 887, 897
HspAI GCGC 2 cut(s) 87, 104
Kzo9I GATC 4 cut(s) 82, 675, 701, 774
LmnI GCTCC 3 cut(s) 835, 1070, 1097
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 192, 364
MaeII ACGT 2 cut(s) 181, 584
MaeIII GTNAC 2 cut(s) 162, 322
MalI GATC 4 cut(s) 84, 677, 703, 776
MbiI CCGCTC 1 cut(s) 68
MboI GATC 4 cut(s) 82, 675, 701, 774
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 2 cut(s) 675, 774
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 5 cut(s) 309, 565, 627, 709, 923
MmeI TCCRAC 3 cut(s) 57, 168, 204
MroXI GAANNNNTTC 2 cut(s) 521, 819
MseI TTAA 3 cut(s) 99, 753, 915
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 654
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 654
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 5 cut(s) 62, 65, 74, 260, 1097
NdeII GATC 4 cut(s) 82, 675, 701, 774
NlaIII CATG 5 cut(s) 31, 218, 595, 887, 897
NlaIV GGNNCC 1 cut(s) 43
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 162
NspI RCATGY 1 cut(s) 31
PciI ACATGT 1 cut(s) 27
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 324
PctI GAATGC 1 cut(s) 139
PdmI GAANNNNTTC 2 cut(s) 521, 819
PfeI GAWTC 2 cut(s) 350, 522
PflMI CCANNNNNTGG 1 cut(s) 1067
PkrI GCNGC 6 cut(s) 58, 61, 64, 67, 253, 1134
PscI ACATGT 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 2 cut(s) 675, 774
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SaqAI TTAA 3 cut(s) 99, 753, 915
SatI GCNGC 6 cut(s) 57, 60, 63, 66, 252, 1133
Sau3AI GATC 4 cut(s) 82, 675, 701, 774
Sau96I GGNCC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 1 cut(s) 472
SfaNI GCATC 2 cut(s) 192, 364
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 361
SmlI CTYRAG 3 cut(s) 107, 482, 530
SmoI CTYRAG 3 cut(s) 107, 482, 530
Sse9I AATT 5 cut(s) 309, 565, 627, 709, 923
SsiI CCGC 6 cut(s) 57, 60, 63, 66, 77, 887
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 2 cut(s) 172, 320
TaiI ACGT 2 cut(s) 184, 587
TaqI TCGA 1 cut(s) 24
TasI AATT 5 cut(s) 309, 565, 627, 709, 923
TauI GCSGC 4 cut(s) 59, 62, 65, 68
TfiI GAWTC 2 cut(s) 350, 522
Tru1I TTAA 3 cut(s) 99, 753, 915
Tru9I TTAA 3 cut(s) 99, 753, 915
TscAI CASTG 2 cut(s) 363, 385
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 2 cut(s) 251, 1132
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 9 cut(s) 297, 363, 434, 444, 477, 621, 936, 981, 1005
TspGWI ACGGA 1 cut(s) 650
TspRI CASTG 2 cut(s) 363, 385
Van91I CCANNNNNTGG 1 cut(s) 1067
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 3 cut(s) 565, 709, 923
XceI RCATGY 1 cut(s) 31
XmnI GAANNNNTTC 2 cut(s) 521, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.