Rmu_sc0002516.1_g000015

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002516.1
Physical Location & Seq
Reverse (-)
81062 .. 83547
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002516.1_g000015.1.cds

Sequence Viewer

Length: 1062 bp
atgtcttcttgtaacatctccaggatgctgcttctttctttattcatcacctctcttctagccatcactgcctcagctggtaatttttttcaagactttgacattacatttggcgatcaacgcgctaagatactcgaaggaggacagtttctcactctcaacctcgacaagtattctgggtctggtttcaaatccaagaacgagtacttattcggaaggatcgacatgcaaatcaagctcgtgcctggtaactcggctggcactgtcactacatactatttatcctctgaaggtccaactcatgatgaaatcgacttcgagtttttgggcaactcatctggagatccctacactctccacaccaatgtgttcagtcagggcaaaggggacagagaacaacaattccatctttggtttgatcccacaacggccttccacacctactcatttgtctggaactcccaacgcattatattctttgtcgacaacattccaatccgagtgttcaacaacatggaatcatttggtgttccattccctaaaaaccagccaatgaggatttactcgagtctgtggaatgccgacgactgggctacacaaggcgggcgtgtgaagactgactggacgcaagctcctttcactgcttcgtatcgaaacttcaaggccaatgcttgtgttgctggatcctcctcctcctcctgcggtgtcgccaccgttgcatcgactgataagacacagcagagtgcatggcagactcaaacgcttgatgctgcagggcgaaataggcttcgatgggtgcaacaaaagttcatggtgtacaactactgctctgacctcaaaagattcccccaaggccttccggtcgaatgcaagcgatcaagggcggtcgtggagagagagccggaaggattgagccgacggagagaatttggcgaggctcacgtgcgggggagagccgacgtgtgtgaagaaacctccggcggagggggtggagaagctggaagtggagaaggcgaagccggtggaggagaagtgggaggtgtagaaccttccggagagtga

Protein Analysis

353

Amino Acids

38.99

Weight (kDa)

5.67

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 123
AccIII TCCGGA 1 cut(s) 1052
AciI CCGC 5 cut(s) 603, 702, 884, 946, 981
AclWI GGATC 5 cut(s) 227, 338, 413, 678, 691
AcsI RAATTY 1 cut(s) 926
AcuI CTGAAG 1 cut(s) 309
AcvI CACGTG 1 cut(s) 943
AfaI GTAC 2 cut(s) 206, 818
AfiI CCNNNNNNNGG 2 cut(s) 588, 984
AflIII ACRYGT 1 cut(s) 960
AgsI TTSAA 4 cut(s) 92, 190, 508, 661
AjiI CACGTC 1 cut(s) 961
AjnI CCWGG 2 cut(s) 20, 244
AleI CACNNNNGTG 1 cut(s) 365
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 4 cut(s) 77, 238, 632, 998
AluI AGCT 4 cut(s) 77, 238, 632, 998
AlwI GGATC 5 cut(s) 227, 338, 413, 678, 691
Ama87I CYCGRG 1 cut(s) 565
Aor13HI TCCGGA 1 cut(s) 1052
AoxI GGCC 3 cut(s) 429, 663, 853
ApeKI GCWGC 2 cut(s) 28, 770
ApoI RAATTY 1 cut(s) 926
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 565
AvaII GGWCC 1 cut(s) 293
BamHI GGATCC 1 cut(s) 683
BarI GAAGNNNNNNTAC 2 cut(s) 641, 673
BauI CACGAG 1 cut(s) 239
BbrPI CACGTG 1 cut(s) 943
BbsI GAAGAC 1 cut(s) 620
BbvCI CCTCAGC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 15, 757
BccI CCATC 3 cut(s) 71, 414, 786
BceAI ACGGC 1 cut(s) 444
BciT130I CCWGG 2 cut(s) 22, 246
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 771
BisI GCNGC 2 cut(s) 29, 771
BlsI GCNGC 2 cut(s) 30, 772
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 2 cut(s) 22, 246
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 565
BmgBI CACGTC 1 cut(s) 961
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 685
BmrFI CCNGG 2 cut(s) 22, 246
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 3 cut(s) 15, 728, 757
BmuI ACTGGG 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 620
BpmI CTGGAG 2 cut(s) 4, 360
Bpu10I CCTNAGC 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 943
BsaJI CCNNGG 1 cut(s) 850
BsaWI WCCGGW 2 cut(s) 859, 1052
BsaXI ACNNNNNCTCC 4 cut(s) 616, 646, 1017, 1047
Bsc4I CCNNNNNNNGG 2 cut(s) 588, 984
Bse118I RCCGGY 1 cut(s) 1019
Bse1I ACTGG 2 cut(s) 593, 626
BseAI TCCGGA 1 cut(s) 1052
BseBI CCWGG 2 cut(s) 22, 246
BseDI CCNNGG 1 cut(s) 850
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 2 cut(s) 588, 984
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 593, 626
BseRI GAGGAG 4 cut(s) 679, 682, 685, 1041
BseXI GCAGC 2 cut(s) 15, 757
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 2 cut(s) 864, 888
BshFI GGCC 3 cut(s) 431, 665, 855
BsiEI CGRYCG 2 cut(s) 864, 888
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 5 cut(s) 860, 902, 978, 1020, 1053
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 588, 984
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 2 cut(s) 583, 872
BsnI GGCC 3 cut(s) 431, 665, 855
BsoBI CYCGRG 1 cut(s) 565
Bsp13I TCCGGA 1 cut(s) 1052
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 6 cut(s) 115, 219, 343, 418, 683, 875
BspACI CCGC 5 cut(s) 603, 702, 884, 946, 981
BspANI GGCC 3 cut(s) 431, 665, 855
BspCNI CTCAG 1 cut(s) 86
BspEI TCCGGA 1 cut(s) 1052
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 685
BspMAI CTGCAG 1 cut(s) 775
BspPI GGATC 5 cut(s) 227, 338, 413, 678, 691
BsrFI RCCGGY 1 cut(s) 1019
BsrGI TGTACA 1 cut(s) 816
BsrI ACTGG 2 cut(s) 593, 626
BssAI RCCGGY 1 cut(s) 1019
BssECI CCNNGG 1 cut(s) 850
BssMI GATC 6 cut(s) 115, 219, 343, 418, 683, 875
BssSI CACGAG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 850
Bst2BI CACGAG 1 cut(s) 239
Bst2UI CCWGG 2 cut(s) 22, 246
Bst4CI ACNGT 3 cut(s) 147, 265, 715
Bst6I CTCTTC 1 cut(s) 60
BstAUI TGTACA 1 cut(s) 816
BstBAI YACGTR 1 cut(s) 943
BstC8I GCNNGC 4 cut(s) 259, 605, 630, 872
BstDEI CTNAG 2 cut(s) 73, 126
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 6 cut(s) 118, 222, 346, 421, 686, 878
BstMBI GATC 6 cut(s) 115, 219, 343, 418, 683, 875
BstMCI CGRYCG 2 cut(s) 864, 888
BstMWI GCNNNNNNNGC 6 cut(s) 68, 120, 235, 677, 716, 784
BstNI CCWGG 2 cut(s) 22, 246
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 20, 244
BstSFI CTRYAG 1 cut(s) 771
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 15, 757
BstV2I GAAGAC 1 cut(s) 620
BstX2I RGATCY 2 cut(s) 343, 683
BstYI RGATCY 2 cut(s) 343, 683
BsuRI GGCC 3 cut(s) 431, 665, 855
BtrI CACGTC 1 cut(s) 961
BtsCI GGATG 1 cut(s) 30
BtsI GCAGTG 2 cut(s) 66, 639
BtsIMutI CAGTG 3 cut(s) 66, 261, 639
Cac8I GCNNGC 4 cut(s) 259, 605, 630, 872
CciI TCATGA 1 cut(s) 301
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 1019
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 634
Csp6I GTAC 2 cut(s) 205, 817
CviAII CATG 5 cut(s) 226, 302, 514, 747, 811
CviQI GTAC 2 cut(s) 205, 817
DdeI CTNAG 2 cut(s) 73, 126
DpnI GATC 6 cut(s) 117, 221, 345, 420, 685, 877
DpnII GATC 6 cut(s) 115, 219, 343, 418, 683, 875
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EciI GGCGGA 1 cut(s) 996
Eco130I CCWWGG 1 cut(s) 850
Eco147I AGGCCT 1 cut(s) 855
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 309
Eco72I CACGTG 1 cut(s) 943
Eco88I CYCGRG 1 cut(s) 565
EcoRII CCWGG 2 cut(s) 20, 244
EcoT14I CCWWGG 1 cut(s) 850
ErhI CCWWGG 1 cut(s) 850
FaeI CATG 5 cut(s) 229, 305, 517, 750, 814
FaiI YATR 7 cut(s) 227, 274, 303, 473, 515, 748, 812
FaqI GGGAC 1 cut(s) 401
FatI CATG 5 cut(s) 225, 301, 513, 746, 810
FauI CCCGC 2 cut(s) 596, 939
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 2 cut(s) 29, 771
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 29, 771
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 124
GluI GCNGC 2 cut(s) 29, 771
GsuI CTGGAG 2 cut(s) 4, 360
HaeIII GGCC 3 cut(s) 431, 665, 855
HapII CCGG 5 cut(s) 860, 902, 978, 1020, 1053
HgaI GACGC 1 cut(s) 634
HhaI GCGC 1 cut(s) 125
Hin1II CATG 5 cut(s) 229, 305, 517, 750, 814
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 4 cut(s) 518, 568, 754, 843
HpaII CCGG 5 cut(s) 860, 902, 978, 1020, 1053
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 484, 817
Hpy188I TCNGA 4 cut(s) 215, 289, 500, 832
Hpy188III TCNNGA 5 cut(s) 92, 302, 339, 454, 1053
Hpy8I GTNNAC 2 cut(s) 484, 817
Hpy99I CGWCG 3 cut(s) 587, 921, 962
HpyAV CCTTC 8 cut(s) 131, 210, 284, 442, 866, 899, 1004, 1059
HpyCH4III ACNGT 3 cut(s) 147, 265, 715
HpyCH4IV ACGT 2 cut(s) 942, 960
HpyCH4V TGCA 6 cut(s) 229, 719, 746, 773, 799, 870
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 120, 235, 677, 716, 784
HpyF3I CTNAG 2 cut(s) 73, 126
HpySE526I ACGT 2 cut(s) 942, 960
Hsp92II CATG 5 cut(s) 229, 305, 517, 750, 814
HspAI GCGC 1 cut(s) 123
Kpn2I TCCGGA 1 cut(s) 1052
Kzo9I GATC 6 cut(s) 115, 219, 343, 418, 683, 875
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 2 cut(s) 15, 757
LweI GCATC 3 cut(s) 15, 728, 757
MaeI CTAG 1 cut(s) 59
MaeII ACGT 2 cut(s) 942, 960
MaeIII GTNAC 3 cut(s) 11, 248, 265
MalI GATC 6 cut(s) 117, 221, 345, 420, 685, 877
MboI GATC 6 cut(s) 115, 219, 343, 418, 683, 875
MboII GAAGA 3 cut(s) 47, 625, 980
MflI RGATCY 2 cut(s) 343, 683
MluCI AATT 3 cut(s) 82, 401, 926
MlyI GAGTC 2 cut(s) 577, 748
MmeI TCCRAC 1 cut(s) 320
MroI TCCGGA 1 cut(s) 1052
MslI CAYNNNNRTG 2 cut(s) 363, 365
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 5 cut(s) 860, 902, 978, 1020, 1053
MspR9I CCNGG 2 cut(s) 22, 246
Mva1269I GAATGC 2 cut(s) 583, 872
MvaI CCWGG 2 cut(s) 22, 246
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 6 cut(s) 68, 120, 235, 677, 716, 784
NdeII GATC 6 cut(s) 115, 219, 343, 418, 683, 875
NlaIII CATG 5 cut(s) 229, 305, 517, 750, 814
NlaIV GGNNCC 1 cut(s) 685
NmeAIII GCCGAG 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 229
OliI CACNNNNGTG 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 565
PagI TCATGA 1 cut(s) 301
PceI AGGCCT 1 cut(s) 855
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 2 cut(s) 583, 872
PfeI GAWTC 2 cut(s) 518, 843
PfoI TCCNGGA 1 cut(s) 20
PkrI GCNGC 2 cut(s) 30, 772
PleI GAGTC 2 cut(s) 576, 748
PmaCI CACGTG 1 cut(s) 943
PmlI CACGTG 1 cut(s) 943
PpsI GAGTC 2 cut(s) 576, 748
Ppu21I YACGTR 1 cut(s) 943
Psp6I CCWGG 2 cut(s) 20, 244
PspCI CACGTG 1 cut(s) 943
PspGI CCWGG 2 cut(s) 20, 244
PspN4I GGNNCC 1 cut(s) 685
PspPI GGNCC 1 cut(s) 293
PspXI VCTCGAGB 1 cut(s) 565
PstI CTGCAG 1 cut(s) 775
PsuI RGATCY 2 cut(s) 343, 683
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 2 cut(s) 206, 818
RsaNI GTAC 2 cut(s) 205, 817
RseI CAYNNNNRTG 2 cut(s) 363, 365
SalI GTCGAC 1 cut(s) 482
SatI GCNGC 2 cut(s) 29, 771
Sau3AI GATC 6 cut(s) 115, 219, 343, 418, 683, 875
Sau96I GGNCC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 2 cut(s) 577, 748
ScrFI CCNGG 2 cut(s) 22, 246
SfaNI GCATC 3 cut(s) 15, 728, 757
SfcI CTRYAG 1 cut(s) 771
Sfr274I CTCGAG 1 cut(s) 565
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 565
SmiMI CAYNNNNRTG 2 cut(s) 363, 365
SmlI CTYRAG 1 cut(s) 565
SmoI CTYRAG 1 cut(s) 565
Sse9I AATT 3 cut(s) 82, 401, 926
SseBI AGGCCT 1 cut(s) 855
SsiI CCGC 5 cut(s) 603, 702, 884, 946, 981
SspMI CTAG 1 cut(s) 59
StuI AGGCCT 1 cut(s) 855
StyD4I CCNGG 2 cut(s) 20, 244
StyI CCWWGG 1 cut(s) 850
TaaI ACNGT 3 cut(s) 147, 265, 715
TaiI ACGT 2 cut(s) 945, 963
TasI AATT 3 cut(s) 82, 401, 926
TatI WGTACW 2 cut(s) 204, 816
TfiI GAWTC 2 cut(s) 518, 843
TscAI CASTG 3 cut(s) 73, 268, 646
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 28, 770
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 3 cut(s) 34, 321, 799
TspGWI ACGGA 1 cut(s) 934
TspRI CASTG 3 cut(s) 73, 268, 646
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 926
XceI RCATGY 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 1 cut(s) 59
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.