RchiOBHm_Chr4g0412651

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000406
Physical Location & Seq
Forward (+)
36577844 .. 36580108
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38330

Sequence Viewer

Length: 1071 bp
ATGCTCAAACAAAAGTTTCCAGCTTGCATCTTTGTGCTTAGCTGGCTTCTGCTTTGGCTCCTCCAGTTGTTCATTGCTCACAAGCCCCCACCCTACCCATTACTTCTTTCTATTCCCCCTTCCTATATAAACCCACCTCTTTCTAAAACCCTATCACCCTCACAACAATCTCAAACTCCCTCTTCCTCTTCCTCTTTTTCTTTCTCTGTCTCCTGTTTCAAAAAGATGGGGATTTCTGGTAACGTGTCTTGTTTGGTTTTGTTGGTTGGTTTAGCATTGAGCTCTTTAATAGTAGGCTCTTATGCTGGCAACTTCTATCAAGACTTTGACTTGACATGGGGTGGTCACCGTCCTAAGATATTCAAGGGAGGTCAGCTTCTTTCTTTGTCTTTGGACAAGGTTTCTGGCTCTGGATTCCAGTCCAAGAAAGAGTACCTGTTCGGGAGGATTGACATGCAACTTAAGCTTGTTGCCGGAAACTCTGCCGGCACTGTGACTGCCTACTACTTGTCTTCTCAAGGCCCTGCACATGATGAAATCGACTTTGAATTCTTGGGAAATGTCAGTGGAGATCCATATGTGTTGCATACCAATATTTTCACTCAGGGCAAGGGAAACAGAGAGCAGCAATTCTATCTCTGGTTTGACCCCTCAAAAAACTTCCACACTTACTCCATCATCTGGAAGCCCCAGCACATAATTTTCTTGGTGGACAATACTCCCATTAGAGTGTTCAAAAATGCTGAATCACTGGGTGTTCCATTCCCAAAGAACCAAGCCATGAGAATTTACTCGAGCCTTTGGAATGCTGATGATTGGGCTACCAGAGGAGGATTGGTGAAAACTGATTGGTCAAAGGCACCCTTTACAGCATACTACAGAAACTTCAACGTCATCGATGCTAAATCATCCAAATCATTCTCTGATTCTCAGCCTAGTTGGCAGACCAATGCACTTGATGCTCCTAGCCGAAGACGCCTGAGATGGGTTCAGAAGTACTTCATGATCTACAACTACTGCACCGATTTAAAACGCTTCCCACGAGGTTTTCCTGCTGAGTGTAGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

356

Amino Acids

40.33

Weight (kDa)

9.54

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 106 - 286 3.6e-66 Glycosyl hydrolases family 16
XET_C PF06955 310 - 354 5.2e-18 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 859
AccB7I CCANNNNNTGG 1 cut(s) 681
AclWI GGATC 1 cut(s) 566
AcsI RAATTY 2 cut(s) 548, 786
AcyI GRCGYC 1 cut(s) 976
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 2 cut(s) 434, 998
AfiI CCNNNNNNNGG 2 cut(s) 681, 985
AflII CTTAAG 1 cut(s) 461
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 5 cut(s) 220, 364, 548, 736, 889
AluBI AGCT 5 cut(s) 23, 42, 282, 376, 466
AluI AGCT 5 cut(s) 23, 42, 282, 376, 466
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 793
AoxI GGCC 1 cut(s) 520
ApeKI GCWGC 1 cut(s) 625
ApoI RAATTY 2 cut(s) 548, 786
Asp700I GAANNNNTTC 1 cut(s) 998
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 3 cut(s) 147, 338, 850
AvaI CYCGRG 1 cut(s) 793
BanI GGYRCC 1 cut(s) 859
BanII GRGCYC 1 cut(s) 284
BauI CACGAG 1 cut(s) 1041
BbsI GAAGAC 2 cut(s) 504, 979
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 637
BccI CCATC 3 cut(s) 220, 683, 978
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 2 cut(s) 936, 966
BfmI CTRYAG 1 cut(s) 877
BfrI CTTAAG 1 cut(s) 461
BglI GCCNNNNNGGC 1 cut(s) 940
BisI GCNGC 1 cut(s) 626
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 627
BmcAI AGTACT 1 cut(s) 998
BmeT110I CYCGRG 1 cut(s) 793
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 2 cut(s) 59, 861
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 3 cut(s) 36, 889, 949
BmuI ACTGGG 1 cut(s) 761
BpiI GAAGAC 2 cut(s) 504, 979
BpmI CTGGAG 1 cut(s) 47
Bpu1102I GCTNAGC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 501
Bsa29I ATCGAT 1 cut(s) 897
BsaHI GRCGYC 1 cut(s) 976
BsaXI ACNNNNNCTCC 4 cut(s) 656, 686, 822, 852
Bsc4I CCNNNNNNNGG 2 cut(s) 681, 985
Bse118I RCCGGY 1 cut(s) 485
Bse1I ACTGG 3 cut(s) 64, 418, 756
Bse3DI GCAATG 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 897
BseGI GGATG 1 cut(s) 908
BseLI CCNNNNNNNGG 2 cut(s) 681, 985
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 4 cut(s) 617, 944, 971, 1047
BseNI ACTGG 3 cut(s) 64, 418, 756
BseRI GAGGAG 2 cut(s) 50, 843
BseXI GCAGC 1 cut(s) 637
BseYI CCCAGC 1 cut(s) 690
BsgI GTGCAG 2 cut(s) 510, 1003
BshFI GGCC 1 cut(s) 522
BshNI GGYRCC 1 cut(s) 859
BshVI ATCGAT 1 cut(s) 897
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 793
BsiSI CCGG 2 cut(s) 474, 486
BslI CCNNNNNNNGG 2 cut(s) 681, 985
BsmAI GTCTC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 1 cut(s) 522
BsoBI CYCGRG 1 cut(s) 793
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 571, 1005
Bsp1720I GCTNAGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 522
BspCNI CTCAG 4 cut(s) 616, 943, 972, 1048
BspDI ATCGAT 1 cut(s) 897
BspHI TCATGA 1 cut(s) 1002
BspLI GGNNCC 2 cut(s) 59, 861
BspPI GGATC 1 cut(s) 566
BspT107I GGYRCC 1 cut(s) 859
BspTI CTTAAG 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 485
BsrI ACTGG 3 cut(s) 64, 418, 756
BssAI RCCGGY 1 cut(s) 485
BssMI GATC 2 cut(s) 571, 1005
BssNI GRCGYC 1 cut(s) 976
BssSI CACGAG 1 cut(s) 1041
Bst2BI CACGAG 1 cut(s) 1041
Bst4CI ACNGT 2 cut(s) 350, 493
Bst6I CTCTTC 2 cut(s) 187, 193
BstACI GRCGYC 1 cut(s) 976
BstAFI CTTAAG 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 959
BstC8I GCNNGC 4 cut(s) 25, 44, 307, 487
BstDEI CTNAG 6 cut(s) 38, 354, 603, 930, 980, 1056
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 1 cut(s) 908
BstKTI GATC 2 cut(s) 574, 1008
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 2 cut(s) 571, 1005
BstMWI GCNNNNNNNGC 5 cut(s) 43, 463, 940, 959, 975
BstNSI RCATGY 1 cut(s) 457
BstPI GGTNACC 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 877
BstV1I GCAGC 1 cut(s) 637
BstV2I GAAGAC 2 cut(s) 504, 979
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
Bsu15I ATCGAT 1 cut(s) 897
BsuRI GGCC 1 cut(s) 522
BsuTUI ATCGAT 1 cut(s) 897
BtsCI GGATG 1 cut(s) 908
BtsIMutI CAGTG 3 cut(s) 489, 571, 749
Cac8I GCNNGC 4 cut(s) 25, 44, 307, 487
CciI TCATGA 1 cut(s) 1002
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 521
ClaI ATCGAT 1 cut(s) 897
CseI GACGC 1 cut(s) 984
Csp6I GTAC 2 cut(s) 433, 997
CviAII CATG 5 cut(s) 336, 454, 530, 781, 1003
CviQI GTAC 2 cut(s) 433, 997
DdeI CTNAG 6 cut(s) 38, 354, 603, 930, 980, 1056
DpnI GATC 2 cut(s) 573, 1007
DpnII GATC 2 cut(s) 571, 1005
DraI TTTAAA 1 cut(s) 1029
DraIII CACNNNGTG 1 cut(s) 755
Eam1104I CTCTTC 2 cut(s) 187, 193
EarI CTCTTC 2 cut(s) 187, 193
Ecl136II GAGCTC 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 793
Eco91I GGTNACC 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 521
EcoO65I GGTNACC 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 548
EcoT38I GRGCYC 1 cut(s) 284
FaeI CATG 5 cut(s) 339, 457, 533, 784, 1006
FalI AAGNNNNNCTT 2 cut(s) 848, 880
FatI CATG 5 cut(s) 335, 453, 529, 780, 1002
FauNDI CATATG 1 cut(s) 577
Fnu4HI GCNGC 1 cut(s) 626
FokI GGATG 1 cut(s) 895
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 626
FspBI CTAG 2 cut(s) 936, 966
GluI GCNGC 1 cut(s) 626
GsaI CCCAGC 1 cut(s) 694
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 1 cut(s) 522
HapII CCGG 2 cut(s) 474, 486
HgaI GACGC 1 cut(s) 984
Hin1I GRCGYC 1 cut(s) 976
Hin1II CATG 5 cut(s) 339, 457, 533, 784, 1006
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 3 cut(s) 414, 746, 926
HpaII CCGG 2 cut(s) 474, 486
HphI GGTGA 3 cut(s) 147, 338, 850
Hpy166II GTNNAC 1 cut(s) 712
Hpy188I TCNGA 2 cut(s) 925, 993
Hpy188III TCNNGA 5 cut(s) 320, 411, 442, 682, 1003
Hpy8I GTNNAC 1 cut(s) 712
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 2 cut(s) 350, 493
HpyCH4IV ACGT 2 cut(s) 243, 891
HpyCH4V TGCA 6 cut(s) 27, 457, 527, 586, 953, 1020
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 463, 940, 959, 975
HpyF3I CTNAG 6 cut(s) 38, 354, 603, 930, 980, 1056
HpySE526I ACGT 2 cut(s) 243, 891
Hsp92I GRCGYC 1 cut(s) 976
Hsp92II CATG 5 cut(s) 339, 457, 533, 784, 1006
KroI GCCGGC 1 cut(s) 485
KroNI GCCGGC 1 cut(s) 487
Kzo9I GATC 2 cut(s) 571, 1005
LmnI GCTCC 2 cut(s) 63, 967
Lsp1109I GCAGC 1 cut(s) 637
LweI GCATC 3 cut(s) 36, 889, 949
MaeI CTAG 2 cut(s) 936, 966
MaeII ACGT 2 cut(s) 243, 891
MaeIII GTNAC 3 cut(s) 239, 344, 493
MalI GATC 2 cut(s) 573, 1007
MboI GATC 2 cut(s) 571, 1005
MboII GAAGA 4 cut(s) 174, 180, 504, 984
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 4 cut(s) 548, 629, 699, 786
MroNI GCCGGC 1 cut(s) 485
MroXI GAANNNNTTC 1 cut(s) 998
MseI TTAA 3 cut(s) 287, 462, 1028
MslI CAYNNNNRTG 2 cut(s) 32, 728
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 2 cut(s) 474, 486
Mva1269I GAATGC 1 cut(s) 811
MwoI GCNNNNNNNGC 5 cut(s) 43, 463, 940, 959, 975
NaeI GCCGGC 1 cut(s) 487
NdeI CATATG 1 cut(s) 577
NdeII GATC 2 cut(s) 571, 1005
NgoMIV GCCGGC 1 cut(s) 485
NlaIII CATG 5 cut(s) 339, 457, 533, 784, 1006
NlaIV GGNNCC 2 cut(s) 59, 861
NmuCI GTSAC 2 cut(s) 344, 493
NspI RCATGY 1 cut(s) 457
PaeR7I CTCGAG 1 cut(s) 793
PagI TCATGA 1 cut(s) 1002
PcsI WCGNNNNNNNCGW 1 cut(s) 1039
PctI GAATGC 1 cut(s) 811
PdiI GCCGGC 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 998
PfeI GAWTC 3 cut(s) 414, 746, 926
PflMI CCANNNNNTGG 1 cut(s) 681
PkrI GCNGC 1 cut(s) 627
Psp124BI GAGCTC 1 cut(s) 284
PspEI GGTNACC 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 690
PspN4I GGNNCC 2 cut(s) 59, 861
PspPI GGNCC 1 cut(s) 521
PspXI VCTCGAGB 1 cut(s) 793
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 2 cut(s) 434, 998
RsaNI GTAC 2 cut(s) 433, 997
RseI CAYNNNNRTG 2 cut(s) 32, 728
SacI GAGCTC 1 cut(s) 284
SaqAI TTAA 3 cut(s) 287, 462, 1028
SatI GCNGC 1 cut(s) 626
Sau3AI GATC 2 cut(s) 571, 1005
Sau96I GGNCC 1 cut(s) 521
ScaI AGTACT 1 cut(s) 998
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 3 cut(s) 36, 889, 949
SfcI CTRYAG 1 cut(s) 877
Sfr274I CTCGAG 1 cut(s) 793
SlaI CTCGAG 1 cut(s) 793
SmiMI CAYNNNNRTG 2 cut(s) 32, 728
SmlI CTYRAG 3 cut(s) 461, 516, 793
SmoI CTYRAG 3 cut(s) 461, 516, 793
Sse9I AATT 4 cut(s) 548, 629, 699, 786
SspI AATATT 1 cut(s) 595
SspMI CTAG 2 cut(s) 936, 966
SstI GAGCTC 1 cut(s) 284
TaaI ACNGT 2 cut(s) 350, 493
TaiI ACGT 2 cut(s) 246, 894
TaqI TCGA 3 cut(s) 540, 794, 897
TasI AATT 4 cut(s) 548, 629, 699, 786
TatI WGTACW 1 cut(s) 996
TfiI GAWTC 3 cut(s) 414, 746, 926
Tru1I TTAA 3 cut(s) 287, 462, 1028
Tru9I TTAA 3 cut(s) 287, 462, 1028
TscAI CASTG 3 cut(s) 496, 571, 756
TseFI GTSAC 2 cut(s) 344, 493
TseI GCWGC 1 cut(s) 625
Tsp45I GTSAC 2 cut(s) 344, 493
TspDTI ATGAA 3 cut(s) 61, 549, 991
TspRI CASTG 3 cut(s) 496, 571, 756
Van91I CCANNNNNTGG 1 cut(s) 681
Vha464I CTTAAG 1 cut(s) 461
XapI RAATTY 2 cut(s) 548, 786
XceI RCATGY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 832
XhoI CTCGAG 1 cut(s) 793
XmnI GAANNNNTTC 1 cut(s) 998
XspI CTAG 2 cut(s) 936, 966
ZrmI AGTACT 1 cut(s) 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.