Rmu_sc0002516.1_g000018

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002516.1
Physical Location & Seq
Forward (+)
93646 .. 94528
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002516.1_g000018.1.cds

Sequence Viewer

Length: 669 bp
atgcaaatcaaacttgttgctggcaactcggctggcactgtcactgcatattatttgtcttctcaaggtccaactcatgatgaaatcgacttcgagtttttggggaactcttctggtgaaccctacactctccacaccaatgtgttcagccaggggaaagggaacagagaacaacaattccatctttggtttgatcctacaaacgccttccacacctactcgcttgtctggaacagccaacgcattatattcttggtggataatattccaattagagtgttcaacaacttggagtcagttggtgttccattccccaaaacccaaccgatgaggatttactcgagtctatggaatgctgatgactgggctacacaaggtgggcgtgtgaagactgactggactcacgctcctttcactgcctcgtacagaaacttcaaggccaatgcctgcgtcgctggctcatcgtcatcatcatgcggtgtctccactactgcttcaactaattccttaactgatgaacagagtgcatggcagaatcaaggtctagatgccgcaggccgaaacaggattcgatgggtgcagcagaagttcatggtctacaactactgttctgacctaaaacgatttccccaaggtcttccggtagaatgtacacgatcaaggttctag

Protein Analysis

222

Amino Acids

25.0

Weight (kDa)

8.35

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 597
AciI CCGC 2 cut(s) 477, 552
AclWI GGATC 1 cut(s) 188
AdeI CACNNNGTG 1 cut(s) 377
AfaI GTAC 2 cut(s) 425, 652
AgsI TTSAA 3 cut(s) 283, 436, 498
AjnI CCWGG 1 cut(s) 150
AleI CACNNNNGTG 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 162, 194
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 2 cut(s) 438, 556
ApeKI GCWGC 1 cut(s) 580
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 416, 448
BbsI GAAGAC 3 cut(s) 51, 395, 629
BbvI GCAGC 1 cut(s) 592
BccI CCATC 2 cut(s) 189, 567
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 2 cut(s) 545, 667
BisI GCNGC 2 cut(s) 552, 581
BlsI GCNGC 2 cut(s) 553, 582
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 3 cut(s) 51, 395, 629
BpuEI CTTGAG 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 151, 631
BsaWI WCCGGW 1 cut(s) 640
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bse1I ACTGG 2 cut(s) 368, 401
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 151, 631
BseNI ACTGG 2 cut(s) 368, 401
BseXI GCAGC 1 cut(s) 592
BsgI GTGCAG 1 cut(s) 599
BshFI GGCC 2 cut(s) 440, 558
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 641
BsmAI GTCTC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 2 cut(s) 440, 558
BsoBI CYCGRG 1 cut(s) 340
Bsp1407I TGTACA 1 cut(s) 650
Bsp143I GATC 2 cut(s) 193, 656
BspACI CCGC 2 cut(s) 477, 552
BspANI GGCC 2 cut(s) 440, 558
BspHI TCATGA 1 cut(s) 76
BspPI GGATC 1 cut(s) 188
BsrGI TGTACA 1 cut(s) 650
BsrI ACTGG 2 cut(s) 368, 401
BssECI CCNNGG 2 cut(s) 151, 631
BssMI GATC 2 cut(s) 193, 656
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 40, 608
Bst6I CTCTTC 1 cut(s) 115
BstAUI TGTACA 1 cut(s) 650
BstC8I GCNNGC 5 cut(s) 22, 34, 448, 457, 556
BstKTI GATC 2 cut(s) 196, 659
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 2 cut(s) 193, 656
BstMWI GCNNNNNNNGC 2 cut(s) 452, 456
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 3 cut(s) 51, 395, 629
BsuRI GGCC 2 cut(s) 440, 558
BtsI GCAGTG 2 cut(s) 42, 414
BtsIMutI CAGTG 3 cut(s) 36, 42, 414
Cac8I GCNNGC 5 cut(s) 22, 34, 448, 457, 556
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 68
CseI GACGC 1 cut(s) 439
Csp6I GTAC 2 cut(s) 424, 651
CviAII CATG 4 cut(s) 77, 474, 528, 592
CviJI RGCY 7 cut(s) 32, 150, 237, 368, 440, 459, 558
CviKI_1 RGCY 7 cut(s) 32, 150, 237, 368, 440, 459, 558
CviQI GTAC 2 cut(s) 424, 651
DpnI GATC 2 cut(s) 195, 658
DpnII GATC 2 cut(s) 193, 656
DraIII CACNNNGTG 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 631
FaeI CATG 4 cut(s) 80, 477, 531, 595
FaiI YATR 7 cut(s) 49, 78, 248, 349, 475, 529, 593
FatI CATG 4 cut(s) 76, 473, 527, 591
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 2 cut(s) 552, 581
Fsp4HI GCNGC 2 cut(s) 552, 581
FspBI CTAG 2 cut(s) 545, 667
GluI GCNGC 2 cut(s) 552, 581
HaeIII GGCC 2 cut(s) 440, 558
HapII CCGG 1 cut(s) 641
HgaI GACGC 1 cut(s) 439
Hin1II CATG 4 cut(s) 80, 477, 531, 595
HinfI GANTC 5 cut(s) 293, 343, 400, 535, 568
HpaII CCGG 1 cut(s) 641
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 3 cut(s) 119, 598, 653
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 3 cut(s) 77, 229, 545
Hpy8I GTNNAC 3 cut(s) 119, 598, 653
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 40, 608
HpyCH4V TGCA 4 cut(s) 4, 47, 527, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 456
Hsp92II CATG 4 cut(s) 80, 477, 531, 595
Kzo9I GATC 2 cut(s) 193, 656
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 1 cut(s) 538
MaeI CTAG 2 cut(s) 545, 667
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 195, 658
MboI GATC 2 cut(s) 193, 656
MboII GAAGA 4 cut(s) 51, 102, 400, 629
MluCI AATT 3 cut(s) 176, 270, 502
MlyI GAGTC 3 cut(s) 302, 352, 394
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 2 cut(s) 324, 430
MseI TTAA 1 cut(s) 509
MslI CAYNNNNRTG 3 cut(s) 138, 140, 472
MspI CCGG 1 cut(s) 641
MspR9I CCNGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 452, 456
NdeII GATC 2 cut(s) 193, 656
NlaIII CATG 4 cut(s) 80, 477, 531, 595
NmeAIII GCCGAG 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 40
OliI CACNNNNGTG 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 340
PagI TCATGA 1 cut(s) 76
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 2 cut(s) 535, 568
PkrI GCNGC 2 cut(s) 553, 582
PleI GAGTC 3 cut(s) 301, 351, 394
PpsI GAGTC 3 cut(s) 301, 351, 394
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspPI GGNCC 1 cut(s) 68
PspXI VCTCGAGB 1 cut(s) 340
RsaI GTAC 2 cut(s) 425, 652
RsaNI GTAC 2 cut(s) 424, 651
RseI CAYNNNNRTG 3 cut(s) 138, 140, 472
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 2 cut(s) 552, 581
Sau3AI GATC 2 cut(s) 193, 656
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 3 cut(s) 302, 352, 394
ScrFI CCNGG 1 cut(s) 152
SetI ASST 7 cut(s) 70, 218, 379, 544, 618, 637, 665
SfaNI GCATC 1 cut(s) 538
Sfr274I CTCGAG 1 cut(s) 340
SinI GGWCC 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 340
SmiMI CAYNNNNRTG 3 cut(s) 138, 140, 472
SmlI CTYRAG 2 cut(s) 63, 340
SmoI CTYRAG 2 cut(s) 63, 340
Sse9I AATT 3 cut(s) 176, 270, 502
SsiI CCGC 2 cut(s) 477, 552
SspI AATATT 1 cut(s) 265
SspMI CTAG 2 cut(s) 545, 667
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 2 cut(s) 40, 608
TaqI TCGA 4 cut(s) 87, 93, 341, 571
TasI AATT 3 cut(s) 176, 270, 502
TatI WGTACW 1 cut(s) 650
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 2 cut(s) 535, 568
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 3 cut(s) 43, 49, 421
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 580
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 3 cut(s) 96, 531, 580
TspRI CASTG 3 cut(s) 43, 49, 421
VpaK11BI GGWCC 1 cut(s) 68
XbaI TCTAGA 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 340
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 2 cut(s) 545, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.