Rorug02G0425700

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
54669115 .. 54669738
624 bp
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UTR
Exon/CDS
Intron
Rorug02G0425700.1

Sequence Viewer

Length: 624 bp
ATGGGGCAGAGAGGACTGTTTTGGGGGGCACAAACTACAGCTGCAGCGCCGACGATTTTGGCTGGTGATCTGCAATTGCATTTGGGGTCAACTGCTTCCAGTTCGGGGATGTCTACTGCCAGTGTCTCGGGCTTGCATGCTAGGGTTTTGGCGTATAGCCAAACCCTAGTTTTCAAGACTCATATTCCAAATCCAATTTCAGTACCACCATTGAGTTCTTTCTTGGCTAAACCTCAGTGTCAGGTGGTGATTCGAGAGCTACAAGAAACTGCTATAACACCGAAAAGGATTTCTGGTAAGCGTAGAGGTCGTTCTGATGAAGGGGTAACCATCTCCCCAAAGACACTAAAACTTAGCTTGGCGGGGGGTAAGCGTAATTTGAACTTGGAGCCGGAAAGCCTTGGTTTGGTCTCTCTGCTGGAGGAAGGCAGTTCTGGGAGTGGAAAGAGGAAGTATGGACACCCTGCTGGCAGTAGGAACAAGTTGCCATATGGGGATAAGAAGAAAGGTACAGCGAATGATGAGGCTGTGAAAGTGAAGAAATCTTCCAAGAAGGACAAGGTGAAGATTGCAACTGCTGGTATGAGCTCCAACTCGAAAGGGAAGGAGCTAGTTATTTACTAA

Protein Analysis

207

Amino Acids

21.85

Weight (kDa)

10.2

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 113
AciI CCGC 1 cut(s) 362
AfaI GTAC 2 cut(s) 204, 511
AfiI CCNNNNNNNGG 2 cut(s) 105, 406
AgsI TTSAA 2 cut(s) 175, 382
AjuI GAANNNNNNNTTGG 2 cut(s) 181, 213
AluBI AGCT 5 cut(s) 41, 259, 357, 588, 610
AluI AGCT 5 cut(s) 41, 259, 357, 588, 610
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 2 cut(s) 130, 415
Ama87I CYCGRG 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 41, 44
AspLEI GCGC 1 cut(s) 49
AsuHPI GGTGA 3 cut(s) 77, 259, 574
AvaI CYCGRG 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 2 cut(s) 28, 56
BccI CCATC 1 cut(s) 338
BcoDI GTCTC 2 cut(s) 130, 415
BfaI CTAG 3 cut(s) 141, 167, 611
BfmI CTRYAG 2 cut(s) 36, 42
BfoI RGCGCY 1 cut(s) 50
BisI GCNGC 2 cut(s) 42, 45
BlsI GCNGC 2 cut(s) 43, 46
BmeT110I CYCGRG 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 415
BsaJI CCNNGG 1 cut(s) 400
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 406
Bse1I ACTGG 2 cut(s) 99, 120
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 105, 406
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 2 cut(s) 99, 120
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 2 cut(s) 28, 56
BsiHKAI GWGCWC 1 cut(s) 590
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 105, 406
BsmAI GTCTC 2 cut(s) 130, 415
Bso31I GGTCTC 1 cut(s) 415
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 31, 590
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 1 cut(s) 362
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 390
BspMAI CTGCAG 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 415
BsrI ACTGG 2 cut(s) 99, 120
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 400
Bst4CI ACNGT 1 cut(s) 18
BstC8I GCNNGC 3 cut(s) 134, 138, 469
BstDEI CTNAG 2 cut(s) 234, 353
BstEII GGTNACC 1 cut(s) 325
BstF5I GGATG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 2 cut(s) 130, 415
BstMBI GATC 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 140
BstPI GGTNACC 1 cut(s) 325
BstSFI CTRYAG 2 cut(s) 36, 42
BstSLI GKGCMC 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 28, 56
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 127, 242
Cac8I GCNNGC 3 cut(s) 134, 138, 469
CfoI GCGC 1 cut(s) 49
Csp6I GTAC 2 cut(s) 203, 510
CviAII CATG 1 cut(s) 137
CviQI GTAC 2 cut(s) 203, 510
DdeI CTNAG 2 cut(s) 234, 353
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 588
Eco130I CCWWGG 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 590
Eco31I GGTCTC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 588
EcoO65I GGTNACC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 590
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 1 cut(s) 140
FaiI YATR 8 cut(s) 138, 156, 183, 275, 456, 490, 492, 584
FatI CATG 1 cut(s) 136
FauI CCCGC 1 cut(s) 355
FauNDI CATATG 1 cut(s) 490
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 2 cut(s) 42, 45
FokI GGATG 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 590
Fsp4HI GCNGC 2 cut(s) 42, 45
FspBI CTAG 3 cut(s) 141, 167, 611
GlaI GCGC 1 cut(s) 48
GluI GCNGC 2 cut(s) 42, 45
GsuI CTGGAG 1 cut(s) 440
HaeII RGCGCY 1 cut(s) 50
HapII CCGG 1 cut(s) 392
HhaI GCGC 1 cut(s) 49
Hin1II CATG 1 cut(s) 140
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 2 cut(s) 178, 250
HpaII CCGG 1 cut(s) 392
HphI GGTGA 3 cut(s) 77, 259, 574
Hpy166II GTNNAC 2 cut(s) 90, 114
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 2 cut(s) 175, 254
Hpy8I GTNNAC 2 cut(s) 90, 114
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 4 cut(s) 314, 419, 547, 598
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 5 cut(s) 44, 73, 79, 136, 572
HpyF3I CTNAG 2 cut(s) 234, 353
Hsp92II CATG 1 cut(s) 140
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 3 cut(s) 388, 593, 607
Lsp1109I GCAGC 2 cut(s) 28, 56
MaeI CTAG 3 cut(s) 141, 167, 611
MaeIII GTNAC 1 cut(s) 325
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 4 cut(s) 514, 537, 550, 577
MfeI CAATTG 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 31, 590
MluCI AATT 3 cut(s) 74, 195, 376
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 615
MnlI CCTC 6 cut(s) 5, 243, 299, 415, 441, 517
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 392
MunI CAATTG 1 cut(s) 74
NdeI CATATG 1 cut(s) 490
NdeII GATC 1 cut(s) 67
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 390
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 2 cut(s) 43, 46
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 590
PspEI GGTNACC 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 390
PsrI GAACNNNNNNTAC 2 cut(s) 295, 327
PstI CTGCAG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 2 cut(s) 204, 511
RsaNI GTAC 2 cut(s) 203, 510
SacI GAGCTC 1 cut(s) 590
SatI GCNGC 2 cut(s) 42, 45
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 172
SduI GDGCHC 2 cut(s) 31, 590
SfcI CTRYAG 2 cut(s) 36, 42
SphI GCATGC 1 cut(s) 140
Sse9I AATT 3 cut(s) 74, 195, 376
SsiI CCGC 1 cut(s) 362
SspMI CTAG 3 cut(s) 141, 167, 611
SstI GAGCTC 1 cut(s) 590
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 253, 596
TasI AATT 3 cut(s) 74, 195, 376
TfiI GAWTC 1 cut(s) 250
TscAI CASTG 2 cut(s) 127, 242
TseI GCWGC 2 cut(s) 41, 44
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 2 cut(s) 127, 242
XceI RCATGY 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 113
XspI CTAG 3 cut(s) 141, 167, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.