Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000406

Physical Location & Seq

Genomic Coordinates Forward (+)

12142423 .. 12143827

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1152700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCTTATTCTTCTAAGCTCTCAATGGTGGTGCTTCTTTCTTTATTCATAACTTGTGTCATGGCCATGGCTGCCTCGGCTGGCAATTTCTATCAAGATTTTGACGTTACATTCGGCGACGGACGTGCCAAGATACTCAACGGAGGACAACTCCTCACTCTTAACCTTGATCAGACATCCGGCTCCGGTTTCAAGTCCAAGAACGAGTACTTATTTGGAAGGATTGACATGCAGATCAAGCTCGTCTCAGGCAACTCAGCGGGAACTGTCACTGCCTACTATTTATCTTCTGAAGGTCCTACTCATGACGAAATCGACTTTGAGTTTTTGGGAAACCTATCTGGGGATCCCTACACTCTCCATACCAATGTGTTCAGCCAAGGAAAAGGAAACAGAGAACAACAATTCCATCTTTGGTTTGATCCCACAAAGGCCTTCCACACCTACTCCATTGTTTGGAACGCGCAACGTATTATATTTTTGGTGGATAAAATTCCAATTAGAGTGTTCAACAACTTGGAATCAGTTGGTGTCCCATTCCCTAAAAGCCAGCCCATGAGGATTTACTCAAGCCTGTGGAATGCAGATGACTGGGCAACAAGAGGTGGCCTTGTCAAGACTGATTGGACTCAAGCTCCTTTCACCGCCTCTTACAGAAACTTCAAGGCCGATGCTTGTACTGCTGGCTCATCATCCTCCTGTGCCTCCACTGCATCTACCAGTTCAGTAGGGGACAGTGCATGGCAGACTCAAGGGCTCGATGCAGCCGGCCGTAACCGGCTTCGATGGGTGCAACAGAAGTTCATGGTCTACAACTACTGCAGTGACCTTAAACGCTTCCCGCAAGGCCTCCCAGCTGAATGCAGAAGATCAAGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

294

Amino Acids

32.65

Weight (kDa)

8.74

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	31 - 210	6.9e-66	Glycosyl hydrolases family 16
XET_C	PF06955	245 - 288	2e-19	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23730 AT4G14130
fragaria_vesca	FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica	MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica	Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis	pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis	RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata	RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora	Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa	Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha	Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana	Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	810
AccII	CGCG	1 cut(s)	464
AciI	CCGC	3 cut(s)	260, 645, 842
AclWI	GGATC	3 cut(s)	341, 354, 416
AcoI	YGGCCR	2 cut(s)	63, 769
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	209, 679
AfiI	CCNNNNNNNGG	2 cut(s)	343, 456
AgsI	TTSAA	3 cut(s)	193, 511, 664
AjiI	CACGTC	1 cut(s)	125
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	4 cut(s)	19, 241, 635, 857
AluI	AGCT	4 cut(s)	19, 241, 635, 857
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	3 cut(s)	341, 354, 416
AoxI	GGCC	6 cut(s)	63, 432, 607, 666, 769, 847
ApeKI	GCWGC	2 cut(s)	71, 764
ApoI	RAATTY	1 cut(s)	492
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	634
AvaII	GGWCC	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	759
BbvI	GCAGC	2 cut(s)	58, 776
BccI	CCATC	2 cut(s)	417, 780
BceAI	ACGGC	1 cut(s)	756
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	250
BfmI	CTRYAG	1 cut(s)	820
BisI	GCNGC	2 cut(s)	72, 765
BlsI	GCNGC	2 cut(s)	73, 766
BmcAI	AGTACT	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	296
BmgBI	CACGTC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	184, 348
BmrI	ACTGGG	1 cut(s)	601
BmsI	GCATC	3 cut(s)	661, 722, 751
BmuI	ACTGGG	1 cut(s)	601
BplI	GAGNNNNNCTC	2 cut(s)	135, 167
BpuEI	CTTGAG	3 cut(s)	553, 615, 735
BsaJI	CCNNGG	3 cut(s)	66, 75, 379
BsaWI	WCCGGW	1 cut(s)	185
BsaXI	ACNNNNNCTCC	4 cut(s)	431, 461, 619, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 456
Bse118I	RCCGGY	2 cut(s)	767, 777
Bse1I	ACTGG	2 cut(s)	596, 720
BseDI	CCNNGG	3 cut(s)	66, 75, 379
BseGI	GGATG	2 cut(s)	176, 692
BseLI	CCNNNNNNNGG	2 cut(s)	343, 456
BseMII	CTCAG	2 cut(s)	261, 270
BseNI	ACTGG	2 cut(s)	596, 720
BseRI	GAGGAG	1 cut(s)	143
BseX3I	CGGCCG	1 cut(s)	769
BseXI	GCAGC	2 cut(s)	58, 776
BseYI	CCCAGC	1 cut(s)	853
Bsh1236I	CGCG	1 cut(s)	464
Bsh1285I	CGRYCG	1 cut(s)	772
BshFI	GGCC	6 cut(s)	65, 434, 609, 668, 771, 849
BsiEI	CGRYCG	1 cut(s)	772
BsiSI	CCGG	4 cut(s)	180, 186, 768, 778
BslFI	GGGAC	2 cut(s)	518, 746
BslI	CCNNNNNNNGG	2 cut(s)	343, 456
BsmAI	GTCTC	1 cut(s)	250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	518, 746
BsmI	GAATGC	2 cut(s)	586, 866
BsnI	GGCC	6 cut(s)	65, 434, 609, 668, 771, 849
Bsp1286I	GDGCHC	1 cut(s)	759
Bsp143I	GATC	5 cut(s)	169, 234, 346, 421, 869
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	3 cut(s)	260, 645, 842
BspANI	GGCC	6 cut(s)	65, 434, 609, 668, 771, 849
BspCNI	CTCAG	2 cut(s)	260, 269
BspFNI	CGCG	1 cut(s)	464
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	184, 348
BspMAI	CTGCAG	1 cut(s)	824
BspPI	GGATC	3 cut(s)	341, 354, 416
BsrFI	RCCGGY	2 cut(s)	767, 777
BsrI	ACTGG	2 cut(s)	596, 720
BssAI	RCCGGY	2 cut(s)	767, 777
BssECI	CCNNGG	3 cut(s)	66, 75, 379
BssMI	GATC	5 cut(s)	169, 234, 346, 421, 869
BssT1I	CCWWGG	2 cut(s)	66, 379
Bst4CI	ACNGT	2 cut(s)	268, 737
BstC8I	GCNNGC	4 cut(s)	82, 551, 685, 769
BstDEI	CTNAG	3 cut(s)	15, 247, 256
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	176, 692
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	5 cut(s)	172, 237, 349, 424, 872
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	5 cut(s)	169, 234, 346, 421, 869
BstMCI	CGRYCG	1 cut(s)	772
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 77, 238, 680, 710
BstNSI	RCATGY	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	820
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	2 cut(s)	58, 776
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BstZI	CGGCCG	1 cut(s)	769
BsuRI	GGCC	6 cut(s)	65, 434, 609, 668, 771, 849
BtgI	CCRYGG	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	176, 692
BtsI	GCAGTG	3 cut(s)	270, 708, 829
BtsIMutI	CAGTG	4 cut(s)	270, 708, 742, 829
Cac8I	GCNNGC	4 cut(s)	82, 551, 685, 769
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	466
Cfr10I	RCCGGY	2 cut(s)	767, 777
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	208, 678
CviAII	CATG	7 cut(s)	61, 67, 229, 305, 556, 741, 805
CviQI	GTAC	2 cut(s)	208, 678
DdeI	CTNAG	3 cut(s)	15, 247, 256
DpnI	GATC	5 cut(s)	171, 236, 348, 423, 871
DpnII	GATC	5 cut(s)	169, 234, 346, 421, 869
EaeI	YGGCCR	2 cut(s)	63, 769
EagI	CGGCCG	1 cut(s)	769
EclXI	CGGCCG	1 cut(s)	769
Eco130I	CCWWGG	2 cut(s)	66, 379
Eco147I	AGGCCT	2 cut(s)	434, 849
Eco24I	GRGCYC	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	296
Eco52I	CGGCCG	1 cut(s)	769
Eco57I	CTGAAG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	296
EcoT14I	CCWWGG	2 cut(s)	66, 379
EcoT38I	GRGCYC	1 cut(s)	759
ErhI	CCWWGG	2 cut(s)	66, 379
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	7 cut(s)	64, 70, 232, 308, 559, 744, 808
FaqI	GGGAC	2 cut(s)	518, 746
FatI	CATG	7 cut(s)	60, 66, 228, 304, 555, 740, 804
FauI	CCCGC	2 cut(s)	253, 849
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	810
Fnu4HI	GCNGC	2 cut(s)	72, 765
FokI	GGATG	2 cut(s)	163, 679
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	2 cut(s)	72, 765
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	2 cut(s)	72, 765
GsaI	CCCAGC	1 cut(s)	857
HaeIII	GGCC	6 cut(s)	65, 434, 609, 668, 771, 849
HapII	CCGG	4 cut(s)	180, 186, 768, 778
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	7 cut(s)	64, 70, 232, 308, 559, 744, 808
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HinfI	GANTC	3 cut(s)	521, 628, 748
HpaII	CCGG	4 cut(s)	180, 186, 768, 778
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	1 cut(s)	811
Hpy188I	TCNGA	2 cut(s)	174, 292
Hpy188III	TCNNGA	3 cut(s)	95, 305, 616
Hpy8I	GTNNAC	1 cut(s)	811
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	213, 287, 445
HpyCH4III	ACNGT	2 cut(s)	268, 737
HpyCH4IV	ACGT	3 cut(s)	105, 124, 469
HpyCH4V	TGCA	8 cut(s)	232, 584, 713, 740, 764, 793, 822, 864
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 77, 238, 680, 710
HpyF3I	CTNAG	3 cut(s)	15, 247, 256
HpySE526I	ACGT	3 cut(s)	105, 124, 469
Hsp92II	CATG	7 cut(s)	64, 70, 232, 308, 559, 744, 808
HspAI	GCGC	1 cut(s)	464
KroI	GCCGGC	1 cut(s)	767
KroNI	GCCGGC	1 cut(s)	769
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	169, 234, 346, 421, 869
LmnI	GCTCC	2 cut(s)	188, 640
Lsp1109I	GCAGC	2 cut(s)	58, 776
LweI	GCATC	3 cut(s)	661, 722, 751
MaeII	ACGT	3 cut(s)	105, 124, 469
MaeIII	GTNAC	4 cut(s)	106, 268, 773, 824
MalI	GATC	5 cut(s)	171, 236, 348, 423, 871
MboI	GATC	5 cut(s)	169, 234, 346, 421, 869
MboII	GAAGA	3 cut(s)	3, 279, 879
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	759
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	4 cut(s)	85, 404, 492, 498
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	2 cut(s)	622, 742
MnlI	CCTC	9 cut(s)	85, 137, 164, 552, 596, 658, 706, 715, 860
Mox20I	TGGCCA	1 cut(s)	65
MroNI	GCCGGC	1 cut(s)	767
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	2 cut(s)	162, 831
MslI	CAYNNNNRTG	2 cut(s)	65, 366
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	260, 857
MspI	CCGG	4 cut(s)	180, 186, 768, 778
Mva1269I	GAATGC	2 cut(s)	586, 866
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	5 cut(s)	71, 77, 238, 680, 710
NaeI	GCCGGC	1 cut(s)	769
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	5 cut(s)	169, 234, 346, 421, 869
NgoMIV	GCCGGC	1 cut(s)	767
NlaIII	CATG	7 cut(s)	64, 70, 232, 308, 559, 744, 808
NlaIV	GGNNCC	2 cut(s)	184, 348
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	2 cut(s)	268, 824
NspI	RCATGY	1 cut(s)	232
PagI	TCATGA	1 cut(s)	304
PceI	AGGCCT	2 cut(s)	434, 849
PctI	GAATGC	2 cut(s)	586, 866
PdiI	GCCGGC	1 cut(s)	769
PfeI	GAWTC	1 cut(s)	521
PflMI	CCANNNNNTGG	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	73, 766
PleI	GAGTC	2 cut(s)	622, 742
PpsI	GAGTC	2 cut(s)	622, 742
PpuMI	RGGWCCY	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	853
PspN4I	GGNNCC	2 cut(s)	184, 348
PspPI	GGNCC	1 cut(s)	296
PspPPI	RGGWCCY	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	824
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	2 cut(s)	209, 679
RsaNI	GTAC	2 cut(s)	208, 678
RseI	CAYNNNNRTG	2 cut(s)	65, 366
SaqAI	TTAA	2 cut(s)	162, 831
SatI	GCNGC	2 cut(s)	72, 765
Sau3AI	GATC	5 cut(s)	169, 234, 346, 421, 869
Sau96I	GGNCC	1 cut(s)	296
ScaI	AGTACT	1 cut(s)	209
SchI	GAGTC	2 cut(s)	622, 742
SduI	GDGCHC	1 cut(s)	759
SfaNI	GCATC	3 cut(s)	661, 722, 751
SfcI	CTRYAG	1 cut(s)	820
SinI	GGWCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	2 cut(s)	65, 366
SmlI	CTYRAG	3 cut(s)	568, 630, 750
SmoI	CTYRAG	3 cut(s)	568, 630, 750
Sse9I	AATT	4 cut(s)	85, 404, 492, 498
SseBI	AGGCCT	2 cut(s)	434, 849
SsiI	CCGC	3 cut(s)	260, 645, 842
StuI	AGGCCT	2 cut(s)	434, 849
StyI	CCWWGG	2 cut(s)	66, 379
TaaI	ACNGT	2 cut(s)	268, 737
TaiI	ACGT	3 cut(s)	108, 127, 472
TaqI	TCGA	3 cut(s)	315, 759, 784
TasI	AATT	4 cut(s)	85, 404, 492, 498
TatI	WGTACW	2 cut(s)	207, 677
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	2 cut(s)	162, 831
Tru9I	TTAA	2 cut(s)	162, 831
TscAI	CASTG	4 cut(s)	277, 715, 742, 829
TseFI	GTSAC	2 cut(s)	268, 824
TseI	GCWGC	2 cut(s)	71, 764
Tsp45I	GTSAC	2 cut(s)	268, 824
TspDTI	ATGAA	2 cut(s)	37, 793
TspGWI	ACGGA	2 cut(s)	135, 156
TspRI	CASTG	4 cut(s)	277, 715, 742, 829
Van91I	CCANNNNNTGG	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	810
ZrmI	AGTACT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.