FvH4_6g38160

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
30196094 .. 30197635
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38160.t1

Sequence Viewer

Length: 948 bp
ATGCCTAAACTATACCATCAAACACACCAACATCTTCATCTTCTCACTTCTCCAATGTCTTCCTCTAAGGTCTCAGTGATGCTCTCCCTCTCTGCTGTGTTGTTAAGTTCCCTCCTGGCCATGGCTGCTGCTGGCAATTTCTATCAAGACTTTGACATCACGTTCGGCGAACAACGTGCTAAGATACTCAACGGAGGACAGCTTCTCACACTCGACCTCGACCAGTATTCCGGATCTGGTTTCAAGTCCAAGAATGAATATTTGTTTGGAAGGATCGACATGCAAATCAGACTTGTTGCTGGCAACTCAGCTGGAACTGTCACTGCATATTATTTGTCTTCTCAAGGTCCAACTCATGATGAAATCGATTTCGAGTTTCTGGGAAACTCAACTGGAGAACCCTACACTCTCCACACCAATGTGTTCAGCCAGGGAAAAGGGAACAGAGAGCAACAATTCCATCTTTGGTTTGATCCAACAAAGGCCTTCCACACCTACTCTCTTGTGTGGAACAGCCAACGAATTATATTCTTGGTGGATAACATTCCAATTAGAGTGTTCAACAACTTGGAGTCAGTTGGTGTTCCATTCCCCAAAAACCAACCGATGAGGATTTACTCCAGTCTGTGGAATGCTGATGACTGGGCTACACAAGGTGGGCGTGTCAAGACTGACTGGACTCATGCTCCTTTCACTGCCTCCTATAGAAACTTCAAGGCCAATGCTTGTGTCGCTGGCTCATCTTCATCATCATGCGGTGTCACCACTAGTGCTTCAACTAATTCCTTAACTGATCAACAGAGGTCATGGCACAATCAAGGTCTAGATGCCGCAGGCCGAAACAGGATTCGATGGGTGCAGCAGAAGTTCATGGTCTACAACTACTGTGCTGACCTAAAACGATTTCCCCAAGGTCTTCCGGTGGAATGTAGTCGATCAAGGTTCTAG

Protein Analysis

316

Amino Acids

35.41

Weight (kDa)

8.97

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 48 - 227 9.1e-67 Glycosyl hydrolases family 16
XET_C PF06955 267 - 310 1.6e-18 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 627
AccI GTMKAC 1 cut(s) 876
AccIII TCCGGA 1 cut(s) 230
AciI CCGC 2 cut(s) 756, 831
AclWI GGATC 3 cut(s) 241, 281, 467
AcoI YGGCCR 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 656
AfiI CCNNNNNNNGG 2 cut(s) 121, 627
AgsI TTSAA 4 cut(s) 244, 562, 715, 777
AhlI ACTAGT 1 cut(s) 767
AjnI CCWGG 2 cut(s) 114, 429
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AleI CACNNNNGTG 1 cut(s) 419
AluBI AGCT 2 cut(s) 202, 311
AluI AGCT 2 cut(s) 202, 311
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 3 cut(s) 241, 281, 467
Aor13HI TCCGGA 1 cut(s) 230
AoxI GGCC 4 cut(s) 117, 483, 717, 835
ApeKI GCWGC 3 cut(s) 125, 128, 859
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 754
AvaII GGWCC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 119
BbsI GAAGAC 3 cut(s) 51, 330, 908
BbvI GCAGC 3 cut(s) 112, 115, 871
BccI CCATC 3 cut(s) 24, 468, 846
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 2 cut(s) 116, 431
BclI TGATCA 1 cut(s) 793
BcoDI GTCTC 1 cut(s) 76
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 3 cut(s) 768, 824, 946
BfmI CTRYAG 1 cut(s) 703
BisI GCNGC 4 cut(s) 126, 129, 831, 860
BlsI GCNGC 4 cut(s) 127, 130, 832, 861
Bme1390I CCNGG 2 cut(s) 116, 431
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmrFI CCNGG 2 cut(s) 116, 431
BmrI ACTGGG 1 cut(s) 652
BmsI GCATC 2 cut(s) 69, 817
BmuI ACTGGG 1 cut(s) 652
BpiI GAAGAC 3 cut(s) 51, 330, 908
BpmI CTGGAG 2 cut(s) 414, 604
BpuEI CTTGAG 1 cut(s) 327
Bsa29I ATCGAT 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 120, 430, 910
BsaWI WCCGGW 2 cut(s) 230, 919
BsaXI ACNNNNNCTCC 2 cut(s) 670, 700
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 627
Bse1I ACTGG 5 cut(s) 223, 397, 621, 647, 680
BseAI TCCGGA 1 cut(s) 230
BseBI CCWGG 2 cut(s) 116, 431
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 3 cut(s) 120, 430, 910
BseLI CCNNNNNNNGG 2 cut(s) 121, 627
BseMII CTCAG 2 cut(s) 87, 321
BseNI ACTGG 5 cut(s) 223, 397, 621, 647, 680
BseXI GCAGC 3 cut(s) 112, 115, 871
BsgI GTGCAG 1 cut(s) 878
BshFI GGCC 4 cut(s) 119, 485, 719, 837
BshVI ATCGAT 1 cut(s) 366
BsiSI CCGG 2 cut(s) 231, 920
BslI CCNNNNNNNGG 2 cut(s) 121, 627
BsmAI GTCTC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 4 cut(s) 119, 485, 719, 837
Bso31I GGTCTC 1 cut(s) 76
Bsp13I TCCGGA 1 cut(s) 230
Bsp143I GATC 5 cut(s) 233, 273, 472, 793, 935
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 2 cut(s) 756, 831
BspANI GGCC 4 cut(s) 119, 485, 719, 837
BspCNI CTCAG 2 cut(s) 86, 320
BspDI ATCGAT 1 cut(s) 366
BspEI TCCGGA 1 cut(s) 230
BspHI TCATGA 1 cut(s) 355
BspPI GGATC 3 cut(s) 241, 281, 467
BspTNI GGTCTC 1 cut(s) 76
BsrI ACTGG 5 cut(s) 223, 397, 621, 647, 680
BssECI CCNNGG 3 cut(s) 120, 430, 910
BssMI GATC 5 cut(s) 233, 273, 472, 793, 935
BssT1I CCWWGG 2 cut(s) 120, 910
Bst2UI CCWGG 2 cut(s) 116, 431
Bst4CI ACNGT 2 cut(s) 319, 887
BstC8I GCNNGC 4 cut(s) 133, 301, 736, 835
BstDEI CTNAG 4 cut(s) 66, 73, 180, 307
BstDSI CCRYGG 1 cut(s) 120
BstKTI GATC 5 cut(s) 236, 276, 475, 796, 938
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 5 cut(s) 233, 273, 472, 793, 935
BstMWI GCNNNNNNNGC 2 cut(s) 125, 731
BstNI CCWGG 2 cut(s) 116, 431
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 114, 429
BstSFI CTRYAG 1 cut(s) 703
BstV1I GCAGC 3 cut(s) 112, 115, 871
BstV2I GAAGAC 3 cut(s) 51, 330, 908
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
Bsu15I ATCGAT 1 cut(s) 366
BsuRI GGCC 4 cut(s) 119, 485, 719, 837
BsuTUI ATCGAT 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 120
BtsI GCAGTG 2 cut(s) 321, 693
BtsIMutI CAGTG 3 cut(s) 81, 321, 693
Cac8I GCNNGC 4 cut(s) 133, 301, 736, 835
CciI TCATGA 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 347
ClaI ATCGAT 1 cut(s) 366
CviAII CATG 7 cut(s) 121, 280, 356, 683, 753, 807, 871
DdeI CTNAG 4 cut(s) 66, 73, 180, 307
DpnI GATC 5 cut(s) 235, 275, 474, 795, 937
DpnII GATC 5 cut(s) 233, 273, 472, 793, 935
DraIII CACNNNGTG 1 cut(s) 656
EaeI YGGCCR 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 120, 910
Eco147I AGGCCT 1 cut(s) 485
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 114, 429
EcoT14I CCWWGG 2 cut(s) 120, 910
ErhI CCWWGG 2 cut(s) 120, 910
FaeI CATG 7 cut(s) 124, 283, 359, 686, 756, 810, 874
FatI CATG 7 cut(s) 120, 279, 355, 682, 752, 806, 870
FbaI TGATCA 1 cut(s) 793
FblI GTMKAC 1 cut(s) 876
Fnu4HI GCNGC 4 cut(s) 126, 129, 831, 860
Fsp4HI GCNGC 4 cut(s) 126, 129, 831, 860
FspBI CTAG 3 cut(s) 768, 824, 946
GluI GCNGC 4 cut(s) 126, 129, 831, 860
GsuI CTGGAG 2 cut(s) 414, 604
HaeIII GGCC 4 cut(s) 119, 485, 719, 837
HapII CCGG 2 cut(s) 231, 920
Hin1II CATG 7 cut(s) 124, 283, 359, 686, 756, 810, 874
HinfI GANTC 3 cut(s) 572, 679, 847
HpaII CCGG 2 cut(s) 231, 920
HphI GGTGA 1 cut(s) 754
Hpy166II GTNNAC 1 cut(s) 877
Hpy188I TCNGA 1 cut(s) 290
Hpy188III TCNNGA 5 cut(s) 146, 231, 356, 667, 824
Hpy8I GTNNAC 1 cut(s) 877
HpyAV CCTTC 2 cut(s) 264, 496
HpyCH4III ACNGT 2 cut(s) 319, 887
HpyCH4IV ACGT 2 cut(s) 161, 175
HpyCH4V TGCA 3 cut(s) 283, 326, 859
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 731
HpyF3I CTNAG 4 cut(s) 66, 73, 180, 307
HpySE526I ACGT 2 cut(s) 161, 175
Hsp92II CATG 7 cut(s) 124, 283, 359, 686, 756, 810, 874
Kpn2I TCCGGA 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 5 cut(s) 233, 273, 472, 793, 935
LmnI GCTCC 1 cut(s) 691
Lsp1109I GCAGC 3 cut(s) 112, 115, 871
LweI GCATC 2 cut(s) 69, 817
MaeI CTAG 3 cut(s) 768, 824, 946
MaeII ACGT 2 cut(s) 161, 175
MaeIII GTNAC 2 cut(s) 319, 760
MalI GATC 5 cut(s) 235, 275, 474, 795, 937
MboI GATC 5 cut(s) 233, 273, 472, 793, 935
MboII GAAGA 6 cut(s) 26, 32, 51, 330, 735, 908
MflI RGATCY 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 5 cut(s) 136, 455, 522, 549, 781
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 2 cut(s) 581, 673
MmeI TCCRAC 2 cut(s) 374, 500
MnlI CCTC 8 cut(s) 73, 98, 122, 188, 227, 603, 709, 795
Mox20I TGGCCA 1 cut(s) 119
MroI TCCGGA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 119
MseI TTAA 2 cut(s) 104, 788
MslI CAYNNNNRTG 3 cut(s) 417, 419, 751
Msp20I TGGCCA 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 2 cut(s) 231, 920
MspR9I CCNGG 2 cut(s) 116, 431
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 2 cut(s) 116, 431
MwoI GCNNNNNNNGC 2 cut(s) 125, 731
NcoI CCATGG 1 cut(s) 120
NdeII GATC 5 cut(s) 233, 273, 472, 793, 935
NlaIII CATG 7 cut(s) 124, 283, 359, 686, 756, 810, 874
NmuCI GTSAC 2 cut(s) 319, 760
NspI RCATGY 1 cut(s) 283
OliI CACNNNNGTG 1 cut(s) 419
PagI TCATGA 1 cut(s) 355
PceI AGGCCT 1 cut(s) 485
PctI GAATGC 1 cut(s) 637
PfeI GAWTC 1 cut(s) 847
PflMI CCANNNNNTGG 1 cut(s) 627
PkrI GCNGC 4 cut(s) 127, 130, 832, 861
PleI GAGTC 2 cut(s) 580, 673
PpsI GAGTC 2 cut(s) 580, 673
Psp6I CCWGG 2 cut(s) 114, 429
PspGI CCWGG 2 cut(s) 114, 429
PspPI GGNCC 1 cut(s) 347
PsuI RGATCY 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 311
RseI CAYNNNNRTG 3 cut(s) 417, 419, 751
SaqAI TTAA 2 cut(s) 104, 788
SatI GCNGC 4 cut(s) 126, 129, 831, 860
Sau3AI GATC 5 cut(s) 233, 273, 472, 793, 935
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 2 cut(s) 581, 673
ScrFI CCNGG 2 cut(s) 116, 431
SfaNI GCATC 2 cut(s) 69, 817
SfcI CTRYAG 1 cut(s) 703
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 3 cut(s) 417, 419, 751
SmlI CTYRAG 1 cut(s) 342
SmoI CTYRAG 1 cut(s) 342
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 5 cut(s) 136, 455, 522, 549, 781
SseBI AGGCCT 1 cut(s) 485
SsiI CCGC 2 cut(s) 756, 831
SspI AATATT 1 cut(s) 260
SspMI CTAG 3 cut(s) 768, 824, 946
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 2 cut(s) 114, 429
StyI CCWWGG 2 cut(s) 120, 910
TaaI ACNGT 2 cut(s) 319, 887
TaiI ACGT 2 cut(s) 164, 178
TaqI TCGA 7 cut(s) 213, 219, 276, 366, 372, 850, 934
TasI AATT 5 cut(s) 136, 455, 522, 549, 781
TauI GCSGC 1 cut(s) 833
TfiI GAWTC 1 cut(s) 847
Tru1I TTAA 2 cut(s) 104, 788
Tru9I TTAA 2 cut(s) 104, 788
TscAI CASTG 3 cut(s) 81, 328, 700
TseFI GTSAC 2 cut(s) 319, 760
TseI GCWGC 3 cut(s) 125, 128, 859
Tsp45I GTSAC 2 cut(s) 319, 760
TspDTI ATGAA 5 cut(s) 26, 270, 375, 735, 859
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 3 cut(s) 81, 328, 700
Van91I CCANNNNNTGG 1 cut(s) 627
VpaK11BI GGWCC 1 cut(s) 347
XbaI TCTAGA 1 cut(s) 823
XceI RCATGY 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 876
XspI CTAG 3 cut(s) 768, 824, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.