Rmu_co8363165.1_g000001

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8363165.1
Physical Location & Seq
Forward (+)
1 .. 1086
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8363165.1_g000001.1.cds

Sequence Viewer

Length: 848 bp
tattcatcacctctcttctagccatcactgcctcagctggtaatttttttcaagactttgacattacatttggcgatcaacgcgctaagatactcgaaggaggacagtttctcactctcaacctcgacaagtattctgggtctggtttcaaatccaagaacgagtacttattcggaaggatcgacatgcaaatcaagctcgtgcctggtaactcggctggcactgtcactacatactatttatcctctgaaggtccaactcatgatgaaatcgacttcgagtttttgggcaactcatctggagatccctacactctccacaccaatgtgttcagtcagggcaaaggggacagagaacaacaattccatctttggtttgatcccacaacggccttccacacctactcatttgtctggaactcccaacgcattatattctttgtcgacaacattccaatccgagtgttcaacaacatggaatcatttggtgttccattccctaaaaaccagccaatgaggatttactcgagtctgtggaatgccgacgactgggctacacaaggcgggcgtgtgaagactgactggacgcaagctcctttcactgcttcgtatcgaaacttcaaggccaatgcttgtgttgctggatcctcctcctcctcctgcggtgtcgccaccgttgcatcgactgataagacacagcagagtgcatggcagactcaaacgcttgatgctgcagggcgaaataggcttcgatgggtgcaacaaaagttcatggtgtacaactactgctctgaccttaaaagattcccccaaggccttccggtcgaatgcaagcgatcaaggttctag

Protein Analysis

281

Amino Acids

31.8

Weight (kDa)

8.32

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 443
AccII CGCG 1 cut(s) 83
AciI CCGC 2 cut(s) 563, 662
AclWI GGATC 5 cut(s) 187, 298, 373, 638, 651
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 2 cut(s) 166, 778
AfiI CCNNNNNNNGG 1 cut(s) 548
AgsI TTSAA 4 cut(s) 52, 150, 468, 621
AjnI CCWGG 1 cut(s) 204
AleI CACNNNNGTG 1 cut(s) 325
AloI GAACNNNNNNTCC 2 cut(s) 347, 379
AluBI AGCT 3 cut(s) 37, 198, 592
AluI AGCT 3 cut(s) 37, 198, 592
AlwI GGATC 5 cut(s) 187, 298, 373, 638, 651
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 3 cut(s) 389, 623, 813
ApeKI GCWGC 1 cut(s) 730
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 525
AvaII GGWCC 1 cut(s) 253
BamHI GGATCC 1 cut(s) 643
BarI GAAGNNNNNNTAC 2 cut(s) 601, 633
BauI CACGAG 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 580
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 717
BccI CCATC 3 cut(s) 31, 374, 746
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 1 cut(s) 206
BfaI CTAG 2 cut(s) 19, 846
BfmI CTRYAG 1 cut(s) 731
BisI GCNGC 1 cut(s) 731
BlsI GCNGC 1 cut(s) 732
BmcAI AGTACT 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 525
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 645
BmrFI CCNGG 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 558
BmsI GCATC 2 cut(s) 688, 717
BmuI ACTGGG 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 580
BpmI CTGGAG 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 810
BsaWI WCCGGW 1 cut(s) 819
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse1I ACTGG 2 cut(s) 553, 586
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 810
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 2 cut(s) 553, 586
BseRI GAGGAG 3 cut(s) 639, 642, 645
BseXI GCAGC 1 cut(s) 717
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 824
BshFI GGCC 3 cut(s) 391, 625, 815
BsiEI CGRYCG 1 cut(s) 824
BsiHKCI CYCGRG 1 cut(s) 525
BsiSI CCGG 1 cut(s) 820
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 548
BsmFI GGGAC 1 cut(s) 361
BsmI GAATGC 2 cut(s) 543, 832
BsnI GGCC 3 cut(s) 391, 625, 815
BsoBI CYCGRG 1 cut(s) 525
Bsp1407I TGTACA 1 cut(s) 776
Bsp143I GATC 6 cut(s) 75, 179, 303, 378, 643, 835
BspACI CCGC 2 cut(s) 563, 662
BspANI GGCC 3 cut(s) 391, 625, 815
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 83
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 645
BspMAI CTGCAG 1 cut(s) 735
BspPI GGATC 5 cut(s) 187, 298, 373, 638, 651
BsrGI TGTACA 1 cut(s) 776
BsrI ACTGG 2 cut(s) 553, 586
BssECI CCNNGG 1 cut(s) 810
BssMI GATC 6 cut(s) 75, 179, 303, 378, 643, 835
BssSI CACGAG 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 810
Bst2BI CACGAG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 3 cut(s) 107, 225, 675
Bst6I CTCTTC 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 776
BstC8I GCNNGC 4 cut(s) 219, 565, 590, 832
BstDEI CTNAG 2 cut(s) 33, 86
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 6 cut(s) 78, 182, 306, 381, 646, 838
BstMBI GATC 6 cut(s) 75, 179, 303, 378, 643, 835
BstMCI CGRYCG 1 cut(s) 824
BstMWI GCNNNNNNNGC 6 cut(s) 28, 80, 195, 637, 676, 744
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 731
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 717
BstV2I GAAGAC 1 cut(s) 580
BstX2I RGATCY 2 cut(s) 303, 643
BstYI RGATCY 2 cut(s) 303, 643
BsuRI GGCC 3 cut(s) 391, 625, 815
BtsI GCAGTG 2 cut(s) 26, 599
BtsIMutI CAGTG 3 cut(s) 26, 221, 599
Cac8I GCNNGC 4 cut(s) 219, 565, 590, 832
CciI TCATGA 1 cut(s) 261
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 253
CseI GACGC 1 cut(s) 594
Csp6I GTAC 2 cut(s) 165, 777
CviAII CATG 5 cut(s) 186, 262, 474, 707, 771
CviQI GTAC 2 cut(s) 165, 777
DdeI CTNAG 2 cut(s) 33, 86
DpnI GATC 6 cut(s) 77, 181, 305, 380, 645, 837
DpnII GATC 6 cut(s) 75, 179, 303, 378, 643, 835
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 810
Eco147I AGGCCT 1 cut(s) 815
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 810
ErhI CCWWGG 1 cut(s) 810
FaeI CATG 5 cut(s) 189, 265, 477, 710, 774
FaiI YATR 7 cut(s) 187, 234, 263, 433, 475, 708, 772
FaqI GGGAC 1 cut(s) 361
FatI CATG 5 cut(s) 185, 261, 473, 706, 770
FauI CCCGC 1 cut(s) 556
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 1 cut(s) 731
Fsp4HI GCNGC 1 cut(s) 731
FspBI CTAG 2 cut(s) 19, 846
GlaI GCGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 731
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 3 cut(s) 391, 625, 815
HapII CCGG 1 cut(s) 820
HgaI GACGC 1 cut(s) 594
HhaI GCGC 1 cut(s) 85
Hin1II CATG 5 cut(s) 189, 265, 477, 710, 774
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 4 cut(s) 478, 528, 714, 803
HpaII CCGG 1 cut(s) 820
Hpy166II GTNNAC 2 cut(s) 444, 777
Hpy188I TCNGA 4 cut(s) 175, 249, 460, 792
Hpy188III TCNNGA 4 cut(s) 52, 262, 299, 414
Hpy8I GTNNAC 2 cut(s) 444, 777
Hpy99I CGWCG 1 cut(s) 547
HpyAV CCTTC 5 cut(s) 91, 170, 244, 402, 826
HpyCH4III ACNGT 3 cut(s) 107, 225, 675
HpyCH4V TGCA 6 cut(s) 189, 679, 706, 733, 759, 830
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 80, 195, 637, 676, 744
HpyF3I CTNAG 2 cut(s) 33, 86
Hsp92II CATG 5 cut(s) 189, 265, 477, 710, 774
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 6 cut(s) 75, 179, 303, 378, 643, 835
LmnI GCTCC 1 cut(s) 597
Lsp1109I GCAGC 1 cut(s) 717
LweI GCATC 2 cut(s) 688, 717
MaeI CTAG 2 cut(s) 19, 846
MaeIII GTNAC 2 cut(s) 208, 225
MalI GATC 6 cut(s) 77, 181, 305, 380, 645, 837
MboI GATC 6 cut(s) 75, 179, 303, 378, 643, 835
MboII GAAGA 2 cut(s) 7, 585
MflI RGATCY 2 cut(s) 303, 643
MluCI AATT 2 cut(s) 42, 361
MlyI GAGTC 2 cut(s) 537, 708
MmeI TCCRAC 1 cut(s) 280
MseI TTAA 1 cut(s) 797
MslI CAYNNNNRTG 2 cut(s) 323, 325
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 1 cut(s) 820
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 2 cut(s) 543, 832
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 6 cut(s) 28, 80, 195, 637, 676, 744
NdeII GATC 6 cut(s) 75, 179, 303, 378, 643, 835
NlaIII CATG 5 cut(s) 189, 265, 477, 710, 774
NlaIV GGNNCC 1 cut(s) 645
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 225
NspI RCATGY 1 cut(s) 189
OliI CACNNNNGTG 1 cut(s) 325
PaeR7I CTCGAG 1 cut(s) 525
PagI TCATGA 1 cut(s) 261
PceI AGGCCT 1 cut(s) 815
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PctI GAATGC 2 cut(s) 543, 832
PfeI GAWTC 2 cut(s) 478, 803
PkrI GCNGC 1 cut(s) 732
PleI GAGTC 2 cut(s) 536, 708
PpsI GAGTC 2 cut(s) 536, 708
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 645
PspPI GGNCC 1 cut(s) 253
PspXI VCTCGAGB 1 cut(s) 525
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 2 cut(s) 303, 643
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 2 cut(s) 166, 778
RsaNI GTAC 2 cut(s) 165, 777
RseI CAYNNNNRTG 2 cut(s) 323, 325
SalI GTCGAC 1 cut(s) 442
SaqAI TTAA 1 cut(s) 797
SatI GCNGC 1 cut(s) 731
Sau3AI GATC 6 cut(s) 75, 179, 303, 378, 643, 835
Sau96I GGNCC 1 cut(s) 253
ScaI AGTACT 1 cut(s) 166
SchI GAGTC 2 cut(s) 537, 708
ScrFI CCNGG 1 cut(s) 206
SetI ASST 9 cut(s) 13, 39, 125, 200, 255, 403, 594, 797, 844
SfaNI GCATC 2 cut(s) 688, 717
SfcI CTRYAG 1 cut(s) 731
Sfr274I CTCGAG 1 cut(s) 525
SinI GGWCC 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 525
SmiMI CAYNNNNRTG 2 cut(s) 323, 325
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 2 cut(s) 42, 361
SseBI AGGCCT 1 cut(s) 815
SsiI CCGC 2 cut(s) 563, 662
SspMI CTAG 2 cut(s) 19, 846
StuI AGGCCT 1 cut(s) 815
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 810
TaaI ACNGT 3 cut(s) 107, 225, 675
TasI AATT 2 cut(s) 42, 361
TatI WGTACW 2 cut(s) 164, 776
TfiI GAWTC 2 cut(s) 478, 803
Tru1I TTAA 1 cut(s) 797
Tru9I TTAA 1 cut(s) 797
TscAI CASTG 3 cut(s) 33, 228, 606
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 1 cut(s) 730
Tsp45I GTSAC 1 cut(s) 225
TspDTI ATGAA 2 cut(s) 281, 759
TspRI CASTG 3 cut(s) 33, 228, 606
VpaK11BI GGWCC 1 cut(s) 253
XceI RCATGY 1 cut(s) 189
XhoI CTCGAG 1 cut(s) 525
XmiI GTMKAC 1 cut(s) 443
XspI CTAG 2 cut(s) 19, 846
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.