Rmu_sc0043125.1_g000001

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0043125.1
Physical Location & Seq
Reverse (-)
634 .. 1698
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0043125.1_g000001.1.cds

Sequence Viewer

Length: 870 bp
atgctttgcctctctgctgttttgttaagttctttcatggccatggctgcagccggtaatttctatcaagactttgacatcacattcggcgaacaacgtgctaagatattcaacggaggacagcatctcacactcgacctcgaccagtattccggatctggtttcaagtccaagaaggagtacttgtttggaaggatcgacatgcaaatcaaacttgtcgctggcaactcagctggcactgtcactgcatattatttgtcttctcaaggtccaactcatgatgaaatcgattttgagtttttgggaaactcttctggtgaaccctacactctccacaccaatgtgttcagccaggggaaagggaacagagaacaacaattccatctttggtttgatcctacaaacgccttccatacctactcgcttgtctggaacagccaacgcattatattcttggtggataatattccaattagagtgttcaacaacttggagtcagttggtgttccattccccaaaaaccaaccgatgaggatttactcgagcctgtggaatgctgatgactgggctacacaaggtgggcgtgtgaagactgactggactcacgctcctttcactgcctcgtacagaaacttcaaggccaatgcttgcgtcgctggctcatcgtcatcatcatgcggtgtctccacttctgcttcaactaattccttaactgatcaacagggtacatggcacaatcaaggtctagatgccgcaggccgaaacaggataagatgggtgcagcagaagttcatggtctacaactactgtactgacctaaaacgatttccccaaggtcttccggtggaatgtagacgatcaaggttctag

Protein Analysis

289

Amino Acids

32.53

Weight (kDa)

8.54

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 798, 853
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 2 cut(s) 678, 753
AclWI GGATC 3 cut(s) 163, 203, 389
AcoI YGGCCR 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 578
AfaI GTAC 4 cut(s) 182, 626, 727, 811
AgsI TTSAA 5 cut(s) 112, 166, 484, 637, 699
AjnI CCWGG 1 cut(s) 351
AleI CACNNNNGTG 1 cut(s) 341
AloI GAACNNNNNNTCC 2 cut(s) 363, 395
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 688
AlwI GGATC 3 cut(s) 163, 203, 389
Ama87I CYCGRG 1 cut(s) 541
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 3 cut(s) 39, 639, 757
ApeKI GCWGC 3 cut(s) 47, 50, 781
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
Asp700I GAANNNNTTC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 541
AvaII GGWCC 1 cut(s) 269
BalI TGGCCA 1 cut(s) 41
BarI GAAGNNNNNNTAC 2 cut(s) 617, 649
BbsI GAAGAC 3 cut(s) 252, 596, 830
BbvI GCAGC 3 cut(s) 34, 62, 793
BccI CCATC 2 cut(s) 390, 768
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 353
BclI TGATCA 1 cut(s) 715
BcoDI GTCTC 1 cut(s) 688
BfaI CTAG 2 cut(s) 746, 868
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 4 cut(s) 48, 51, 753, 782
BlsI GCNGC 4 cut(s) 49, 52, 754, 783
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 353
BmrI ACTGGG 1 cut(s) 574
BmsI GCATC 2 cut(s) 133, 739
BmuI ACTGGG 1 cut(s) 574
BpiI GAAGAC 3 cut(s) 252, 596, 830
BpuEI CTTGAG 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 42, 352, 832
BsaWI WCCGGW 2 cut(s) 152, 841
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 592, 622
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 3 cut(s) 145, 569, 602
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 1 cut(s) 353
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 3 cut(s) 42, 352, 832
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 3 cut(s) 145, 569, 602
BseXI GCAGC 3 cut(s) 34, 62, 793
BsgI GTGCAG 1 cut(s) 800
BshFI GGCC 3 cut(s) 41, 641, 759
BshVI ATCGAT 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 3 cut(s) 54, 153, 842
BsmAI GTCTC 1 cut(s) 688
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 3 cut(s) 41, 641, 759
BsoBI CYCGRG 1 cut(s) 541
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 5 cut(s) 155, 195, 394, 715, 857
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 2 cut(s) 678, 753
BspANI GGCC 3 cut(s) 41, 641, 759
BspCNI CTCAG 1 cut(s) 242
BspDI ATCGAT 1 cut(s) 288
BspEI TCCGGA 1 cut(s) 152
BspHI TCATGA 1 cut(s) 277
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 3 cut(s) 163, 203, 389
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 3 cut(s) 145, 569, 602
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 42, 352, 832
BssMI GATC 5 cut(s) 155, 195, 394, 715, 857
BssT1I CCWWGG 2 cut(s) 42, 832
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 241, 809
Bst6I CTCTTC 1 cut(s) 316
BstC8I GCNNGC 5 cut(s) 223, 235, 649, 658, 757
BstDEI CTNAG 2 cut(s) 102, 229
BstDSI CCRYGG 1 cut(s) 42
BstKTI GATC 5 cut(s) 158, 198, 397, 718, 860
BstMAI GTCTC 1 cut(s) 688
BstMBI GATC 5 cut(s) 155, 195, 394, 715, 857
BstMWI GCNNNNNNNGC 3 cut(s) 47, 653, 657
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 3 cut(s) 34, 62, 793
BstV2I GAAGAC 3 cut(s) 252, 596, 830
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 3 cut(s) 41, 641, 759
BsuTUI ATCGAT 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 42
BtsI GCAGTG 2 cut(s) 243, 615
BtsIMutI CAGTG 3 cut(s) 237, 243, 615
Cac8I GCNNGC 5 cut(s) 223, 235, 649, 658, 757
CciI TCATGA 1 cut(s) 277
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 269
ClaI ATCGAT 1 cut(s) 288
CseI GACGC 1 cut(s) 640
Csp6I GTAC 4 cut(s) 181, 625, 726, 810
CviAII CATG 7 cut(s) 37, 43, 202, 278, 675, 729, 793
CviQI GTAC 4 cut(s) 181, 625, 726, 810
DdeI CTNAG 2 cut(s) 102, 229
DpnI GATC 5 cut(s) 157, 197, 396, 717, 859
DpnII GATC 5 cut(s) 155, 195, 394, 715, 857
DraIII CACNNNGTG 1 cut(s) 578
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Eco130I CCWWGG 2 cut(s) 42, 832
Eco47I GGWCC 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 2 cut(s) 42, 832
ErhI CCWWGG 2 cut(s) 42, 832
FaeI CATG 7 cut(s) 40, 46, 205, 281, 678, 732, 796
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 7 cut(s) 36, 42, 201, 277, 674, 728, 792
FbaI TGATCA 1 cut(s) 715
FblI GTMKAC 2 cut(s) 798, 853
Fnu4HI GCNGC 4 cut(s) 48, 51, 753, 782
Fsp4HI GCNGC 4 cut(s) 48, 51, 753, 782
FspBI CTAG 2 cut(s) 746, 868
GluI GCNGC 4 cut(s) 48, 51, 753, 782
HaeIII GGCC 3 cut(s) 41, 641, 759
HapII CCGG 3 cut(s) 54, 153, 842
HgaI GACGC 1 cut(s) 640
Hin1II CATG 7 cut(s) 40, 46, 205, 281, 678, 732, 796
HinfI GANTC 2 cut(s) 494, 601
HpaII CCGG 3 cut(s) 54, 153, 842
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 3 cut(s) 320, 799, 854
Hpy188III TCNNGA 5 cut(s) 68, 153, 278, 430, 746
Hpy8I GTNNAC 3 cut(s) 320, 799, 854
Hpy99I CGWCG 1 cut(s) 656
HpyAV CCTTC 3 cut(s) 169, 186, 418
HpyCH4III ACNGT 2 cut(s) 241, 809
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 50, 205, 248, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 653, 657
HpyF3I CTNAG 2 cut(s) 102, 229
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 7 cut(s) 40, 46, 205, 281, 678, 732, 796
Kpn2I TCCGGA 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 5 cut(s) 155, 195, 394, 715, 857
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 3 cut(s) 34, 62, 793
LweI GCATC 2 cut(s) 133, 739
MaeI CTAG 2 cut(s) 746, 868
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 241
MalI GATC 5 cut(s) 157, 197, 396, 717, 859
MboI GATC 5 cut(s) 155, 195, 394, 715, 857
MboII GAAGA 4 cut(s) 252, 303, 601, 830
MflI RGATCY 1 cut(s) 155
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 4 cut(s) 58, 377, 471, 703
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 2 cut(s) 503, 595
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 5 cut(s) 20, 110, 149, 525, 631
Mox20I TGGCCA 1 cut(s) 41
MroI TCCGGA 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 41
MseI TTAA 2 cut(s) 26, 710
MslI CAYNNNNRTG 4 cut(s) 41, 339, 341, 673
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 3 cut(s) 54, 153, 842
MspR9I CCNGG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 47, 653, 657
NcoI CCATGG 1 cut(s) 42
NdeII GATC 5 cut(s) 155, 195, 394, 715, 857
NlaIII CATG 7 cut(s) 40, 46, 205, 281, 678, 732, 796
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 205
OliI CACNNNNGTG 1 cut(s) 341
PaeR7I CTCGAG 1 cut(s) 541
PagI TCATGA 1 cut(s) 277
PctI GAATGC 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 310
PkrI GCNGC 4 cut(s) 49, 52, 754, 783
PleI GAGTC 2 cut(s) 502, 595
PpsI GAGTC 2 cut(s) 502, 595
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspPI GGNCC 1 cut(s) 269
PspXI VCTCGAGB 1 cut(s) 541
PstI CTGCAG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 4 cut(s) 182, 626, 727, 811
RsaNI GTAC 4 cut(s) 181, 625, 726, 810
RseI CAYNNNNRTG 4 cut(s) 41, 339, 341, 673
SaqAI TTAA 2 cut(s) 26, 710
SatI GCNGC 4 cut(s) 48, 51, 753, 782
Sau3AI GATC 5 cut(s) 155, 195, 394, 715, 857
Sau96I GGNCC 1 cut(s) 269
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 2 cut(s) 503, 595
ScrFI CCNGG 1 cut(s) 353
SfaNI GCATC 2 cut(s) 133, 739
SfcI CTRYAG 1 cut(s) 48
Sfr274I CTCGAG 1 cut(s) 541
SinI GGWCC 1 cut(s) 269
SlaI CTCGAG 1 cut(s) 541
SmiMI CAYNNNNRTG 4 cut(s) 41, 339, 341, 673
SmlI CTYRAG 2 cut(s) 264, 541
SmoI CTYRAG 2 cut(s) 264, 541
Sse9I AATT 4 cut(s) 58, 377, 471, 703
SsiI CCGC 2 cut(s) 678, 753
SspI AATATT 1 cut(s) 466
SspMI CTAG 2 cut(s) 746, 868
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 2 cut(s) 42, 832
TaaI ACNGT 2 cut(s) 241, 809
TaiI ACGT 1 cut(s) 100
TaqI TCGA 5 cut(s) 135, 141, 198, 288, 542
TasI AATT 4 cut(s) 58, 377, 471, 703
TatI WGTACW 2 cut(s) 180, 809
TauI GCSGC 1 cut(s) 755
Tru1I TTAA 2 cut(s) 26, 710
Tru9I TTAA 2 cut(s) 26, 710
TscAI CASTG 3 cut(s) 244, 250, 622
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 3 cut(s) 47, 50, 781
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 3 cut(s) 25, 297, 781
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 3 cut(s) 244, 250, 622
VpaK11BI GGWCC 1 cut(s) 269
XbaI TCTAGA 1 cut(s) 745
XceI RCATGY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 541
XmiI GTMKAC 2 cut(s) 798, 853
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 2 cut(s) 746, 868
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.