Prupe.3G171500_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
19015317 .. 19016455
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G171500.1

Sequence Viewer

Length: 858 bp
ATGTCTTCTTGTTCTGAGGTCTCAATGGTGCTTGTTGTTTCTTTGTTTGTAACTTCTCTGATGGCCTTGACTGCCTCAGCTGGTAATTTCTATCAAGACTTCGACATCACATTCGGAGGCGAACGGGCTAAGATACTCAACGGAGGACAGCTTCTCACTCTTAACCTTGACAAGTTTTCTGGGTCTGGTTTCAAATCCAAGAATGAGTACTTGTTTGGAAGAATTGACATGCAGATCAAGTTGGTCTCTGGCAACTCAGCTGGCACTGTCACTGCATACTATTTATCTTCTGAAGGTCCAACTCATGATGAGATTGACTTTGAGTTTTTGGGCAACTTATCTGGAGACCCCTACACTCTCCATACCAATGTGTTCAGCCAAGGAAAAGGAAACAGAGAACAACAATTCCATCTGTGGTTTGATCCTACAAAAGCCTTCCACACCTACTCCATTGTCTGGAACTCTCAGCGCATCATATTCTTGGTAGACAACATTCCAATCAGAGTGTTCCACAACTTGGAAACAATTGGAGTTCCATTTCCCAAAAACCAACCCATGAGGATTTACTCAAGCCTCTGGAATGCTGATGACTGGGCAACAAGAGGTGGCCTTGTGAAGACTGACTGGACACAAGCTCCTTTCACTGCCTCTTACAGAAACTTCAAGGTCTCCACTACTACATCTACATCTACTAACTCCCTAACAGAGCAGAGTGAATGGCAGACTCAAGGGCTTGATGCTGCAGGCCGAAACCGGCTTCGATGGGTGCAACAAAAGTTCATGGTCTACAACTACTGTTCTGACCTCAAACGCTTCCCACAAGGCCTCCCAGTTGAATGCAGACGATCAAGGTTCTAG

Protein Analysis

286

Amino Acids

32.33

Weight (kDa)

8.36

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 456, 517
AccI GTMKAC 2 cut(s) 486, 786
AclWI GGATC 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 456, 517
AgsI TTSAA 3 cut(s) 193, 664, 836
AloI GAACNNNNNNTCC 2 cut(s) 390, 422
AluBI AGCT 4 cut(s) 80, 151, 260, 635
AluI AGCT 4 cut(s) 80, 151, 260, 635
Alw26I GTCTC 4 cut(s) 25, 250, 339, 673
AlwI GGATC 1 cut(s) 416
AoxI GGCC 4 cut(s) 63, 607, 745, 823
ApeKI GCWGC 1 cut(s) 740
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 296
AvaII GGWCC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 623
BbvCI CCTCAGC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 727
BccI CCATC 3 cut(s) 55, 417, 756
BcoDI GTCTC 4 cut(s) 25, 250, 339, 673
BfaI CTAG 1 cut(s) 856
BfmI CTRYAG 1 cut(s) 741
BisI GCNGC 1 cut(s) 741
BlsI GCNGC 1 cut(s) 742
BmcAI AGTACT 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmrI ACTGGG 2 cut(s) 601, 824
BmsI GCATC 2 cut(s) 480, 727
BmuI ACTGGG 2 cut(s) 601, 824
BpiI GAAGAC 1 cut(s) 623
BpmI CTGGAG 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 76
BpuEI CTTGAG 2 cut(s) 553, 711
BsaI GGTCTC 4 cut(s) 25, 250, 339, 673
BsaJI CCNNGG 1 cut(s) 379
BsaXI ACNNNNNCTCC 6 cut(s) 431, 461, 619, 649, 810, 840
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 517
Bse118I RCCGGY 1 cut(s) 753
Bse1I ACTGG 3 cut(s) 596, 629, 830
BseDI CCNNGG 1 cut(s) 379
BseLI CCNNNNNNNGG 2 cut(s) 456, 517
BseMII CTCAG 4 cut(s) 6, 90, 270, 479
BseNI ACTGG 3 cut(s) 596, 629, 830
BseXI GCAGC 1 cut(s) 727
BshFI GGCC 4 cut(s) 65, 609, 747, 825
BsiSI CCGG 1 cut(s) 754
BslI CCNNNNNNNGG 2 cut(s) 456, 517
BsmAI GTCTC 4 cut(s) 25, 250, 339, 673
BsmI GAATGC 2 cut(s) 586, 842
BsnI GGCC 4 cut(s) 65, 609, 747, 825
Bso31I GGTCTC 4 cut(s) 25, 250, 339, 673
Bsp143I GATC 3 cut(s) 234, 421, 845
BspANI GGCC 4 cut(s) 65, 609, 747, 825
BspCNI CTCAG 4 cut(s) 7, 89, 269, 478
BspHI TCATGA 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 745
BspPI GGATC 1 cut(s) 416
BspTNI GGTCTC 4 cut(s) 25, 250, 339, 673
BsrFI RCCGGY 1 cut(s) 753
BsrI ACTGG 3 cut(s) 596, 629, 830
BssAI RCCGGY 1 cut(s) 753
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 3 cut(s) 234, 421, 845
BssT1I CCWWGG 1 cut(s) 379
Bst4CI ACNGT 2 cut(s) 268, 797
BstC8I GCNNGC 2 cut(s) 262, 745
BstDEI CTNAG 5 cut(s) 15, 76, 129, 256, 465
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 3 cut(s) 237, 424, 848
BstMAI GTCTC 4 cut(s) 25, 250, 339, 673
BstMBI GATC 3 cut(s) 234, 421, 845
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 741
BstV1I GCAGC 1 cut(s) 727
BstV2I GAAGAC 1 cut(s) 623
BsuRI GGCC 4 cut(s) 65, 609, 747, 825
BtsI GCAGTG 2 cut(s) 270, 642
BtsIMutI CAGTG 3 cut(s) 264, 270, 642
Cac8I GCNNGC 2 cut(s) 262, 745
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 471
Cfr10I RCCGGY 1 cut(s) 753
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 208
CviAII CATG 4 cut(s) 229, 305, 556, 781
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 5 cut(s) 15, 76, 129, 256, 465
DpnI GATC 3 cut(s) 236, 423, 847
DpnII GATC 3 cut(s) 234, 421, 845
Eco130I CCWWGG 1 cut(s) 379
Eco147I AGGCCT 1 cut(s) 825
Eco31I GGTCTC 4 cut(s) 25, 250, 339, 673
Eco47I GGWCC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 4 cut(s) 232, 308, 559, 784
FaiI YATR 7 cut(s) 230, 277, 306, 363, 476, 557, 782
FatI CATG 4 cut(s) 228, 304, 555, 780
FblI GTMKAC 2 cut(s) 486, 786
Fnu4HI GCNGC 1 cut(s) 741
Fsp4HI GCNGC 1 cut(s) 741
FspBI CTAG 1 cut(s) 856
GlaI GCGC 1 cut(s) 470
GluI GCNGC 1 cut(s) 741
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 4 cut(s) 65, 609, 747, 825
HapII CCGG 1 cut(s) 754
HhaI GCGC 1 cut(s) 471
Hin1II CATG 4 cut(s) 232, 308, 559, 784
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HinfI GANTC 1 cut(s) 724
HpaII CCGG 1 cut(s) 754
Hpy166II GTNNAC 2 cut(s) 487, 787
Hpy188I TCNGA 6 cut(s) 16, 60, 116, 292, 503, 802
Hpy188III TCNNGA 5 cut(s) 95, 305, 342, 457, 577
Hpy8I GTNNAC 2 cut(s) 487, 787
HpyAV CCTTC 2 cut(s) 287, 445
HpyCH4III ACNGT 2 cut(s) 268, 797
HpyCH4V TGCA 5 cut(s) 232, 275, 743, 769, 840
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 5 cut(s) 15, 76, 129, 256, 465
Hsp92II CATG 4 cut(s) 232, 308, 559, 784
HspAI GCGC 1 cut(s) 469
Kzo9I GATC 3 cut(s) 234, 421, 845
LmnI GCTCC 1 cut(s) 640
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 2 cut(s) 480, 727
MaeI CTAG 1 cut(s) 856
MaeIII GTNAC 2 cut(s) 49, 268
MalI GATC 3 cut(s) 236, 423, 847
MboI GATC 3 cut(s) 234, 421, 845
MboII GAAGA 3 cut(s) 231, 279, 628
MfeI CAATTG 1 cut(s) 525
MluCI AATT 4 cut(s) 85, 222, 404, 525
MlyI GAGTC 1 cut(s) 718
MmeI TCCRAC 1 cut(s) 323
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 366
MspA1I CMGCKG 2 cut(s) 80, 260
MspI CCGG 1 cut(s) 754
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 2 cut(s) 586, 842
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 3 cut(s) 234, 421, 845
NlaIII CATG 4 cut(s) 232, 308, 559, 784
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 232
PagI TCATGA 1 cut(s) 304
PceI AGGCCT 1 cut(s) 825
PctI GAATGC 2 cut(s) 586, 842
PflMI CCANNNNNTGG 2 cut(s) 456, 517
PkrI GCNGC 1 cut(s) 742
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
PspPI GGNCC 1 cut(s) 296
PstI CTGCAG 1 cut(s) 745
PvuII CAGCTG 2 cut(s) 80, 260
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 3 cut(s) 234, 421, 845
Sau96I GGNCC 1 cut(s) 296
ScaI AGTACT 1 cut(s) 209
SchI GAGTC 1 cut(s) 718
SfaNI GCATC 2 cut(s) 480, 727
SfcI CTRYAG 1 cut(s) 741
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 2 cut(s) 568, 726
SmoI CTYRAG 2 cut(s) 568, 726
Sse9I AATT 4 cut(s) 85, 222, 404, 525
SseBI AGGCCT 1 cut(s) 825
SspMI CTAG 1 cut(s) 856
StuI AGGCCT 1 cut(s) 825
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 2 cut(s) 268, 797
TaqI TCGA 2 cut(s) 102, 760
TasI AATT 4 cut(s) 85, 222, 404, 525
TatI WGTACW 1 cut(s) 207
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 3 cut(s) 271, 277, 649
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 769
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 3 cut(s) 271, 277, 649
Van91I CCANNNNNTGG 2 cut(s) 456, 517
VpaK11BI GGWCC 1 cut(s) 296
XceI RCATGY 1 cut(s) 232
XmiI GTMKAC 2 cut(s) 486, 786
XspI CTAG 1 cut(s) 856
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.