Rroxscaffold_2G00096490

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
17711404 .. 17712928
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096490.1

Sequence Viewer

Length: 783 bp
ATGTCTTCTTCTAAGGTCTCCATGATGCTTCTAATGCTTTCTCTGGCCTCAAGTAGTCATCTGTTAATGGCTACCTCATCAGCTGGTGATTTCTTCCGAGACATTGATGTTACTTTTGGCGATCAACGTGCTAAGATACTCGACGGAGGACAACTACTCACGCTCAGCCTTGACAAGATTTCTGGGTCTGGCTTCAAGTCTAAGAATGAGTACTTGTTTGGTAGGATCGACATGCAAATAAAGCTCGTGCCTGGTAACTCAGCTGGCACTGTCACCACATACTATGGCAAAGGGGAAAGAGAGCAACAATTCCATCTTTGGTTTGATCCCACAAAAGCCTTCCACACTTACTCCATTCTTTGGAACACCCACCGCATTCTGTTTTTCGTGGACAACATTCCAATTAGGGTGTTCGACAATTTGGAATCAATTGGGGTTCCATTCCCCAAAAAGCAACCAATGAGGATTTACTCAAGTTTGTGGAATGCTGACGACTGGGCAACACAAGGTGGTCTTGTGAAGACAGACTGGGCACAAGCTCCTTTCACTGCCTCTTACAGGAACTTAAAGGCCAATGCTTGTCTTGCTGGCTCATCATCGTCATCATCTAGTTGTGTCTCCACTGCAGCAGAGGACAAATCATGGCAGAACCAAGCGCTTGATGCTGCAGGTAGAAAGAGGCTTCGATGGGTGCAAAAGAAGTTCATGGTTTACAACTACTGTTCTGATCGTAAACGATTCCCGCAAGGTTTTCCACTGGAATGCAAGCGGTCAAGGTTCTAG

Protein Analysis

260

Amino Acids

29.34

Weight (kDa)

9.55

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 34 - 95 3.8e-11 Glycosyl hydrolases family 16
Glyco_hydro_16 PF00722 96 - 178 1.2e-30 Glycosyl hydrolases family 16
XET_C PF06955 212 - 255 7.4e-21 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 659
AccB7I CCANNNNNTGG 1 cut(s) 360
AciI CCGC 3 cut(s) 373, 743, 769
AclWI GGATC 2 cut(s) 233, 320
AdeI CACNNNGTG 1 cut(s) 509
AfaI GTAC 1 cut(s) 212
AfeI AGCGCT 1 cut(s) 657
AfiI CCNNNNNNNGG 2 cut(s) 360, 558
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 4 cut(s) 83, 244, 263, 539
AluI AGCT 4 cut(s) 83, 244, 263, 539
Alw26I GTCTC 3 cut(s) 22, 93, 622
AlwI GGATC 2 cut(s) 233, 320
Aor51HI AGCGCT 1 cut(s) 657
AoxI GGCC 2 cut(s) 45, 570
ApeKI GCWGC 2 cut(s) 626, 665
AspLEI GCGC 1 cut(s) 658
AsuHPI GGTGA 2 cut(s) 98, 265
BaeGI GKGCMC 1 cut(s) 535
BauI CACGAG 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 527
BbvI GCAGC 2 cut(s) 638, 652
BccI CCATC 2 cut(s) 321, 681
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 3 cut(s) 22, 93, 622
BfaI CTAG 2 cut(s) 609, 781
BfmI CTRYAG 2 cut(s) 624, 666
BfoI RGCGCY 1 cut(s) 659
BfuAI ACCTGC 1 cut(s) 659
BisI GCNGC 2 cut(s) 627, 666
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 2 cut(s) 628, 667
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 252
BmrI ACTGGG 2 cut(s) 505, 538
BmsI GCATC 2 cut(s) 15, 652
BmuI ACTGGG 2 cut(s) 505, 538
BpiI GAAGAC 1 cut(s) 527
Bpu1102I GCTNAGC 1 cut(s) 164
BpuEI CTTGAG 2 cut(s) 34, 457
BsaI GGTCTC 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 360, 558
Bse1I ACTGG 3 cut(s) 500, 533, 762
BseBI CCWGG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 360, 558
BseMII CTCAG 2 cut(s) 178, 273
BseNI ACTGG 3 cut(s) 500, 533, 762
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 2 cut(s) 638, 652
BshFI GGCC 2 cut(s) 47, 572
BslI CCNNNNNNNGG 2 cut(s) 360, 558
BsmAI GTCTC 3 cut(s) 22, 93, 622
BsmI GAATGC 3 cut(s) 375, 490, 767
BsnI GGCC 2 cut(s) 47, 572
Bso31I GGTCTC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 4 cut(s) 121, 225, 325, 727
Bsp1720I GCTNAGC 1 cut(s) 164
BspACI CCGC 3 cut(s) 373, 743, 769
BspANI GGCC 2 cut(s) 47, 572
BspCNI CTCAG 2 cut(s) 177, 272
BspLI GGNNCC 1 cut(s) 438
BspMAI CTGCAG 2 cut(s) 628, 670
BspMI ACCTGC 1 cut(s) 659
BspPI GGATC 2 cut(s) 233, 320
BspTNI GGTCTC 1 cut(s) 22
BsrI ACTGG 3 cut(s) 500, 533, 762
BssMI GATC 4 cut(s) 121, 225, 325, 727
BssSI CACGAG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 271, 722
BstC8I GCNNGC 3 cut(s) 265, 589, 767
BstDEI CTNAG 5 cut(s) 12, 132, 164, 201, 259
BstENI CCTNNNNNAGG 1 cut(s) 556
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 4 cut(s) 124, 228, 328, 730
BstMAI GTCTC 3 cut(s) 22, 93, 622
BstMBI GATC 4 cut(s) 121, 225, 325, 727
BstMWI GCNNNNNNNGC 4 cut(s) 34, 241, 584, 662
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 2 cut(s) 624, 666
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 2 cut(s) 638, 652
BstV2I GAAGAC 1 cut(s) 527
BsuRI GGCC 2 cut(s) 47, 572
BtsI GCAGTG 2 cut(s) 546, 621
BtsIMutI CAGTG 4 cut(s) 267, 546, 621, 755
BveI ACCTGC 1 cut(s) 659
Cac8I GCNNGC 3 cut(s) 265, 589, 767
CfoI GCGC 1 cut(s) 658
Csp6I GTAC 1 cut(s) 211
CviAII CATG 4 cut(s) 22, 232, 642, 706
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 5 cut(s) 12, 132, 164, 201, 259
DpnI GATC 4 cut(s) 123, 227, 327, 729
DpnII GATC 4 cut(s) 121, 225, 325, 727
DraIII CACNNNGTG 1 cut(s) 509
Eco31I GGTCTC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 657
EcoNI CCTNNNNNAGG 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 4 cut(s) 25, 235, 645, 709
FaiI YATR 6 cut(s) 23, 233, 280, 285, 643, 707
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FatI CATG 4 cut(s) 21, 231, 641, 705
FauI CCCGC 1 cut(s) 750
Fnu4HI GCNGC 2 cut(s) 627, 666
Fsp4HI GCNGC 2 cut(s) 627, 666
FspBI CTAG 2 cut(s) 609, 781
GlaI GCGC 1 cut(s) 657
GluI GCNGC 2 cut(s) 627, 666
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 2 cut(s) 47, 572
HhaI GCGC 1 cut(s) 658
Hin1II CATG 4 cut(s) 25, 235, 645, 709
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HinfI GANTC 2 cut(s) 425, 738
HphI GGTGA 2 cut(s) 98, 265
Hpy166II GTNNAC 3 cut(s) 391, 712, 734
Hpy188I TCNGA 2 cut(s) 98, 727
Hpy8I GTNNAC 3 cut(s) 391, 712, 734
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 2 cut(s) 271, 722
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 5 cut(s) 235, 626, 668, 694, 765
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 241, 584, 662
HpyF3I CTNAG 5 cut(s) 12, 132, 164, 201, 259
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 4 cut(s) 25, 235, 645, 709
HspAI GCGC 1 cut(s) 656
Kzo9I GATC 4 cut(s) 121, 225, 325, 727
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 2 cut(s) 638, 652
LweI GCATC 2 cut(s) 15, 652
MaeI CTAG 2 cut(s) 609, 781
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 3 cut(s) 109, 254, 271
MalI GATC 4 cut(s) 123, 227, 327, 729
MboI GATC 4 cut(s) 121, 225, 325, 727
MboII GAAGA 2 cut(s) 85, 532
MfeI CAATTG 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 4 cut(s) 308, 402, 418, 429
MnlI CCTC 7 cut(s) 58, 85, 140, 456, 562, 625, 672
MseI TTAA 2 cut(s) 65, 566
MslI CAYNNNNRTG 1 cut(s) 760
MspA1I CMGCKG 2 cut(s) 83, 263
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 429
Mva1269I GAATGC 3 cut(s) 375, 490, 767
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 4 cut(s) 34, 241, 584, 662
NdeII GATC 4 cut(s) 121, 225, 325, 727
NlaIII CATG 4 cut(s) 25, 235, 645, 709
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 235
PctI GAATGC 3 cut(s) 375, 490, 767
PfeI GAWTC 2 cut(s) 425, 738
PflMI CCANNNNNTGG 1 cut(s) 360
PkrI GCNGC 2 cut(s) 628, 667
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 438
PstI CTGCAG 2 cut(s) 628, 670
PvuII CAGCTG 2 cut(s) 83, 263
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 760
SaqAI TTAA 2 cut(s) 65, 566
SatI GCNGC 2 cut(s) 627, 666
Sau3AI GATC 4 cut(s) 121, 225, 325, 727
ScaI AGTACT 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 2 cut(s) 15, 652
SfcI CTRYAG 2 cut(s) 624, 666
SmiMI CAYNNNNRTG 1 cut(s) 760
SmlI CTYRAG 2 cut(s) 49, 472
SmoI CTYRAG 2 cut(s) 49, 472
Sse9I AATT 4 cut(s) 308, 402, 418, 429
SsiI CCGC 3 cut(s) 373, 743, 769
SspMI CTAG 2 cut(s) 609, 781
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 271, 722
TaiI ACGT 1 cut(s) 130
TaqI TCGA 4 cut(s) 141, 228, 414, 685
TasI AATT 4 cut(s) 308, 402, 418, 429
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 2 cut(s) 425, 738
Tru1I TTAA 2 cut(s) 65, 566
Tru9I TTAA 2 cut(s) 65, 566
TscAI CASTG 4 cut(s) 274, 553, 628, 762
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 626, 665
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 694
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 4 cut(s) 274, 553, 628, 762
Van91I CCANNNNNTGG 1 cut(s) 360
XagI CCTNNNNNAGG 1 cut(s) 556
XceI RCATGY 1 cut(s) 235
XspI CTAG 2 cut(s) 609, 781
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.