Prupe.3G172000_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
19032242 .. 19033358
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G172000.1

Sequence Viewer

Length: 858 bp
ATGCCTTTTTCTTCTTCTTGTTCTAAGGTCTCAATGGTGCTTGTGGTTTCTTTGTTTGTAACTTCTCTGATGGCCATGGCCGCCTCAGCTGGTAATTTCTTTCAAGACTTTGATGTAACATTCGGCGATGAGCGTGCTAAGATACTAAATGGAGGACAGCTTCTCACACTTAACCTTGACAAGGCTTCTGGGTCTGGTTTCAAATCCAAGAATGAGTACTTATTAGGCAGGATTGACATGCAGATCAAGTTGGTCTCTGGCAACTCAGCTGGCACTGTCACTGCATACTATTTATCTTCCGAGGGTCCAACTCATGATGAGATTGACTTTGAGTTTTTGGGAAACTTATCTGGAGATCCCTACACTCTCCACACAAACGTGTTCAGCCAAGGAAAAGGAAACAGAGAACAACAATTCCATCTCTGGTTTGATCCCACAAAGGCCTTCCACACCTACTCCATTGTCTGGAACAGCCAGCGGATTATATTCTTGGTGGACAACATTCCAATCAGAGTGTTCCACAACTTGGAAACAATTGGAGTTCCATTTCCCAAAAGCCAACCCATGAGGATTTACTCAAGCCTCTGGAATGCAGATGACTGGGCAACAAGAGGTGGCCTTGTGAAGACTGACTGGACACAAGCTCCTTTCACTGCCTCTTACAGAAACTTCCAGGCCTCCACCACATCTACTAACTCCTTAACAGAGCAGAGTGCATGGCAGACTCAAGGGCTTGATGCTGCAGGCCGAAACCGGCTTCGATGGGTGCAACAAAAGTTCATGGTCTACAACTACTGCTCTGACCTCAAACGCTTCCCACAAGGCCTCCCAGCTGAATGCAGACGGTCGAGGTTCTAG

Protein Analysis

286

Amino Acids

32.13

Weight (kDa)

8.7

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 465, 526
AccI GTMKAC 1 cut(s) 786
AciI CCGC 2 cut(s) 81, 478
AclWI GGATC 2 cut(s) 350, 425
AcoI YGGCCR 2 cut(s) 72, 78
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 3 cut(s) 181, 465, 526
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 2 cut(s) 104, 202
AjnI CCWGG 1 cut(s) 672
AleI CACNNNNGTG 1 cut(s) 377
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
AluBI AGCT 5 cut(s) 89, 160, 269, 644, 833
AluI AGCT 5 cut(s) 89, 160, 269, 644, 833
Alw26I GTCTC 2 cut(s) 34, 259
AlwI GGATC 2 cut(s) 350, 425
AoxI GGCC 7 cut(s) 72, 78, 441, 616, 675, 745, 823
ApeKI GCWGC 1 cut(s) 740
AspS9I GGNCC 1 cut(s) 305
AvaII GGWCC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 632
BbvCI CCTCAGC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 727
BccI CCATC 3 cut(s) 64, 426, 756
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciT130I CCWGG 1 cut(s) 674
BcoDI GTCTC 2 cut(s) 34, 259
BfaI CTAG 1 cut(s) 856
BfmI CTRYAG 1 cut(s) 741
BisI GCNGC 2 cut(s) 81, 741
BlsI GCNGC 2 cut(s) 82, 742
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 674
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 674
BmrI ACTGGG 1 cut(s) 610
BmsI GCATC 1 cut(s) 727
BmuI ACTGGG 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 85
BpuEI CTTGAG 2 cut(s) 562, 711
BsaI GGTCTC 2 cut(s) 34, 259
BsaJI CCNNGG 3 cut(s) 75, 300, 388
BsaXI ACNNNNNCTCC 6 cut(s) 440, 470, 628, 658, 810, 840
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 465, 526
Bse118I RCCGGY 1 cut(s) 753
Bse1I ACTGG 2 cut(s) 605, 638
BseBI CCWGG 1 cut(s) 674
BseDI CCNNGG 3 cut(s) 75, 300, 388
BseLI CCNNNNNNNGG 3 cut(s) 181, 465, 526
BseMII CTCAG 2 cut(s) 99, 279
BseNI ACTGG 2 cut(s) 605, 638
BseXI GCAGC 1 cut(s) 727
BseYI CCCAGC 1 cut(s) 829
Bsh1285I CGRYCG 1 cut(s) 848
BshFI GGCC 7 cut(s) 74, 80, 443, 618, 677, 747, 825
BsiEI CGRYCG 1 cut(s) 848
BsiSI CCGG 1 cut(s) 754
BslI CCNNNNNNNGG 3 cut(s) 181, 465, 526
BsmAI GTCTC 2 cut(s) 34, 259
BsmI GAATGC 2 cut(s) 595, 842
BsnI GGCC 7 cut(s) 74, 80, 443, 618, 677, 747, 825
Bso31I GGTCTC 2 cut(s) 34, 259
Bsp143I GATC 3 cut(s) 243, 355, 430
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 2 cut(s) 81, 478
BspANI GGCC 7 cut(s) 74, 80, 443, 618, 677, 747, 825
BspCNI CTCAG 2 cut(s) 98, 278
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 306
BspMAI CTGCAG 1 cut(s) 745
BspPI GGATC 2 cut(s) 350, 425
BspTNI GGTCTC 2 cut(s) 34, 259
BsrFI RCCGGY 1 cut(s) 753
BsrI ACTGG 2 cut(s) 605, 638
BssAI RCCGGY 1 cut(s) 753
BssECI CCNNGG 3 cut(s) 75, 300, 388
BssMI GATC 3 cut(s) 243, 355, 430
BssT1I CCWWGG 2 cut(s) 75, 388
Bst2UI CCWGG 1 cut(s) 674
Bst4CI ACNGT 2 cut(s) 277, 846
BstC8I GCNNGC 4 cut(s) 135, 271, 476, 745
BstDEI CTNAG 4 cut(s) 24, 85, 138, 265
BstDSI CCRYGG 1 cut(s) 75
BstENI CCTNNNNNAGG 1 cut(s) 179
BstKTI GATC 3 cut(s) 246, 358, 433
BstMAI GTCTC 2 cut(s) 34, 259
BstMBI GATC 3 cut(s) 243, 355, 430
BstMCI CGRYCG 1 cut(s) 848
BstMWI GCNNNNNNNGC 2 cut(s) 80, 86
BstNI CCWGG 1 cut(s) 674
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 672
BstSFI CTRYAG 1 cut(s) 741
BstV1I GCAGC 1 cut(s) 727
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 7 cut(s) 74, 80, 443, 618, 677, 747, 825
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 141
BtsI GCAGTG 2 cut(s) 279, 651
BtsIMutI CAGTG 3 cut(s) 273, 279, 651
Cac8I GCNNGC 4 cut(s) 135, 271, 476, 745
CciI TCATGA 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 753
Cfr13I GGNCC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 217
CviAII CATG 6 cut(s) 76, 238, 314, 565, 717, 781
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 4 cut(s) 24, 85, 138, 265
DpnI GATC 3 cut(s) 245, 357, 432
DpnII GATC 3 cut(s) 243, 355, 430
EaeI YGGCCR 2 cut(s) 72, 78
Eco130I CCWWGG 2 cut(s) 75, 388
Eco147I AGGCCT 3 cut(s) 443, 677, 825
Eco31I GGTCTC 2 cut(s) 34, 259
Eco47I GGWCC 1 cut(s) 305
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 672
EcoT14I CCWWGG 2 cut(s) 75, 388
ErhI CCWWGG 2 cut(s) 75, 388
FaeI CATG 6 cut(s) 79, 241, 317, 568, 720, 784
FaiI YATR 8 cut(s) 77, 239, 286, 315, 485, 566, 718, 782
FatI CATG 6 cut(s) 75, 237, 313, 564, 716, 780
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 2 cut(s) 81, 741
Fsp4HI GCNGC 2 cut(s) 81, 741
FspBI CTAG 1 cut(s) 856
GluI GCNGC 2 cut(s) 81, 741
GsaI CCCAGC 1 cut(s) 833
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 7 cut(s) 74, 80, 443, 618, 677, 747, 825
HapII CCGG 1 cut(s) 754
Hin1II CATG 6 cut(s) 79, 241, 317, 568, 720, 784
HinfI GANTC 1 cut(s) 724
HpaII CCGG 1 cut(s) 754
Hpy166II GTNNAC 2 cut(s) 496, 787
Hpy188I TCNGA 4 cut(s) 69, 301, 512, 802
Hpy188III TCNNGA 5 cut(s) 104, 314, 351, 466, 586
Hpy8I GTNNAC 2 cut(s) 496, 787
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 2 cut(s) 277, 846
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 7 cut(s) 241, 284, 593, 716, 743, 769, 840
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 86
HpyF3I CTNAG 4 cut(s) 24, 85, 138, 265
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 6 cut(s) 79, 241, 317, 568, 720, 784
Kzo9I GATC 3 cut(s) 243, 355, 430
LmnI GCTCC 1 cut(s) 649
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 1 cut(s) 727
MaeI CTAG 1 cut(s) 856
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 3 cut(s) 58, 115, 277
MalI GATC 3 cut(s) 245, 357, 432
MboI GATC 3 cut(s) 243, 355, 430
MboII GAAGA 4 cut(s) 3, 6, 288, 637
MfeI CAATTG 1 cut(s) 534
MflI RGATCY 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 3 cut(s) 94, 413, 534
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 1 cut(s) 718
MmeI TCCRAC 1 cut(s) 332
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
MseI TTAA 2 cut(s) 171, 701
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 74
MspA1I CMGCKG 4 cut(s) 89, 269, 478, 833
MspI CCGG 1 cut(s) 754
MspR9I CCNGG 1 cut(s) 674
MunI CAATTG 1 cut(s) 534
Mva1269I GAATGC 2 cut(s) 595, 842
MvaI CCWGG 1 cut(s) 674
MwoI GCNNNNNNNGC 2 cut(s) 80, 86
NcoI CCATGG 1 cut(s) 75
NdeII GATC 3 cut(s) 243, 355, 430
NlaIII CATG 6 cut(s) 79, 241, 317, 568, 720, 784
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 377
PagI TCATGA 1 cut(s) 313
PceI AGGCCT 3 cut(s) 443, 677, 825
PctI GAATGC 2 cut(s) 595, 842
PflMI CCANNNNNTGG 2 cut(s) 465, 526
PkrI GCNGC 2 cut(s) 82, 742
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 672
PspFI CCCAGC 1 cut(s) 829
PspGI CCWGG 1 cut(s) 672
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 305
PstI CTGCAG 1 cut(s) 745
PsuI RGATCY 1 cut(s) 355
PvuII CAGCTG 3 cut(s) 89, 269, 833
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 2 cut(s) 171, 701
SatI GCNGC 2 cut(s) 81, 741
Sau3AI GATC 3 cut(s) 243, 355, 430
Sau96I GGNCC 1 cut(s) 305
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 1 cut(s) 718
ScrFI CCNGG 1 cut(s) 674
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 1 cut(s) 741
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 577, 726
SmoI CTYRAG 2 cut(s) 577, 726
Sse9I AATT 3 cut(s) 94, 413, 534
SseBI AGGCCT 3 cut(s) 443, 677, 825
SsiI CCGC 2 cut(s) 81, 478
SspMI CTAG 1 cut(s) 856
StuI AGGCCT 3 cut(s) 443, 677, 825
StyD4I CCNGG 1 cut(s) 672
StyI CCWWGG 2 cut(s) 75, 388
TaaI ACNGT 2 cut(s) 277, 846
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 760, 848
TasI AATT 3 cut(s) 94, 413, 534
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 171, 701
Tru9I TTAA 2 cut(s) 171, 701
TscAI CASTG 3 cut(s) 280, 286, 658
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 769
TspRI CASTG 3 cut(s) 280, 286, 658
Van91I CCANNNNNTGG 2 cut(s) 465, 526
VpaK11BI GGWCC 1 cut(s) 305
XagI CCTNNNNNAGG 1 cut(s) 179
XceI RCATGY 1 cut(s) 241
XmiI GTMKAC 1 cut(s) 786
XspI CTAG 1 cut(s) 856
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.