Rh2CG477800

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
64307631 .. 64308812
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG477800.1

Sequence Viewer

Length: 987 bp
ATGTATATAAACGGCTTCAATTCTCAAACTATAGCATCAAACACAACAACAGCTTCATCTTCTCTCTCTAAACCTACAACTTCTCTCAACATTATGTCTTCCTCTAAGGTCTCAGTGATGCTTTGCCTCTCTGCTGTTTTGTTAAGTTCTTTCATGGCCATGGCTGCAGCCGGTAATTTCTATCAAGACTTTGACATCACATTCGGCGAACAACGAGCTAAGATATTCAACGGAGGACAACATCTCACACTCGACCTCGACCAGTATTCCGGATCTGGTTTCAAGTCCAAGAAGGAGTACTTGTTTGGAAGGATCGACATGCAAATCAAACTTGTCGCTGGCAACTCAGCTGGCACTGTCACTGCATATTATTTGTCTTCTCAAGGTCCAACTCATGATGAAATCGATTTTGAGTTTTTGGGAAACTCTTCTGGTGAACCCTACACTCTCCACACCAATGTGTTCAGCCAGGGGAAAGGGAACAGAGAACAACAATTCCATCTTTGGTTTGATCCTACAAACGCCTTCCATACCTACTCGCTTGTCTGGAACAGCCAACGCATTATATTCTTGGTGGATAATATTCCAATTAGAGTGTTCAACAACTTGGAGTCAGTTGGTGTTCCATTCCCCAAAAACCAACCGATGAGGATTTACTCGAGCCTGTGGAATGCTGATGACTGGGCTACACAAGGTGGGCGTGTGAAGACTGACTGGACTCACGCTCCTTTCACTGCCTCGTACAGAAACTTCAAGGCCAATGCCTGCGTCGCTGGCTCATCGTCATCATCATGCGGTGTCTCCACTTCTGCTTCAACTAATTCCTTAACTGATCAACAGGGTACATGGCACAATCAAGGTCTAGATGCCGCAGGCCGAAACAGGATAAGATGGGTGCAGCAGAAGTTCATGGTCTACAACTACTGTACTGACCTAAAACGATTTCCCCAAGGTCTGCCGGTGGAATGTAGACGATCAAGGTTCTAG

Protein Analysis

328

Amino Acids

36.57

Weight (kDa)

8.89

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 61 - 240 1.5e-67 Glycosyl hydrolases family 16
XET_C PF06955 281 - 323 7.2e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 915, 970
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 2 cut(s) 795, 870
AclWI GGATC 3 cut(s) 280, 320, 506
AcoI YGGCCR 1 cut(s) 156
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 4 cut(s) 299, 743, 844, 928
AgsI TTSAA 6 cut(s) 19, 229, 283, 601, 754, 816
AjnI CCWGG 1 cut(s) 468
AleI CACNNNNGTG 1 cut(s) 458
AloI GAACNNNNNNTCC 2 cut(s) 480, 512
AluBI AGCT 3 cut(s) 53, 218, 350
AluI AGCT 3 cut(s) 53, 218, 350
Alw26I GTCTC 2 cut(s) 115, 805
AlwI GGATC 3 cut(s) 280, 320, 506
Ama87I CYCGRG 1 cut(s) 658
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 3 cut(s) 156, 756, 874
ApeKI GCWGC 3 cut(s) 164, 167, 898
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
Asp700I GAANNNNTTC 1 cut(s) 427
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 446
AvaI CYCGRG 1 cut(s) 658
AvaII GGWCC 1 cut(s) 386
BalI TGGCCA 1 cut(s) 158
BarI GAAGNNNNNNTAC 2 cut(s) 734, 766
BbsI GAAGAC 3 cut(s) 90, 369, 713
BbvI GCAGC 3 cut(s) 151, 179, 910
BccI CCATC 2 cut(s) 507, 885
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 470
BclI TGATCA 1 cut(s) 832
BcoDI GTCTC 2 cut(s) 115, 805
BfaI CTAG 2 cut(s) 863, 985
BfmI CTRYAG 2 cut(s) 30, 165
BisI GCNGC 4 cut(s) 165, 168, 870, 899
BlsI GCNGC 4 cut(s) 166, 169, 871, 900
BmcAI AGTACT 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 1 cut(s) 386
BmeT110I CYCGRG 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 386
BmrFI CCNGG 1 cut(s) 470
BmrI ACTGGG 1 cut(s) 691
BmsI GCATC 3 cut(s) 44, 108, 856
BmuI ACTGGG 1 cut(s) 691
BpiI GAAGAC 3 cut(s) 90, 369, 713
BpuEI CTTGAG 1 cut(s) 366
Bsa29I ATCGAT 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 3 cut(s) 159, 469, 949
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 4 cut(s) 287, 317, 709, 739
Bse118I RCCGGY 2 cut(s) 170, 958
Bse1I ACTGG 3 cut(s) 262, 686, 719
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 1 cut(s) 470
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 159, 469, 949
BseMII CTCAG 2 cut(s) 126, 360
BseNI ACTGG 3 cut(s) 262, 686, 719
BseXI GCAGC 3 cut(s) 151, 179, 910
BsgI GTGCAG 1 cut(s) 917
BshFI GGCC 3 cut(s) 158, 758, 876
BshVI ATCGAT 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 658
BsiSI CCGG 3 cut(s) 171, 270, 959
BsmAI GTCTC 2 cut(s) 115, 805
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 3 cut(s) 158, 758, 876
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 658
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 5 cut(s) 272, 312, 511, 832, 974
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 2 cut(s) 795, 870
BspANI GGCC 3 cut(s) 158, 758, 876
BspCNI CTCAG 2 cut(s) 125, 359
BspDI ATCGAT 1 cut(s) 405
BspEI TCCGGA 1 cut(s) 269
BspHI TCATGA 1 cut(s) 394
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 3 cut(s) 280, 320, 506
BspTNI GGTCTC 1 cut(s) 115
BsrFI RCCGGY 2 cut(s) 170, 958
BsrI ACTGG 3 cut(s) 262, 686, 719
BssAI RCCGGY 2 cut(s) 170, 958
BssECI CCNNGG 3 cut(s) 159, 469, 949
BssMI GATC 5 cut(s) 272, 312, 511, 832, 974
BssT1I CCWWGG 2 cut(s) 159, 949
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 358, 926
Bst6I CTCTTC 1 cut(s) 433
BstC8I GCNNGC 5 cut(s) 340, 352, 766, 775, 874
BstDEI CTNAG 4 cut(s) 105, 112, 219, 346
BstDSI CCRYGG 1 cut(s) 159
BstKTI GATC 5 cut(s) 275, 315, 514, 835, 977
BstMAI GTCTC 2 cut(s) 115, 805
BstMBI GATC 5 cut(s) 272, 312, 511, 832, 974
BstMWI GCNNNNNNNGC 3 cut(s) 164, 770, 774
BstNI CCWGG 1 cut(s) 470
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 2 cut(s) 30, 165
BstV1I GCAGC 3 cut(s) 151, 179, 910
BstV2I GAAGAC 3 cut(s) 90, 369, 713
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
Bsu15I ATCGAT 1 cut(s) 405
BsuRI GGCC 3 cut(s) 158, 758, 876
BsuTUI ATCGAT 1 cut(s) 405
BtgI CCRYGG 1 cut(s) 159
BtsI GCAGTG 2 cut(s) 360, 732
BtsIMutI CAGTG 4 cut(s) 120, 354, 360, 732
Cac8I GCNNGC 5 cut(s) 340, 352, 766, 775, 874
CciI TCATGA 1 cut(s) 394
Cfr10I RCCGGY 2 cut(s) 170, 958
Cfr13I GGNCC 1 cut(s) 386
ClaI ATCGAT 1 cut(s) 405
CseI GACGC 1 cut(s) 757
Csp6I GTAC 4 cut(s) 298, 742, 843, 927
CviAII CATG 7 cut(s) 154, 160, 319, 395, 792, 846, 910
CviQI GTAC 4 cut(s) 298, 742, 843, 927
DdeI CTNAG 4 cut(s) 105, 112, 219, 346
DpnI GATC 5 cut(s) 274, 314, 513, 834, 976
DpnII GATC 5 cut(s) 272, 312, 511, 832, 974
DraIII CACNNNGTG 1 cut(s) 695
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco130I CCWWGG 2 cut(s) 159, 949
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 468
EcoT14I CCWWGG 2 cut(s) 159, 949
ErhI CCWWGG 2 cut(s) 159, 949
FaeI CATG 7 cut(s) 157, 163, 322, 398, 795, 849, 913
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FatI CATG 7 cut(s) 153, 159, 318, 394, 791, 845, 909
FbaI TGATCA 1 cut(s) 832
FblI GTMKAC 2 cut(s) 915, 970
Fnu4HI GCNGC 4 cut(s) 165, 168, 870, 899
Fsp4HI GCNGC 4 cut(s) 165, 168, 870, 899
FspBI CTAG 2 cut(s) 863, 985
GluI GCNGC 4 cut(s) 165, 168, 870, 899
HaeIII GGCC 3 cut(s) 158, 758, 876
HapII CCGG 3 cut(s) 171, 270, 959
HgaI GACGC 1 cut(s) 757
Hin1II CATG 7 cut(s) 157, 163, 322, 398, 795, 849, 913
HinfI GANTC 2 cut(s) 611, 718
HpaII CCGG 3 cut(s) 171, 270, 959
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 3 cut(s) 437, 916, 971
Hpy188III TCNNGA 5 cut(s) 185, 270, 395, 547, 863
Hpy8I GTNNAC 3 cut(s) 437, 916, 971
Hpy99I CGWCG 1 cut(s) 773
HpyAV CCTTC 3 cut(s) 286, 303, 535
HpyCH4III ACNGT 2 cut(s) 358, 926
HpyCH4V TGCA 4 cut(s) 167, 322, 365, 898
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 770, 774
HpyF3I CTNAG 4 cut(s) 105, 112, 219, 346
Hsp92II CATG 7 cut(s) 157, 163, 322, 398, 795, 849, 913
Kpn2I TCCGGA 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 5 cut(s) 272, 312, 511, 832, 974
LmnI GCTCC 1 cut(s) 730
Lsp1109I GCAGC 3 cut(s) 151, 179, 910
LweI GCATC 3 cut(s) 44, 108, 856
MaeI CTAG 2 cut(s) 863, 985
MaeIII GTNAC 1 cut(s) 358
MalI GATC 5 cut(s) 274, 314, 513, 834, 976
MboI GATC 5 cut(s) 272, 312, 511, 832, 974
MboII GAAGA 5 cut(s) 51, 90, 369, 420, 718
MflI RGATCY 1 cut(s) 272
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 5 cut(s) 19, 175, 494, 588, 820
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 2 cut(s) 620, 712
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 6 cut(s) 112, 137, 227, 266, 642, 748
Mox20I TGGCCA 1 cut(s) 158
MroI TCCGGA 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 427
MscI TGGCCA 1 cut(s) 158
MseI TTAA 2 cut(s) 143, 827
MslI CAYNNNNRTG 4 cut(s) 158, 456, 458, 790
Msp20I TGGCCA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 3 cut(s) 171, 270, 959
MspR9I CCNGG 1 cut(s) 470
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 1 cut(s) 470
MwoI GCNNNNNNNGC 3 cut(s) 164, 770, 774
NcoI CCATGG 1 cut(s) 159
NdeII GATC 5 cut(s) 272, 312, 511, 832, 974
NlaIII CATG 7 cut(s) 157, 163, 322, 398, 795, 849, 913
NmuCI GTSAC 1 cut(s) 358
NspI RCATGY 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 458
PaeR7I CTCGAG 1 cut(s) 658
PagI TCATGA 1 cut(s) 394
PctI GAATGC 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 427
PkrI GCNGC 4 cut(s) 166, 169, 871, 900
PleI GAGTC 2 cut(s) 619, 712
PpsI GAGTC 2 cut(s) 619, 712
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspPI GGNCC 1 cut(s) 386
PspXI VCTCGAGB 1 cut(s) 658
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 4 cut(s) 299, 743, 844, 928
RsaNI GTAC 4 cut(s) 298, 742, 843, 927
RseI CAYNNNNRTG 4 cut(s) 158, 456, 458, 790
SaqAI TTAA 2 cut(s) 143, 827
SatI GCNGC 4 cut(s) 165, 168, 870, 899
Sau3AI GATC 5 cut(s) 272, 312, 511, 832, 974
Sau96I GGNCC 1 cut(s) 386
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 2 cut(s) 620, 712
ScrFI CCNGG 1 cut(s) 470
SfaNI GCATC 3 cut(s) 44, 108, 856
SfcI CTRYAG 2 cut(s) 30, 165
Sfr274I CTCGAG 1 cut(s) 658
SinI GGWCC 1 cut(s) 386
SlaI CTCGAG 1 cut(s) 658
SmiMI CAYNNNNRTG 4 cut(s) 158, 456, 458, 790
SmlI CTYRAG 2 cut(s) 381, 658
SmoI CTYRAG 2 cut(s) 381, 658
Sse9I AATT 5 cut(s) 19, 175, 494, 588, 820
SsiI CCGC 2 cut(s) 795, 870
SspI AATATT 1 cut(s) 583
SspMI CTAG 2 cut(s) 863, 985
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 2 cut(s) 159, 949
TaaI ACNGT 2 cut(s) 358, 926
TaqI TCGA 5 cut(s) 252, 258, 315, 405, 659
TasI AATT 5 cut(s) 19, 175, 494, 588, 820
TatI WGTACW 2 cut(s) 297, 926
TauI GCSGC 1 cut(s) 872
Tru1I TTAA 2 cut(s) 143, 827
Tru9I TTAA 2 cut(s) 143, 827
TscAI CASTG 4 cut(s) 120, 361, 367, 739
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 3 cut(s) 164, 167, 898
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 4 cut(s) 45, 142, 414, 898
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 4 cut(s) 120, 361, 367, 739
VpaK11BI GGWCC 1 cut(s) 386
XbaI TCTAGA 1 cut(s) 862
XceI RCATGY 1 cut(s) 322
XhoI CTCGAG 1 cut(s) 658
XmiI GTMKAC 2 cut(s) 915, 970
XmnI GAANNNNTTC 1 cut(s) 427
XspI CTAG 2 cut(s) 863, 985
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.