Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000406

Physical Location & Seq

Genomic Coordinates Reverse (-)

17704470 .. 17709821

Gene Structure 5352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00096480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGAAATATTAATATCAGAGAAGAATATATAGATTTAGACCAGATTCATACCTTGCAAGCACTCACAGTTCTCCGACTCTTTGCGCACCACATTGAGAACCGAATCTATCAAGTCAGCCCTTTCGGTGTAGTGACCTTTCGTAAAATTGTTTCTAGCACCAGACTAACCGAAGACGAAGTTATCAGGAGGGAAGATTTGACCGTAGAAACTAGATCTGAAGCTGTCCATGGTCCCAAGCTCCAGATCCATGACGACAACGCGTGGAACATACCTCCAGCCGCTGGCTTCGTTGTAGCAGACTTATCATCTTCAGGGTACCATCATGATGAGATTGGCTTGGAGTTTCTTGGAAACACATCCGGGAATCCCGACACTCTCAGTACTAATATCTACACGCAGGGAATAGGGGTTACCCCCTATTACTTGGAGGTGAGCCAACAATTCCATCATTGGTTTGATCCCTCCAAAGACTTCCACACTTACTCCGTTGTTTGGAATGTTCATCGCATTATCTGGGCTACACAAGGTGGCCATGTGAAGACCGACCGGTCTCAAGCTCCTTTCACCGCCTCTTATGGAAGATACAACATCAATGCTTGTCTAGGATCACAGCAGCAAGGTTCATCATCATCATCATATCCATACTCATACACAGATCGTTTTCCCACATCTACCAATTCCTCAAATGTCGACAACTCATGGAGGAATCTAGGGCTTAATGCAGCAGGTCGAAACAAGCTTCGATGGGTTCAAACGAAGTTCATGATCTACAACTACTGCACCGACCATAATAAGTTTCCCCGGTGGTTTGCAACGGGAATGCCGCATTCCAAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

280

Amino Acids

32.0

Weight (kDa)

6.7

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	94 - 193	3.5e-19	Glycosyl hydrolases family 16
XET_C	PF06955	233 - 269	1.4e-13	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23730 AT4G14130
fragaria_vesca	FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica	MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica	Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis	pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis	RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata	RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora	Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa	Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha	Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana	Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	550
Acc16I	TGCGCA	1 cut(s)	87
Acc36I	ACCTGC	1 cut(s)	719
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	318
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	693
AccII	CGCG	1 cut(s)	263
AciI	CCGC	3 cut(s)	282, 570, 827
AclWI	GGATC	3 cut(s)	241, 455, 616
AcoI	YGGCCR	1 cut(s)	532
AcuI	CTGAAG	2 cut(s)	240, 297
AdeI	CACNNNGTG	1 cut(s)	530
AfaI	GTAC	2 cut(s)	320, 385
AfiI	CCNNNNNNNGG	2 cut(s)	284, 495
AflIII	ACRYGT	1 cut(s)	261
AgeI	ACCGGT	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	755
AluBI	AGCT	4 cut(s)	224, 241, 560, 742
AluI	AGCT	4 cut(s)	224, 241, 560, 742
Alw26I	GTCTC	1 cut(s)	558
AlwI	GGATC	3 cut(s)	241, 455, 616
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	532
ApeKI	GCWGC	2 cut(s)	616, 725
AseI	ATTAAT	1 cut(s)	12
AsiGI	ACCGGT	1 cut(s)	549
Asp718I	GGTACC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	2 cut(s)	364, 805
AsuHPI	GGTGA	2 cut(s)	445, 559
AvaII	GGWCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	318
BbsI	GAAGAC	2 cut(s)	180, 548
BbvI	GCAGC	2 cut(s)	628, 737
BccI	CCATC	3 cut(s)	330, 456, 741
BcnI	CCSGG	2 cut(s)	364, 805
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	5 cut(s)	156, 213, 605, 713, 841
BfuAI	ACCTGC	1 cut(s)	719
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	4 cut(s)	282, 617, 726, 827
BlsI	GCNGC	4 cut(s)	283, 618, 727, 828
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	2 cut(s)	364, 805
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	235, 320
BmrFI	CCNGG	2 cut(s)	364, 805
BpiI	GAAGAC	2 cut(s)	180, 548
BpmI	CTGGAG	2 cut(s)	227, 261
BpuEI	CTTGAG	1 cut(s)	540
BpuMI	CCSGG	2 cut(s)	364, 805
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	229, 803
BsaWI	WCCGGW	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 495
Bse118I	RCCGGY	1 cut(s)	549
BseDI	CCNNGG	2 cut(s)	229, 803
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	2 cut(s)	284, 495
BseMII	CTCAG	1 cut(s)	394
BseXI	GCAGC	2 cut(s)	628, 737
BsgI	GTGCAG	1 cut(s)	766
Bsh1236I	CGCG	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	550
BshFI	GGCC	1 cut(s)	534
BshNI	GGYRCC	1 cut(s)	318
BshTI	ACCGGT	1 cut(s)	549
BsiEI	CGRYCG	1 cut(s)	550
BsiSI	CCGG	3 cut(s)	363, 550, 805
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	284, 495
BsmAI	GTCTC	1 cut(s)	558
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	2 cut(s)	828, 829
BsnI	GGCC	1 cut(s)	534
Bso31I	GGTCTC	1 cut(s)	558
Bsp143I	GATC	6 cut(s)	215, 246, 460, 608, 658, 768
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	3 cut(s)	282, 570, 827
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	263
BspHI	TCATGA	2 cut(s)	325, 765
BspLI	GGNNCC	2 cut(s)	235, 320
BspMI	ACCTGC	1 cut(s)	719
BspPI	GGATC	3 cut(s)	241, 455, 616
BspT107I	GGYRCC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	549
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	2 cut(s)	229, 803
BssMI	GATC	6 cut(s)	215, 246, 460, 608, 658, 768
BssT1I	CCWWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	70, 205
BstC8I	GCNNGC	2 cut(s)	60, 286
BstDEI	CTNAG	1 cut(s)	380
BstDSI	CCRYGG	1 cut(s)	229
BstEII	GGTNACC	1 cut(s)	412
BstF5I	GGATG	1 cut(s)	359
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	6 cut(s)	218, 249, 463, 611, 661, 771
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	6 cut(s)	215, 246, 460, 608, 658, 768
BstMCI	CGRYCG	1 cut(s)	550
BstPI	GGTNACC	1 cut(s)	412
BstSCI	CCNGG	2 cut(s)	362, 803
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	628, 737
BstV2I	GAAGAC	2 cut(s)	180, 548
BstX2I	RGATCY	2 cut(s)	215, 246
BstYI	RGATCY	2 cut(s)	215, 246
BsuRI	GGCC	1 cut(s)	534
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	491
BtsCI	GGATG	1 cut(s)	359
BveI	ACCTGC	1 cut(s)	719
Cac8I	GCNNGC	2 cut(s)	60, 286
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	2 cut(s)	325, 765
CfoI	GCGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	319, 384
CspAI	ACCGGT	1 cut(s)	549
CviAII	CATG	6 cut(s)	230, 251, 326, 536, 702, 766
CviQI	GTAC	2 cut(s)	319, 384
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	6 cut(s)	217, 248, 462, 610, 660, 770
DpnII	GATC	6 cut(s)	215, 246, 460, 608, 658, 768
DraIII	CACNNNGTG	1 cut(s)	530
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	558
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	2 cut(s)	240, 297
Eco91I	GGTNACC	1 cut(s)	412
EcoO65I	GGTNACC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	6 cut(s)	233, 254, 329, 539, 705, 769
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	6 cut(s)	229, 250, 325, 535, 701, 765
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	4 cut(s)	282, 617, 726, 827
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	4 cut(s)	282, 617, 726, 827
FspBI	CTAG	5 cut(s)	156, 213, 605, 713, 841
FspI	TGCGCA	1 cut(s)	87
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	4 cut(s)	282, 617, 726, 827
GsuI	CTGGAG	2 cut(s)	227, 261
HaeIII	GGCC	1 cut(s)	534
HapII	CCGG	3 cut(s)	363, 550, 805
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	6 cut(s)	233, 254, 329, 539, 705, 769
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	5 cut(s)	46, 78, 105, 367, 709
HpaII	CCGG	3 cut(s)	363, 550, 805
HphI	GGTGA	2 cut(s)	445, 559
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	3 cut(s)	20, 77, 220
Hpy188III	TCNNGA	5 cut(s)	187, 244, 326, 371, 766
Hpy8I	GTNNAC	1 cut(s)	694
HpyCH4III	ACNGT	2 cut(s)	70, 205
HpyCH4V	TGCA	4 cut(s)	58, 725, 783, 815
HpyF3I	CTNAG	1 cut(s)	380
Hsp92II	CATG	6 cut(s)	233, 254, 329, 539, 705, 769
HspAI	GCGC	1 cut(s)	86
KpnI	GGTACC	1 cut(s)	322
Kzo9I	GATC	6 cut(s)	215, 246, 460, 608, 658, 768
LmnI	GCTCC	2 cut(s)	246, 565
Lsp1109I	GCAGC	2 cut(s)	628, 737
MaeI	CTAG	5 cut(s)	156, 213, 605, 713, 841
MaeIII	GTNAC	2 cut(s)	133, 412
MalI	GATC	6 cut(s)	217, 248, 462, 610, 660, 770
MboI	GATC	6 cut(s)	215, 246, 460, 608, 658, 768
MboII	GAAGA	6 cut(s)	35, 185, 206, 303, 553, 594
MflI	RGATCY	2 cut(s)	215, 246
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	3 cut(s)	147, 443, 679
MluI	ACGCGT	1 cut(s)	261
MluNI	TGGCCA	1 cut(s)	534
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	7 cut(s)	183, 285, 424, 475, 583, 694, 699
Mox20I	TGGCCA	1 cut(s)	534
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	2 cut(s)	12, 720
MslI	CAYNNNNRTG	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	3 cut(s)	363, 550, 805
MspR9I	CCNGG	2 cut(s)	364, 805
Mva1269I	GAATGC	2 cut(s)	828, 829
MvnI	CGCG	1 cut(s)	263
NciI	CCSGG	2 cut(s)	364, 805
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	6 cut(s)	215, 246, 460, 608, 658, 768
NlaIII	CATG	6 cut(s)	233, 254, 329, 539, 705, 769
NlaIV	GGNNCC	2 cut(s)	235, 320
NmuCI	GTSAC	1 cut(s)	133
NsbI	TGCGCA	1 cut(s)	87
PagI	TCATGA	2 cut(s)	325, 765
PctI	GAATGC	2 cut(s)	828, 829
PfeI	GAWTC	4 cut(s)	46, 105, 367, 709
PflMI	CCANNNNNTGG	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	362
PinAI	ACCGGT	1 cut(s)	549
PkrI	GCNGC	4 cut(s)	283, 618, 727, 828
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	12
PspEI	GGTNACC	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	235, 320
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	215, 246
RsaI	GTAC	2 cut(s)	320, 385
RsaNI	GTAC	2 cut(s)	319, 384
RseI	CAYNNNNRTG	1 cut(s)	327
SalI	GTCGAC	1 cut(s)	692
SaqAI	TTAA	2 cut(s)	12, 720
SatI	GCNGC	4 cut(s)	282, 617, 726, 827
Sau3AI	GATC	6 cut(s)	215, 246, 460, 608, 658, 768
Sau96I	GGNCC	1 cut(s)	233
ScaI	AGTACT	1 cut(s)	385
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	364, 805
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
Sse9I	AATT	3 cut(s)	147, 443, 679
SsiI	CCGC	3 cut(s)	282, 570, 827
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	5 cut(s)	156, 213, 605, 713, 841
StyD4I	CCNGG	2 cut(s)	362, 803
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	70, 205
TaqI	TCGA	3 cut(s)	693, 733, 745
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	3 cut(s)	147, 443, 679
TatI	WGTACW	1 cut(s)	383
TauI	GCSGC	2 cut(s)	284, 829
TfiI	GAWTC	4 cut(s)	46, 105, 367, 709
Tru1I	TTAA	2 cut(s)	12, 720
Tru9I	TTAA	2 cut(s)	12, 720
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	616, 725
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	38, 494, 615, 754
TspGWI	ACGGA	1 cut(s)	478
Van91I	CCANNNNNTGG	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	693
XspI	CTAG	5 cut(s)	156, 213, 605, 713, 841
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.