Rorug02G0425800

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
54676322 .. 54677761
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0425800.1

Sequence Viewer

Length: 873 bp
ATGAGGATTCATCATGGAGGGAGATTTCATAGTGAGAATGGCCTAAATAGGATTTACAGAGAGGGCCAATTGTGCTTTGTTGATGGAGTAGACCCGGACAAGGTGTTTTTGACAGGGATACACCACTGGACTTATGATTTGGGGTACCAGATGGGGCCAACTCAATTCTGGTTTAGAATTCCTGGCAGTGAGGAGGGGACTAGAGAGCTTGATCAGTTTGAAGCAAATCTTAACCATGTTTTGTTCATTGGCTGGTGGATTGAAGATGTGGAAGAATGGCCTCATGTTACAACTGATGATGAAGAGGAAGAAGGGTCTTTAGGGGCTGAGGACATGTGTGATGCTCAAGAGCCTATTTTTGTGGACTTGGATGACATAGGTGATGAGCCCAGGACTGAAACAATCAATGCAAATGGGCCTGACCAAGAAGTGGAAAGAGTAAAAGAGAAGGGTAAAGCTATGATGGTGACAGTAGCAGAAAAAAAGTTTGATGAGATGGGGTTCGAGGGGGATATATCTGATGAAGCTGGGAGTGATTTTGAAGGATTACATAGTCTGCATAGATTCTTAGGTGATGAGGATGAAGACAAAGGGAAGTTCCCTGTTAAGTGCAAGAGAAGATACAGTGAATGGAGGGAGTTCAGGCATAAGCAGGACATGAAGAAACCTACTTTTGAGTTGGGAATGGAGTTTCCAAACTCCAAGGTGTTTAAGAGTGTAACTAGGAAGCATGCAGTTCAAACAAGAAAGGAGATTAGGTTTCCAACAAACACAAGACACAAGGTGTTGGCAAGGTGCAAGACATCTCCTGGTTGCCCTTGGATATTATTCACTGAGTTGAAGCTTGCATGCAAAGGCGCTTCATATTGTTAG

Protein Analysis

290

Amino Acids

33.61

Weight (kDa)

5.19

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 2 - 71 3.3e-09 PB1-like domain
DBD_Tnp_Mut PF03108 225 - 274 4.9e-08 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 430
AccI GTMKAC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 177
AdeI CACNNNGTG 1 cut(s) 784
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 2 cut(s) 100, 430
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 5 cut(s) 221, 263, 542, 740, 841
AjnI CCWGG 3 cut(s) 181, 389, 808
AluBI AGCT 4 cut(s) 208, 458, 527, 844
AluI AGCT 4 cut(s) 208, 458, 527, 844
AoxI GGCC 5 cut(s) 40, 64, 155, 278, 416
ApoI RAATTY 1 cut(s) 177
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
Asp718I GGTACC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 860
AspS9I GGNCC 3 cut(s) 64, 155, 416
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 3 cut(s) 392, 478, 584
BanI GGYRCC 1 cut(s) 144
BanII GRGCYC 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 591
BbvCI CCTCAGC 1 cut(s) 327
BccI CCATC 4 cut(s) 77, 145, 457, 490
BciT130I CCWGG 3 cut(s) 183, 391, 810
BciVI GTATCC 1 cut(s) 111
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 1 cut(s) 95
BfaI CTAG 2 cut(s) 201, 723
BfoI RGCGCY 1 cut(s) 861
BfuI GTATCC 1 cut(s) 111
Bme1390I CCNGG 4 cut(s) 95, 183, 391, 810
BmgT120I GGNCC 3 cut(s) 64, 155, 416
BmiI GGNNCC 2 cut(s) 146, 156
BmrFI CCNGG 4 cut(s) 95, 183, 391, 810
BmsI GCATC 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 591
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 389, 702, 818
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 430
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 3 cut(s) 183, 391, 810
BseDI CCNNGG 3 cut(s) 389, 702, 818
BseGI GGATG 2 cut(s) 376, 586
BseLI CCNNNNNNNGG 2 cut(s) 100, 430
BseMII CTCAG 2 cut(s) 318, 825
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 206
BseYI CCCAGC 1 cut(s) 527
BshFI GGCC 5 cut(s) 42, 66, 157, 280, 418
BshNI GGYRCC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 2 cut(s) 100, 430
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 5 cut(s) 42, 66, 157, 280, 418
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 1 cut(s) 211
BspANI GGCC 5 cut(s) 42, 66, 157, 280, 418
BspCNI CTCAG 2 cut(s) 319, 826
BspLI GGNNCC 2 cut(s) 146, 156
BspT107I GGYRCC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 389, 702, 818
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 2 cut(s) 702, 818
Bst2UI CCWGG 3 cut(s) 183, 391, 810
Bst4CI ACNGT 2 cut(s) 472, 626
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 3 cut(s) 732, 846, 850
BstDEI CTNAG 3 cut(s) 327, 568, 834
BstF5I GGATG 2 cut(s) 376, 586
BstH2I RGCGCY 1 cut(s) 861
BstHHI GCGC 1 cut(s) 860
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 3 cut(s) 183, 391, 810
BstNSI RCATGY 3 cut(s) 337, 734, 852
BstSCI CCNGG 4 cut(s) 93, 181, 389, 808
BstV2I GAAGAC 1 cut(s) 591
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 5 cut(s) 42, 66, 157, 280, 418
BtsCI GGATG 2 cut(s) 376, 586
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 4 cut(s) 124, 193, 631, 831
Cac8I GCNNGC 3 cut(s) 732, 846, 850
CfoI GCGC 1 cut(s) 860
Cfr13I GGNCC 3 cut(s) 64, 155, 416
Csp6I GTAC 1 cut(s) 145
CviAII CATG 7 cut(s) 14, 236, 284, 334, 658, 731, 849
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 3 cut(s) 327, 568, 834
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
DraIII CACNNNGTG 1 cut(s) 784
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco130I CCWWGG 2 cut(s) 702, 818
Eco24I GRGCYC 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 177
EcoRII CCWGG 3 cut(s) 181, 389, 808
EcoT14I CCWWGG 2 cut(s) 702, 818
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 2 cut(s) 702, 818
FaeI CATG 7 cut(s) 17, 239, 287, 337, 661, 734, 852
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 1 cut(s) 211
FatI CATG 7 cut(s) 13, 235, 283, 333, 657, 730, 848
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 1 cut(s) 90
FokI GGATG 2 cut(s) 383, 593
FriOI GRGCYC 1 cut(s) 390
FspBI CTAG 2 cut(s) 201, 723
GlaI GCGC 1 cut(s) 859
GsaI CCCAGC 1 cut(s) 531
HaeII RGCGCY 1 cut(s) 861
HaeIII GGCC 5 cut(s) 42, 66, 157, 280, 418
HapII CCGG 1 cut(s) 95
HhaI GCGC 1 cut(s) 860
Hin1II CATG 7 cut(s) 17, 239, 287, 337, 661, 734, 852
Hin6I GCGC 1 cut(s) 858
HinP1I GCGC 1 cut(s) 858
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 2 cut(s) 7, 564
HpaII CCGG 1 cut(s) 95
HphI GGTGA 3 cut(s) 392, 478, 584
Hpy166II GTNNAC 2 cut(s) 91, 364
Hpy188I TCNGA 1 cut(s) 520
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 2 cut(s) 91, 364
HpyAV CCTTC 3 cut(s) 305, 442, 536
HpyCH4III ACNGT 2 cut(s) 472, 626
HpyCH4V TGCA 7 cut(s) 410, 559, 612, 734, 798, 848, 852
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 3 cut(s) 327, 568, 834
Hsp92II CATG 7 cut(s) 17, 239, 287, 337, 661, 734, 852
HspAI GCGC 1 cut(s) 858
KpnI GGTACC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 211
LweI GCATC 1 cut(s) 331
MaeI CTAG 2 cut(s) 201, 723
MaeIII GTNAC 3 cut(s) 286, 466, 718
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 7 cut(s) 275, 284, 314, 320, 596, 630, 673
MfeI CAATTG 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 3 cut(s) 68, 164, 177
MmeI TCCRAC 1 cut(s) 788
MseI TTAA 3 cut(s) 231, 606, 711
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 4 cut(s) 95, 183, 391, 810
MunI CAATTG 1 cut(s) 68
MvaI CCWGG 3 cut(s) 183, 391, 810
MwoI GCNNNNNNNGC 1 cut(s) 72
NciI CCSGG 1 cut(s) 95
NdeII GATC 1 cut(s) 211
NlaIII CATG 7 cut(s) 17, 239, 287, 337, 661, 734, 852
NlaIV GGNNCC 2 cut(s) 146, 156
NmuCI GTSAC 1 cut(s) 466
NspI RCATGY 3 cut(s) 337, 734, 852
PaeI GCATGC 2 cut(s) 734, 852
PciI ACATGT 1 cut(s) 333
PfeI GAWTC 2 cut(s) 7, 564
PflMI CCANNNNNTGG 1 cut(s) 430
PscI ACATGT 1 cut(s) 333
Psp6I CCWGG 3 cut(s) 181, 389, 808
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 3 cut(s) 181, 389, 808
PspN4I GGNNCC 2 cut(s) 146, 156
PspPI GGNCC 3 cut(s) 64, 155, 416
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 3 cut(s) 231, 606, 711
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 3 cut(s) 64, 155, 416
ScrFI CCNGG 4 cut(s) 95, 183, 391, 810
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
SphI GCATGC 2 cut(s) 734, 852
Sse9I AATT 3 cut(s) 68, 164, 177
SspMI CTAG 2 cut(s) 201, 723
StyD4I CCNGG 4 cut(s) 93, 181, 389, 808
StyI CCWWGG 2 cut(s) 702, 818
TaaI ACNGT 2 cut(s) 472, 626
TaqI TCGA 1 cut(s) 504
TasI AATT 3 cut(s) 68, 164, 177
TfiI GAWTC 2 cut(s) 7, 564
Tru1I TTAA 3 cut(s) 231, 606, 711
Tru9I TTAA 3 cut(s) 231, 606, 711
TscAI CASTG 4 cut(s) 131, 193, 631, 838
TseFI GTSAC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 7 cut(s) 17, 235, 315, 537, 597, 674, 852
TspRI CASTG 4 cut(s) 131, 193, 631, 838
Van91I CCANNNNNTGG 1 cut(s) 430
XapI RAATTY 1 cut(s) 177
XceI RCATGY 3 cut(s) 337, 734, 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 165
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 2 cut(s) 201, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.