pycom09g07160

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
5372791 .. 5374077
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g07160.3

Sequence Viewer

Length: 879 bp
ATGTCTTCTTCTAAGGTCTCAATGTTGTTTTTTCTTTGTTCGATCACAATTTCTCTGGTGGCCGTCGTTGCCTTAGCCGGTAATTTCTATCAAGACTATGAGGTTATGTTCGGCGATCAACACGCTAAGGTTCTTGAAAATGGACAAATTATCACACTCGCCCTTGACAAATCTTCTGGAGCAGGTTTCAAATCAAAGAATGCGTACTTATTTGGAAGGTTTGATATGCAAATCAAGTTGCAACCTGGGAACTCAGCTGGTACCGTGACAACATTTTACTTATCTTCTTCAGGTGCAAATCATGATGAGGTTGACTTTGAGTTTCTGGGGAACTCAACTGGGGAACCCTACACTATCCATACTAATGTCTACGCCCAAGGACAAGGGCTTAAGGAACAACAATTCCATCTGTGGTTCGATCCCACTCAGGACTTCCACACCTACTCCATTGTTTGGAACACCAAGCGCATTATATTCTTGGTAGATGACAGTCCAATTAGAGTGTTCAACAACTTGGAATCAATTGGTCTTCCATTCCCTAAAAACCAATCCATGGGGATTTATGCAACCTTTTGGAATGCCGATGACTGGGCAACACAAGGTGGGCGTGTGAAGACTGACTGGAGCCTAGCTCCTTTCACTGCCTCTTACAGAAACTTCAAAATCAACGCTTGCCTTGGGTCACAAGGGCCATCTTGTGCCTCCACATCTACGGAAAGATCACCAGTCGGCTCTTCATGGAAGAACCAAGGGCTCAATGCTGCAGAGCGAAACAGGCTTCGATGGGTGCAGAGCAAGTTCATGGTCTATGACTACTGCACTGACCGTATTAAGTTCAACAAAGGTCTCCCTCGTGAATGCAAGCATTCAAGAATCTAA

Protein Analysis

293

Amino Acids

32.83

Weight (kDa)

8.5

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 260
AccB7I CCANNNNNTGG 2 cut(s) 453, 553
AccI GTMKAC 1 cut(s) 369
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 273
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 2 cut(s) 206, 262
AfiI CCNNNNNNNGG 3 cut(s) 453, 553, 588
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 6 cut(s) 137, 190, 508, 661, 838, 870
AjnI CCWGG 1 cut(s) 244
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 2 cut(s) 257, 632
AluI AGCT 2 cut(s) 257, 632
Alw26I GTCTC 2 cut(s) 22, 851
AlwI GGATC 1 cut(s) 413
AoxI GGCC 2 cut(s) 60, 689
ApeKI GCWGC 1 cut(s) 761
Asp718I GGTACC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 689
AsuHPI GGTGA 1 cut(s) 714
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 756
BauI CACGAG 1 cut(s) 852
BbsI GAAGAC 2 cut(s) 521, 620
BbvI GCAGC 1 cut(s) 748
BccI CCATC 3 cut(s) 414, 700, 777
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 22, 851
BfaI CTAG 1 cut(s) 629
BfmI CTRYAG 1 cut(s) 762
BfrI CTTAAG 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 1 cut(s) 762
BlsI GCNGC 1 cut(s) 763
Bme1390I CCNGG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 3 cut(s) 262, 345, 626
BmrFI CCNGG 1 cut(s) 246
BmrI ACTGGG 2 cut(s) 348, 598
BmuI ACTGGG 2 cut(s) 348, 598
BpiI GAAGAC 2 cut(s) 521, 620
BplI GAGNNNNNCTC 2 cut(s) 616, 648
BpmI CTGGAG 2 cut(s) 198, 643
Bpu10I CCTNAGC 2 cut(s) 73, 126
BsaI GGTCTC 2 cut(s) 22, 851
BsaJI CCNNGG 5 cut(s) 245, 376, 552, 676, 748
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 3 cut(s) 453, 553, 588
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 4 cut(s) 343, 593, 626, 725
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 5 cut(s) 245, 376, 552, 676, 748
BseLI CCNNNNNNNGG 3 cut(s) 453, 553, 588
BseMII CTCAG 2 cut(s) 267, 440
BseNI ACTGG 4 cut(s) 343, 593, 626, 725
BseXI GCAGC 1 cut(s) 748
BsgI GTGCAG 2 cut(s) 802, 809
BshFI GGCC 2 cut(s) 62, 691
BshNI GGYRCC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 3 cut(s) 453, 553, 588
BsmAI GTCTC 2 cut(s) 22, 851
BsmI GAATGC 4 cut(s) 205, 583, 863, 865
BsnI GGCC 2 cut(s) 62, 691
Bso31I GGTCTC 2 cut(s) 22, 851
Bsp1286I GDGCHC 1 cut(s) 756
Bsp143I GATC 4 cut(s) 42, 115, 418, 719
Bsp19I CCATGG 1 cut(s) 552
BspANI GGCC 2 cut(s) 62, 691
BspCNI CTCAG 2 cut(s) 266, 439
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 262, 345, 626
BspMAI CTGCAG 1 cut(s) 766
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 1 cut(s) 413
BspQI GCTCTTC 1 cut(s) 739
BspT107I GGYRCC 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 389
BspTNI GGTCTC 2 cut(s) 22, 851
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 4 cut(s) 343, 593, 626, 725
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 5 cut(s) 245, 376, 552, 676, 748
BssMI GATC 4 cut(s) 42, 115, 418, 719
BssSI CACGAG 1 cut(s) 852
BssT1I CCWWGG 4 cut(s) 376, 552, 676, 748
Bst2BI CACGAG 1 cut(s) 852
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 3 cut(s) 265, 491, 827
Bst6I CTCTTC 1 cut(s) 739
BstAFI CTTAAG 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 673, 863
BstDEI CTNAG 5 cut(s) 12, 73, 126, 253, 426
BstDSI CCRYGG 1 cut(s) 552
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 4 cut(s) 45, 118, 421, 722
BstMAI GTCTC 2 cut(s) 22, 851
BstMBI GATC 4 cut(s) 42, 115, 418, 719
BstMWI GCNNNNNNNGC 2 cut(s) 68, 775
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 762
BstV1I GCAGC 1 cut(s) 748
BstV2I GAAGAC 2 cut(s) 521, 620
BsuRI GGCC 2 cut(s) 62, 691
BtgI CCRYGG 1 cut(s) 552
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 2 cut(s) 639, 819
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 673, 863
CciI TCATGA 1 cut(s) 301
CfoI GCGC 1 cut(s) 468
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 689
Csp6I GTAC 2 cut(s) 205, 261
CviAII CATG 4 cut(s) 302, 553, 738, 802
CviQI GTAC 2 cut(s) 205, 261
DdeI CTNAG 5 cut(s) 12, 73, 126, 253, 426
DpnI GATC 4 cut(s) 44, 117, 420, 721
DpnII GATC 4 cut(s) 42, 115, 418, 719
DraIII CACNNNGTG 1 cut(s) 602
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 739
EarI CTCTTC 1 cut(s) 739
Eco130I CCWWGG 4 cut(s) 376, 552, 676, 748
Eco24I GRGCYC 1 cut(s) 756
Eco31I GGTCTC 2 cut(s) 22, 851
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 4 cut(s) 376, 552, 676, 748
EcoT38I GRGCYC 1 cut(s) 756
ErhI CCWWGG 4 cut(s) 376, 552, 676, 748
FaeI CATG 4 cut(s) 305, 556, 741, 805
FatI CATG 4 cut(s) 301, 552, 737, 801
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 762
FriOI GRGCYC 1 cut(s) 756
Fsp4HI GCNGC 1 cut(s) 762
FspBI CTAG 1 cut(s) 629
GlaI GCGC 1 cut(s) 467
GluI GCNGC 1 cut(s) 762
GsuI CTGGAG 2 cut(s) 198, 643
HaeIII GGCC 2 cut(s) 62, 691
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 468
Hin1II CATG 4 cut(s) 305, 556, 741, 805
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 2 cut(s) 518, 873
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 714
Hpy166II GTNNAC 2 cut(s) 313, 370
Hpy188III TCNNGA 7 cut(s) 92, 134, 177, 302, 428, 854, 870
Hpy8I GTNNAC 2 cut(s) 313, 370
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 3 cut(s) 265, 491, 827
HpyCH4V TGCA 8 cut(s) 229, 241, 296, 566, 764, 790, 819, 861
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 775
HpyF3I CTNAG 5 cut(s) 12, 73, 126, 253, 426
Hsp92II CATG 4 cut(s) 305, 556, 741, 805
HspAI GCGC 1 cut(s) 466
KpnI GGTACC 1 cut(s) 264
Kzo9I GATC 4 cut(s) 42, 115, 418, 719
LguI GCTCTTC 1 cut(s) 739
LmnI GCTCC 3 cut(s) 179, 624, 637
Lsp1109I GCAGC 1 cut(s) 748
MaeI CTAG 1 cut(s) 629
MaeIII GTNAC 2 cut(s) 265, 681
MalI GATC 4 cut(s) 44, 117, 420, 721
MboI GATC 4 cut(s) 42, 115, 418, 719
MboII GAAGA 7 cut(s) 165, 276, 279, 521, 625, 726, 754
MfeI CAATTG 1 cut(s) 522
MhlI GDGCHC 1 cut(s) 756
MluCI AATT 6 cut(s) 48, 82, 147, 401, 495, 522
MnlI CCTC 5 cut(s) 94, 301, 655, 712, 861
MseI TTAA 2 cut(s) 390, 831
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 257
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 246
MunI CAATTG 1 cut(s) 522
Mva1269I GAATGC 4 cut(s) 205, 583, 863, 865
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 68, 775
NcoI CCATGG 1 cut(s) 552
NdeII GATC 4 cut(s) 42, 115, 418, 719
NlaIII CATG 4 cut(s) 305, 556, 741, 805
NlaIV GGNNCC 3 cut(s) 262, 345, 626
NmuCI GTSAC 2 cut(s) 265, 681
PagI TCATGA 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 739
PctI GAATGC 4 cut(s) 205, 583, 863, 865
PfeI GAWTC 2 cut(s) 518, 873
PflMI CCANNNNNTGG 2 cut(s) 453, 553
PkrI GCNGC 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 3 cut(s) 262, 345, 626
PspPI GGNCC 1 cut(s) 689
PstI CTGCAG 1 cut(s) 766
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 2 cut(s) 206, 262
RsaNI GTAC 2 cut(s) 205, 261
RseI CAYNNNNRTG 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 739
SaqAI TTAA 2 cut(s) 390, 831
SatI GCNGC 1 cut(s) 762
Sau3AI GATC 4 cut(s) 42, 115, 418, 719
Sau96I GGNCC 1 cut(s) 689
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 756
SfcI CTRYAG 1 cut(s) 762
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 6 cut(s) 48, 82, 147, 401, 495, 522
SspMI CTAG 1 cut(s) 629
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 4 cut(s) 376, 552, 676, 748
TaaI ACNGT 3 cut(s) 265, 491, 827
TaqI TCGA 3 cut(s) 41, 417, 781
TasI AATT 6 cut(s) 48, 82, 147, 401, 495, 522
TfiI GAWTC 2 cut(s) 518, 873
Tru1I TTAA 2 cut(s) 390, 831
Tru9I TTAA 2 cut(s) 390, 831
TscAI CASTG 2 cut(s) 646, 826
TseFI GTSAC 2 cut(s) 265, 681
TseI GCWGC 1 cut(s) 761
Tsp45I GTSAC 2 cut(s) 265, 681
TspDTI ATGAA 2 cut(s) 726, 790
TspGWI ACGGA 1 cut(s) 728
TspRI CASTG 2 cut(s) 646, 826
Van91I CCANNNNNTGG 2 cut(s) 453, 553
Vha464I CTTAAG 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.