Rroxscaffold_2G00096500

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
17729551 .. 17730714
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096500.1

Sequence Viewer

Length: 894 bp
ATGTCTTCCTCTAAGGTCTCAGTGATGCTTTGCCTTTCTGCTGTGTTGTTAAATTCTTTCATGGTCATGGCTGCAGCCGGTAATTTCTATGAAGACTTTGACATCACATTCGGCGAACAACGTGCTAAGATACTCAACGGAGGACAACTCCTCACACTCGACCTCGACCAGTATTCCGGAACTGGTTTCAAGTCCAAGAATGAGTACTTGTTTGGAAGGATCGACATGCAAATCAAACTTGTTGCTGGCAACTCGGCTGGCACTGTCACTGCATATTATTTGTCTTCTCAAGGTCCAACTCATGATGAAATCGACTTCGAGTTTTTGGGGAACTCTTCTGGTGAACCCTACACTCTCCACACCAATGTGTTCAGCCAGGGGAAAGGGAACAGAGAACAACAATTCCATCTTTGGTTTGATCCTACAAACGCCTTCCACACCTACTCGCTTGTCTGGAACAGCCAACGCATTATATTCTTGGTGGATAATATTCCAATTAGAGTGTTCAACAACTTGGAGTCAGTTGGTGTTCCATTCCCCAAAAACCAACCGATGAGGATTTACTCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGTGGGCGTGTGAAGACTGATTGGACTCATGCTCCTTTCACTGCCTCTTACAGAAACTTCAAGGCCAATGCTTGCGTCGCTGGCTCATCGTCATCATCATGCGGTGTCTCCACTACTGCTTCAACTAATTCCTTAACTGATCAACAGAGTGCATGGCAGAATCAAGGTCTAGATGCCGCAGGCCGAAACAGGATTCGATGGGTGCATCAGAAGTTCATGGTCTACAACTACTGTGCTGACCTAGAACGATTTCCCCAAGGTCTTCCGGTAGAATGTACACGATCAAGGTTCTAG

Protein Analysis

297

Amino Acids

33.26

Weight (kDa)

6.59

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 30 - 209 1.3e-66 Glycosyl hydrolases family 16
XET_C PF06955 249 - 292 1.9e-17 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 822
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 2 cut(s) 702, 777
AclWI GGATC 2 cut(s) 227, 413
AcsI RAATTY 1 cut(s) 52
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 2 cut(s) 206, 877
AgsI TTSAA 4 cut(s) 190, 508, 661, 723
AjnI CCWGG 1 cut(s) 375
AleI CACNNNNGTG 1 cut(s) 365
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
Alw26I GTCTC 2 cut(s) 22, 712
AlwI GGATC 2 cut(s) 227, 413
Ama87I CYCGRG 1 cut(s) 565
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 2 cut(s) 663, 781
ApeKI GCWGC 2 cut(s) 71, 74
ApoI RAATTY 1 cut(s) 52
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
Asp700I GAANNNNTTC 1 cut(s) 849
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 565
AvaII GGWCC 1 cut(s) 293
BbsI GAAGAC 4 cut(s) 99, 276, 620, 854
BbvI GCAGC 2 cut(s) 58, 86
BccI CCATC 2 cut(s) 414, 792
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 1 cut(s) 377
BclI TGATCA 1 cut(s) 739
BcoDI GTCTC 2 cut(s) 22, 712
BfaI CTAG 3 cut(s) 770, 842, 892
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 3 cut(s) 72, 75, 777
BlsI GCNGC 3 cut(s) 73, 76, 778
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 3 cut(s) 15, 763, 814
BpiI GAAGAC 4 cut(s) 99, 276, 620, 854
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpuEI CTTGAG 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 376, 856
BsaWI WCCGGW 2 cut(s) 176, 865
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 169, 187
BseAI TCCGGA 1 cut(s) 176
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 2 cut(s) 376, 856
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 169, 187
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 58, 86
BshFI GGCC 2 cut(s) 665, 783
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 3 cut(s) 78, 177, 866
BsmAI GTCTC 2 cut(s) 22, 712
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 2 cut(s) 665, 783
Bso31I GGTCTC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 565
Bsp13I TCCGGA 1 cut(s) 176
Bsp1407I TGTACA 1 cut(s) 875
Bsp143I GATC 4 cut(s) 219, 418, 739, 881
BspACI CCGC 2 cut(s) 702, 777
BspANI GGCC 2 cut(s) 665, 783
BspCNI CTCAG 1 cut(s) 32
BspEI TCCGGA 1 cut(s) 176
BspHI TCATGA 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 2 cut(s) 227, 413
BspTNI GGTCTC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 875
BsrI ACTGG 2 cut(s) 169, 187
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 376, 856
BssMI GATC 4 cut(s) 219, 418, 739, 881
BssT1I CCWWGG 1 cut(s) 856
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 265, 833
Bst6I CTCTTC 1 cut(s) 340
BstAUI TGTACA 1 cut(s) 875
BstC8I GCNNGC 5 cut(s) 247, 259, 673, 682, 781
BstDEI CTNAG 3 cut(s) 12, 19, 126
BstKTI GATC 4 cut(s) 222, 421, 742, 884
BstMAI GTCTC 2 cut(s) 22, 712
BstMBI GATC 4 cut(s) 219, 418, 739, 881
BstMWI GCNNNNNNNGC 2 cut(s) 677, 681
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 58, 86
BstV2I GAAGAC 4 cut(s) 99, 276, 620, 854
BsuRI GGCC 2 cut(s) 665, 783
BtsI GCAGTG 2 cut(s) 267, 639
BtsIMutI CAGTG 4 cut(s) 27, 261, 267, 639
Cac8I GCNNGC 5 cut(s) 247, 259, 673, 682, 781
CciI TCATGA 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 664
Csp6I GTAC 2 cut(s) 205, 876
CviAII CATG 8 cut(s) 61, 67, 226, 302, 629, 699, 753, 817
CviJI RGCY 9 cut(s) 71, 77, 257, 375, 462, 593, 665, 684, 783
CviKI_1 RGCY 9 cut(s) 71, 77, 257, 375, 462, 593, 665, 684, 783
CviQI GTAC 2 cut(s) 205, 876
DdeI CTNAG 3 cut(s) 12, 19, 126
DpnI GATC 4 cut(s) 221, 420, 741, 883
DpnII GATC 4 cut(s) 219, 418, 739, 881
DraIII CACNNNGTG 1 cut(s) 602
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 856
Eco31I GGTCTC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 856
ErhI CCWWGG 1 cut(s) 856
FaeI CATG 8 cut(s) 64, 70, 229, 305, 632, 702, 756, 820
FatI CATG 8 cut(s) 60, 66, 225, 301, 628, 698, 752, 816
FbaI TGATCA 1 cut(s) 739
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 3 cut(s) 72, 75, 777
Fsp4HI GCNGC 3 cut(s) 72, 75, 777
FspBI CTAG 3 cut(s) 770, 842, 892
GluI GCNGC 3 cut(s) 72, 75, 777
HaeIII GGCC 2 cut(s) 665, 783
HapII CCGG 3 cut(s) 78, 177, 866
HgaI GACGC 1 cut(s) 664
Hin1II CATG 8 cut(s) 64, 70, 229, 305, 632, 702, 756, 820
HinfI GANTC 5 cut(s) 518, 568, 625, 760, 793
HpaII CCGG 3 cut(s) 78, 177, 866
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 3 cut(s) 344, 823, 878
Hpy188I TCNGA 1 cut(s) 810
Hpy188III TCNNGA 4 cut(s) 177, 302, 454, 770
Hpy8I GTNNAC 3 cut(s) 344, 823, 878
Hpy99I CGWCG 1 cut(s) 680
HpyAV CCTTC 2 cut(s) 210, 442
HpyCH4III ACNGT 2 cut(s) 265, 833
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 5 cut(s) 74, 229, 272, 752, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 677, 681
HpyF3I CTNAG 3 cut(s) 12, 19, 126
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 8 cut(s) 64, 70, 229, 305, 632, 702, 756, 820
Kpn2I TCCGGA 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 739
Kzo9I GATC 4 cut(s) 219, 418, 739, 881
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 2 cut(s) 58, 86
LweI GCATC 3 cut(s) 15, 763, 814
MaeI CTAG 3 cut(s) 770, 842, 892
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 265
MalI GATC 4 cut(s) 221, 420, 741, 883
MboI GATC 4 cut(s) 219, 418, 739, 881
MboII GAAGA 5 cut(s) 104, 276, 327, 625, 854
MluCI AATT 5 cut(s) 52, 82, 401, 495, 727
MlyI GAGTC 3 cut(s) 527, 577, 619
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 6 cut(s) 19, 134, 161, 173, 549, 655
MroI TCCGGA 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 849
MseI TTAA 2 cut(s) 50, 734
MslI CAYNNNNRTG 4 cut(s) 65, 363, 365, 697
MspI CCGG 3 cut(s) 78, 177, 866
MspR9I CCNGG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 2 cut(s) 677, 681
NdeII GATC 4 cut(s) 219, 418, 739, 881
NlaIII CATG 8 cut(s) 64, 70, 229, 305, 632, 702, 756, 820
NmeAIII GCCGAG 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 229
OliI CACNNNNGTG 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 565
PagI TCATGA 1 cut(s) 301
PctI GAATGC 1 cut(s) 583
PdmI GAANNNNTTC 1 cut(s) 849
PfeI GAWTC 2 cut(s) 760, 793
PkrI GCNGC 3 cut(s) 73, 76, 778
PleI GAGTC 3 cut(s) 526, 576, 619
PpsI GAGTC 3 cut(s) 526, 576, 619
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspPI GGNCC 1 cut(s) 293
PspXI VCTCGAGB 1 cut(s) 565
PstI CTGCAG 1 cut(s) 76
RsaI GTAC 2 cut(s) 206, 877
RsaNI GTAC 2 cut(s) 205, 876
RseI CAYNNNNRTG 4 cut(s) 65, 363, 365, 697
SaqAI TTAA 2 cut(s) 50, 734
SatI GCNGC 3 cut(s) 72, 75, 777
Sau3AI GATC 4 cut(s) 219, 418, 739, 881
Sau96I GGNCC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 3 cut(s) 527, 577, 619
ScrFI CCNGG 1 cut(s) 377
SfaNI GCATC 3 cut(s) 15, 763, 814
SfcI CTRYAG 1 cut(s) 72
Sfr274I CTCGAG 1 cut(s) 565
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 565
SmiMI CAYNNNNRTG 4 cut(s) 65, 363, 365, 697
SmlI CTYRAG 2 cut(s) 288, 565
SmoI CTYRAG 2 cut(s) 288, 565
Sse9I AATT 5 cut(s) 52, 82, 401, 495, 727
SsiI CCGC 2 cut(s) 702, 777
SspI AATATT 1 cut(s) 490
SspMI CTAG 3 cut(s) 770, 842, 892
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 1 cut(s) 856
TaaI ACNGT 2 cut(s) 265, 833
TaiI ACGT 1 cut(s) 124
TaqI TCGA 7 cut(s) 159, 165, 222, 312, 318, 566, 796
TasI AATT 5 cut(s) 52, 82, 401, 495, 727
TatI WGTACW 2 cut(s) 204, 875
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 2 cut(s) 760, 793
Tru1I TTAA 2 cut(s) 50, 734
Tru9I TTAA 2 cut(s) 50, 734
TscAI CASTG 4 cut(s) 27, 268, 274, 646
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 71, 74
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 4 cut(s) 49, 105, 321, 805
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 4 cut(s) 27, 268, 274, 646
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 52
XbaI TCTAGA 1 cut(s) 769
XceI RCATGY 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 822
XmnI GAANNNNTTC 1 cut(s) 849
XspI CTAG 3 cut(s) 770, 842, 892
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.