Rh2DG509900

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
73418486 .. 73419612
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG509900.1

Sequence Viewer

Length: 891 bp
ATGTCTTCTTCTAAGGTTTCCATGGTGCTTCTTCTTTCTTTGTTCATAGCTTCTATTCTAGCCATGACTGCCTTAGCTGGCAATTTCTTTCAAGATTTTGACATCACTTTTGGAGATCAACGCGTTAAAATACTCGAAGGAGGAAAGTTTCTCACGCTCAACCTCGACCAGTATTCTGGCTCTGGTTTCAAATCCAAGAACGAGTACTTATTCGGAAGGATCGACATGCAAATCAAACTTGTGCCTGGAAACTCAGCTGGCACTGTCACTACATACTATTTATCTTCTGAAGGTCCAACTCATGATGAAATCGACTTCGAGTTTTTGGGCAACTCATCTGGAGATCCCTACACTCTCCACACCAATGTATTCAGTCAGGGAAAAGGGGACAGAGAACAACAATTCCATCTTTGGTTTGATCCCACAAAGGCCTTCCACACCTATTCATTTGTCTGGAACTCCAAACGCATTATATTCTTTGTCGACAACATTCCAGTCCGAGTGTTCAACAACTTGGAATCATTTGGTGTTCCATTCCCCAAAAACCAACCAATGAGGATTTACTCGAGTCTATGGAATGCCGATGACTGGGCTACGCAAGGCGGGCGTGTGAAGACTGACTGGACTCAGGCACCTTTCACTGCTTCTTACAGAAATTTCAAGGCCAATGCTTGTGCTGCTGGCTCATCATCCTCTTGCATTGTCTCCACCACTGCATCAACTAATTCCCTAACAGATCAACAGAGTGCATGGCAGACTCAAACGCTTGATGCTGCAGGCCGAAACAGGCTTCGATGGGTGCAACACAAGTTCATGGTGTACAACTACTGCTCTGACCTCAAACGATTCCCTCAAGGCGTACCAGCCGAGTGCAAGCAATCAAGGTTCTAG

Protein Analysis

296

Amino Acids

33.39

Weight (kDa)

8.58

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 31 - 209 8.7e-66 Glycosyl hydrolases family 16
XET_C PF06955 248 - 291 2e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 631
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 603
AclWI GGATC 3 cut(s) 227, 338, 413
AcsI RAATTY 1 cut(s) 655
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 3 cut(s) 206, 821, 861
AfiI CCNNNNNNNGG 1 cut(s) 588
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 4 cut(s) 92, 190, 508, 661
AjnI CCWGG 1 cut(s) 244
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 3 cut(s) 50, 77, 257
AluI AGCT 3 cut(s) 50, 77, 257
Alw26I GTCTC 1 cut(s) 709
AlwI GGATC 3 cut(s) 227, 338, 413
Ama87I CYCGRG 1 cut(s) 565
AoxI GGCC 3 cut(s) 429, 663, 778
ApeKI GCWGC 2 cut(s) 677, 773
ApoI RAATTY 1 cut(s) 655
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspS9I GGNCC 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 565
AvaII GGWCC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 631
BbsI GAAGAC 1 cut(s) 620
BbvI GCAGC 2 cut(s) 664, 760
BccI CCATC 2 cut(s) 414, 789
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 709
BfaI CTAG 2 cut(s) 59, 889
BfmI CTRYAG 1 cut(s) 774
BisI GCNGC 2 cut(s) 678, 774
BlsI GCNGC 2 cut(s) 679, 775
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 633
BmrFI CCNGG 1 cut(s) 246
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 2 cut(s) 725, 760
BmuI ACTGGG 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 620
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 837
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 588
Bse1I ACTGG 4 cut(s) 169, 494, 593, 626
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 689
BseLI CCNNNNNNNGG 1 cut(s) 588
BseMII CTCAG 2 cut(s) 267, 641
BseNI ACTGG 4 cut(s) 169, 494, 593, 626
BseXI GCAGC 2 cut(s) 664, 760
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 431, 665, 780
BshNI GGYRCC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 565
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 588
BsmAI GTCTC 1 cut(s) 709
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 3 cut(s) 431, 665, 780
BsoBI CYCGRG 1 cut(s) 565
Bsp1407I TGTACA 1 cut(s) 819
Bsp143I GATC 5 cut(s) 115, 219, 343, 418, 736
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 1 cut(s) 603
BspANI GGCC 3 cut(s) 431, 665, 780
BspCNI CTCAG 2 cut(s) 266, 640
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 633
BspMAI CTGCAG 1 cut(s) 778
BspPI GGATC 3 cut(s) 227, 338, 413
BspT107I GGYRCC 1 cut(s) 631
BsrGI TGTACA 1 cut(s) 819
BsrI ACTGG 4 cut(s) 169, 494, 593, 626
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 5 cut(s) 115, 219, 343, 418, 736
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 265
BstAUI TGTACA 1 cut(s) 819
BstC8I GCNNGC 6 cut(s) 79, 259, 605, 682, 778, 875
BstDEI CTNAG 4 cut(s) 12, 73, 253, 627
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 689
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 5 cut(s) 118, 222, 346, 421, 739
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 5 cut(s) 115, 219, 343, 418, 736
BstMWI GCNNNNNNNGC 3 cut(s) 68, 604, 677
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 774
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 664, 760
BstV2I GAAGAC 1 cut(s) 620
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 176
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 3 cut(s) 431, 665, 780
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 689
BtsI GCAGTG 2 cut(s) 639, 711
BtsIMutI CAGTG 3 cut(s) 261, 639, 711
Cac8I GCNNGC 6 cut(s) 79, 259, 605, 682, 778, 875
CciI TCATGA 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 3 cut(s) 205, 820, 860
CviAII CATG 6 cut(s) 22, 64, 226, 302, 750, 814
CviQI GTAC 3 cut(s) 205, 820, 860
DdeI CTNAG 4 cut(s) 12, 73, 253, 627
DpnI GATC 5 cut(s) 117, 221, 345, 420, 738
DpnII GATC 5 cut(s) 115, 219, 343, 418, 736
Eco130I CCWWGG 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 6 cut(s) 25, 67, 229, 305, 753, 817
FaqI GGGAC 1 cut(s) 401
FatI CATG 6 cut(s) 21, 63, 225, 301, 749, 813
FauI CCCGC 1 cut(s) 596
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 2 cut(s) 678, 774
FokI GGATG 1 cut(s) 676
Fsp4HI GCNGC 2 cut(s) 678, 774
FspBI CTAG 2 cut(s) 59, 889
GluI GCNGC 2 cut(s) 678, 774
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 3 cut(s) 431, 665, 780
Hin1II CATG 6 cut(s) 25, 67, 229, 305, 753, 817
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 5 cut(s) 518, 568, 625, 757, 846
Hpy166II GTNNAC 2 cut(s) 484, 820
Hpy188I TCNGA 4 cut(s) 215, 289, 500, 835
Hpy188III TCNNGA 4 cut(s) 92, 302, 339, 454
Hpy8I GTNNAC 2 cut(s) 484, 820
HpyAV CCTTC 4 cut(s) 131, 210, 284, 442
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 7 cut(s) 229, 699, 716, 749, 776, 802, 873
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 604, 677
HpyF3I CTNAG 4 cut(s) 12, 73, 253, 627
Hsp92II CATG 6 cut(s) 25, 67, 229, 305, 753, 817
Kzo9I GATC 5 cut(s) 115, 219, 343, 418, 736
Lsp1109I GCAGC 2 cut(s) 664, 760
LweI GCATC 2 cut(s) 725, 760
MaeI CTAG 2 cut(s) 59, 889
MaeIII GTNAC 1 cut(s) 265
MalI GATC 5 cut(s) 117, 221, 345, 420, 738
MboI GATC 5 cut(s) 115, 219, 343, 418, 736
MboII GAAGA 3 cut(s) 23, 276, 625
MflI RGATCY 1 cut(s) 343
MluCI AATT 4 cut(s) 82, 401, 655, 724
MluI ACGCGT 1 cut(s) 121
MlyI GAGTC 3 cut(s) 577, 619, 751
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 6 cut(s) 134, 173, 549, 703, 848, 861
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 68, 604, 677
NcoI CCATGG 1 cut(s) 21
NdeII GATC 5 cut(s) 115, 219, 343, 418, 736
NlaIII CATG 6 cut(s) 25, 67, 229, 305, 753, 817
NlaIV GGNNCC 1 cut(s) 633
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 565
PagI TCATGA 1 cut(s) 301
PceI AGGCCT 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 583
PfeI GAWTC 2 cut(s) 518, 846
PkrI GCNGC 2 cut(s) 679, 775
PleI GAGTC 3 cut(s) 576, 619, 751
PpsI GAGTC 3 cut(s) 576, 619, 751
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 633
PspPI GGNCC 1 cut(s) 293
PspXI VCTCGAGB 1 cut(s) 565
PstI CTGCAG 1 cut(s) 778
PsuI RGATCY 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 3 cut(s) 206, 821, 861
RsaNI GTAC 3 cut(s) 205, 820, 860
RseI CAYNNNNRTG 1 cut(s) 363
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 678, 774
Sau3AI GATC 5 cut(s) 115, 219, 343, 418, 736
Sau96I GGNCC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 3 cut(s) 577, 619, 751
ScrFI CCNGG 1 cut(s) 246
SfaNI GCATC 2 cut(s) 725, 760
SfcI CTRYAG 1 cut(s) 774
Sfr274I CTCGAG 1 cut(s) 565
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 565
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 565, 852
SmoI CTYRAG 2 cut(s) 565, 852
Sse9I AATT 4 cut(s) 82, 401, 655, 724
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 1 cut(s) 603
SspMI CTAG 2 cut(s) 59, 889
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 8 cut(s) 135, 165, 222, 312, 318, 483, 566, 793
TasI AATT 4 cut(s) 82, 401, 655, 724
TatI WGTACW 2 cut(s) 204, 819
TfiI GAWTC 2 cut(s) 518, 846
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 3 cut(s) 268, 646, 718
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 677, 773
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 4 cut(s) 34, 321, 435, 802
TspRI CASTG 3 cut(s) 268, 646, 718
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 655
XceI RCATGY 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 2 cut(s) 59, 889
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.