RLG00000020547

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
66140590 .. 66142121
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020547

Sequence Viewer

Length: 924 bp
ATGTCTTCTTCTAAGGTCTCCATGATGCTTCTAATGCTTTCTCTGGCCTCAAGTAGTTATCTGTTAATGGCTACCTCATCAGGTGGTGATTTCTTCCGAGACATTGATGTTACTTTTGGCGATCAACGTGCTAAGATACTCGACGGAGGACAACTACTCACGCTCAGCCTTGACAAGATTTCTGGGTCTGGCTTCAAGTCTAAGAACGAGTACTTGTTTGGTAGGATCGACATGCAAATAAAGCTCGTGCCTGGTAACTCAGCTGGCACTGTCACCACATACTATTTATCTTCTGAAGGTCTAACTCACGATGAGATTGATTTCGAGTTTCTGGGCAACTCAACTGGAAATCCTTACACTGTCCACACCAATGTGTTCAGTCAGGGCAAAGGGGGAAGAGAGCAACAATTCCATCTTTGGTTTGATCCCACAAAAGCCTTCCACACTTACTCCATTCTTTGGAACACCCACCGCATTATATTTTTCGTGGACAACATTCCAATTAGGGTGTTCGACAATTTGGAATCAATTGGGCTTCCATTCCCCAAAAAGCAACCAATGAGGATTTACTCAAGTTTGTGGAATGCTGACGACTGGGCAACACAAGGTGGTCTTGTGAAGACAGACTGGGCACAAGCTCCTTTCACTGCCTCTTACAGGAATTTAAAGGCCAATGCTTGTCTTGCTGGCTCATCATCGTCATCATCTAGTTGTGTCTCCACTACGGCAGAGGACAAATCATGGCAGAACCAAGCGCTTGATGCTGCAGGTAGAAAGAGGCTTCGATGGGTGCAAAAGAAGTTCATGGTTTACAACTACTGTTCTGATCGTAAACGATTCCCGCAAGGTTTTCCACTGGAATGCAAGCGGTCAAGGTTCTATATATGTAATGATGATCATGAGATTTCTATACGTTTATTGTGA

Protein Analysis

308

Amino Acids

34.65

Weight (kDa)

8.85

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 34 - 211 9e-65 Glycosyl hydrolases family 16
XET_C PF06955 245 - 288 1e-20 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 758
AccB7I CCANNNNNTGG 1 cut(s) 459
AciI CCGC 3 cut(s) 472, 842, 868
AclWI GGATC 2 cut(s) 233, 419
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 1 cut(s) 315
AdeI CACNNNGTG 1 cut(s) 608
AfaI GTAC 1 cut(s) 212
AfeI AGCGCT 1 cut(s) 756
AfiI CCNNNNNNNGG 2 cut(s) 459, 657
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 250
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 3 cut(s) 244, 263, 638
AluI AGCT 3 cut(s) 244, 263, 638
Alw26I GTCTC 3 cut(s) 22, 93, 721
AlwI GGATC 2 cut(s) 233, 419
Aor51HI AGCGCT 1 cut(s) 756
AoxI GGCC 2 cut(s) 45, 669
ApeKI GCWGC 1 cut(s) 764
ApoI RAATTY 1 cut(s) 661
AspLEI GCGC 1 cut(s) 757
AsuHPI GGTGA 2 cut(s) 98, 265
BaeGI GKGCMC 1 cut(s) 634
BauI CACGAG 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 751
BccI CCATC 2 cut(s) 420, 780
BceAI ACGGC 1 cut(s) 741
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BciT130I CCWGG 1 cut(s) 252
BclI TGATCA 1 cut(s) 895
BcoDI GTCTC 3 cut(s) 22, 93, 721
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 1 cut(s) 765
BfoI RGCGCY 1 cut(s) 758
BfuAI ACCTGC 1 cut(s) 758
BisI GCNGC 1 cut(s) 765
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 766
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 252
BmrI ACTGGG 2 cut(s) 604, 637
BmsI GCATC 2 cut(s) 15, 751
BmuI ACTGGG 2 cut(s) 604, 637
BpiI GAAGAC 1 cut(s) 626
Bpu1102I GCTNAGC 1 cut(s) 164
BpuEI CTTGAG 2 cut(s) 34, 556
BsaI GGTCTC 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 459, 657
Bse1I ACTGG 4 cut(s) 349, 599, 632, 861
BseBI CCWGG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 459, 657
BseMII CTCAG 2 cut(s) 178, 273
BseNI ACTGG 4 cut(s) 349, 599, 632, 861
BseSI GKGCMC 1 cut(s) 634
BseXI GCAGC 1 cut(s) 751
BshFI GGCC 2 cut(s) 47, 671
BslI CCNNNNNNNGG 2 cut(s) 459, 657
BsmAI GTCTC 3 cut(s) 22, 93, 721
BsmI GAATGC 2 cut(s) 589, 866
BsnI GGCC 2 cut(s) 47, 671
Bso31I GGTCTC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 634
Bsp143I GATC 5 cut(s) 121, 225, 424, 826, 895
Bsp1720I GCTNAGC 1 cut(s) 164
BspACI CCGC 3 cut(s) 472, 842, 868
BspANI GGCC 2 cut(s) 47, 671
BspCNI CTCAG 2 cut(s) 177, 272
BspHI TCATGA 1 cut(s) 898
BspMAI CTGCAG 1 cut(s) 769
BspMI ACCTGC 1 cut(s) 758
BspPI GGATC 2 cut(s) 233, 419
BspTNI GGTCTC 1 cut(s) 22
BsrI ACTGG 4 cut(s) 349, 599, 632, 861
BssMI GATC 5 cut(s) 121, 225, 424, 826, 895
BssSI CACGAG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 3 cut(s) 271, 361, 821
Bst6I CTCTTC 1 cut(s) 391
BstC8I GCNNGC 3 cut(s) 265, 688, 866
BstDEI CTNAG 5 cut(s) 12, 132, 164, 201, 259
BstENI CCTNNNNNAGG 1 cut(s) 655
BstH2I RGCGCY 1 cut(s) 758
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 5 cut(s) 124, 228, 427, 829, 898
BstMAI GTCTC 3 cut(s) 22, 93, 721
BstMBI GATC 5 cut(s) 121, 225, 424, 826, 895
BstMWI GCNNNNNNNGC 4 cut(s) 34, 241, 683, 761
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 765
BstSLI GKGCMC 1 cut(s) 634
BstV1I GCAGC 1 cut(s) 751
BstV2I GAAGAC 1 cut(s) 626
BsuRI GGCC 2 cut(s) 47, 671
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 4 cut(s) 267, 357, 645, 854
BveI ACCTGC 1 cut(s) 758
Cac8I GCNNGC 3 cut(s) 265, 688, 866
CciI TCATGA 1 cut(s) 898
CfoI GCGC 1 cut(s) 757
Csp6I GTAC 1 cut(s) 211
CviAII CATG 5 cut(s) 22, 232, 741, 805, 899
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 5 cut(s) 12, 132, 164, 201, 259
DpnI GATC 5 cut(s) 123, 227, 426, 828, 897
DpnII GATC 5 cut(s) 121, 225, 424, 826, 895
DraI TTTAAA 1 cut(s) 666
DraIII CACNNNGTG 1 cut(s) 608
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
Eco31I GGTCTC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 756
Eco57I CTGAAG 1 cut(s) 315
EcoNI CCTNNNNNAGG 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 5 cut(s) 25, 235, 744, 808, 902
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FatI CATG 5 cut(s) 21, 231, 740, 804, 898
FauI CCCGC 1 cut(s) 849
FbaI TGATCA 1 cut(s) 895
Fnu4HI GCNGC 1 cut(s) 765
Fsp4HI GCNGC 1 cut(s) 765
FspBI CTAG 1 cut(s) 708
GlaI GCGC 1 cut(s) 756
GluI GCNGC 1 cut(s) 765
HaeII RGCGCY 1 cut(s) 758
HaeIII GGCC 2 cut(s) 47, 671
HhaI GCGC 1 cut(s) 757
Hin1II CATG 5 cut(s) 25, 235, 744, 808, 902
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HinfI GANTC 2 cut(s) 524, 837
HphI GGTGA 2 cut(s) 98, 265
Hpy166II GTNNAC 4 cut(s) 364, 490, 811, 833
Hpy188I TCNGA 3 cut(s) 98, 295, 826
Hpy188III TCNNGA 2 cut(s) 308, 899
Hpy8I GTNNAC 4 cut(s) 364, 490, 811, 833
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 290, 448
HpyCH4III ACNGT 3 cut(s) 271, 361, 821
HpyCH4IV ACGT 2 cut(s) 127, 913
HpyCH4V TGCA 4 cut(s) 235, 767, 793, 864
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 241, 683, 761
HpyF3I CTNAG 5 cut(s) 12, 132, 164, 201, 259
HpySE526I ACGT 2 cut(s) 127, 913
Hsp92II CATG 5 cut(s) 25, 235, 744, 808, 902
HspAI GCGC 1 cut(s) 755
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 5 cut(s) 121, 225, 424, 826, 895
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 1 cut(s) 751
LweI GCATC 2 cut(s) 15, 751
MaeI CTAG 1 cut(s) 708
MaeII ACGT 2 cut(s) 127, 913
MaeIII GTNAC 3 cut(s) 109, 254, 271
MalI GATC 5 cut(s) 123, 227, 426, 828, 897
MboI GATC 5 cut(s) 121, 225, 424, 826, 895
MboII GAAGA 4 cut(s) 85, 282, 408, 631
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 634
MluCI AATT 5 cut(s) 407, 501, 517, 528, 661
MnlI CCTC 7 cut(s) 58, 85, 140, 555, 661, 724, 771
MseI TTAA 2 cut(s) 65, 665
MslI CAYNNNNRTG 3 cut(s) 369, 371, 859
MspA1I CMGCKG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 528
Mva1269I GAATGC 2 cut(s) 589, 866
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 4 cut(s) 34, 241, 683, 761
NdeII GATC 5 cut(s) 121, 225, 424, 826, 895
NlaIII CATG 5 cut(s) 25, 235, 744, 808, 902
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 371
PagI TCATGA 1 cut(s) 898
PctI GAATGC 2 cut(s) 589, 866
PfeI GAWTC 2 cut(s) 524, 837
PflMI CCANNNNNTGG 1 cut(s) 459
PkrI GCNGC 1 cut(s) 766
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PstI CTGCAG 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 3 cut(s) 369, 371, 859
SaqAI TTAA 2 cut(s) 65, 665
SatI GCNGC 1 cut(s) 765
Sau3AI GATC 5 cut(s) 121, 225, 424, 826, 895
ScaI AGTACT 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 634
SfaNI GCATC 2 cut(s) 15, 751
SfcI CTRYAG 1 cut(s) 765
SmiMI CAYNNNNRTG 3 cut(s) 369, 371, 859
SmlI CTYRAG 2 cut(s) 49, 571
SmoI CTYRAG 2 cut(s) 49, 571
Sse9I AATT 5 cut(s) 407, 501, 517, 528, 661
SsiI CCGC 3 cut(s) 472, 842, 868
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 271, 361, 821
TaiI ACGT 2 cut(s) 130, 916
TaqI TCGA 5 cut(s) 141, 228, 324, 513, 784
TasI AATT 5 cut(s) 407, 501, 517, 528, 661
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 2 cut(s) 524, 837
Tru1I TTAA 2 cut(s) 65, 665
Tru9I TTAA 2 cut(s) 65, 665
TscAI CASTG 4 cut(s) 274, 364, 652, 861
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 764
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 793
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 4 cut(s) 274, 364, 652, 861
Van91I CCANNNNNTGG 1 cut(s) 459
XagI CCTNNNNNAGG 1 cut(s) 655
XapI RAATTY 1 cut(s) 661
XceI RCATGY 1 cut(s) 235
XspI CTAG 1 cut(s) 708
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.