Rroxscaffold_2G00096470

xyloglucan:xyloglucosyl transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000406
Physical Location & Seq
Reverse (-)
17698112 .. 17699977
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096470.1

Sequence Viewer

Length: 771 bp
ATGATTGCCGGCATAGCTGCCTCAGCTAATTTCTGGGAAGACTTTGAACAAACATACGGCGACCAGCGTCTTCAATTACTTGATGGAGGGAAACATTTCACACTGAGCCAGGACGCGAATTCTGGGGCGGGATTCAAATCCAAGAACGAATACCTATTTGGACGTTTCGACATGGATATGAAGCTCGCGCCTGGGAACTCAGCTGGTACTGTCACCACATTTTATTTATCTTCTCCTCAAGGGCATGAACACGATGAGATAGACATAGAGTTTTTGGGCAACTCTTCTGGGAGTCCATGGATGGTGGATAACAGTCCCATTAGGATTTTCAGCAACGTCGAAGCATCACTTGGTGTTCCATATCCTCATAGCAAACCGATGAGGATTTACTGCAGCTTCTGGAATGCCGATGACTGGGCTACACAAGGTGGAAAAGTAAAGGCCGACTGGTCTCAAGGTTCTAAAACAGTCTCTTACAAAGACCACAAGATCAATGCTTGTCTTCCTTGGGATCAGGGCTGTGCTTCGAACACAGCCGGCAATTCATGGCAGAATATTGATCTTGGTCGTTTAGGTCATGATAGGCTTCGATGGGTACAAGAGAAGTACAGGGTCAGCAACTACTGTGACCCCAGTAAATCTCCCCAAGGTGTCCTGCCACGCGAGTGTATGCACTCCGAGTTTCAGAGCCCCCCAAATCCTAACCCTGCAAATCCCAGCGCTCCCAACATTCCCGACCTTAAAAATCCCGGCAACAAACCCAAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

256

Amino Acids

28.45

Weight (kDa)

5.96

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 13 - 97 8.8e-22 Glycosyl hydrolases family 16
Glyco_hydro_16 PF00722 100 - 151 3.5e-13 Glycosyl hydrolases family 16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 116, 188, 663
AciI CCGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 519
AcsI RAATTY 1 cut(s) 118
AdeI CACNNNGTG 2 cut(s) 353, 428
AfaI GTAC 3 cut(s) 208, 597, 608
AfeI AGCGCT 1 cut(s) 721
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 3 cut(s) 47, 74, 136
AjnI CCWGG 2 cut(s) 108, 190
AjuI GAANNNNNNNTTGG 4 cut(s) 141, 173, 333, 365
AleI CACNNNNGTG 1 cut(s) 664
AluBI AGCT 5 cut(s) 17, 26, 184, 203, 396
AluI AGCT 5 cut(s) 17, 26, 184, 203, 396
Alw26I GTCTC 2 cut(s) 456, 475
AlwI GGATC 1 cut(s) 519
AlwNI CAGNNNCTG 1 cut(s) 399
Aor51HI AGCGCT 1 cut(s) 721
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 17, 393
ApoI RAATTY 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 190, 722
AsuC2I CCSGG 1 cut(s) 750
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 1 cut(s) 527
BanII GRGCYC 1 cut(s) 692
BbsI GAAGAC 3 cut(s) 45, 62, 494
BbvCI CCTCAGC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 4, 405
BccI CCATC 3 cut(s) 77, 295, 585
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 2 cut(s) 110, 192
BcnI CCSGG 1 cut(s) 750
BcoDI GTCTC 2 cut(s) 456, 475
BfaI CTAG 1 cut(s) 769
BfmI CTRYAG 1 cut(s) 391
BfoI RGCGCY 1 cut(s) 723
BisI GCNGC 2 cut(s) 18, 394
BlsI GCNGC 2 cut(s) 19, 395
Bme1390I CCNGG 3 cut(s) 110, 192, 750
BmrFI CCNGG 3 cut(s) 110, 192, 750
BmrI ACTGGG 2 cut(s) 424, 627
BmsI GCATC 1 cut(s) 353
BmuI ACTGGG 2 cut(s) 424, 627
BoxI GACNNNNGTC 1 cut(s) 66
BpiI GAAGAC 3 cut(s) 45, 62, 494
Bpu10I CCTNAGC 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 527
BpuEI CTTGAG 2 cut(s) 222, 438
BpuMI CCSGG 1 cut(s) 750
BsaBI GATNNNNATC 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 4 cut(s) 191, 296, 506, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse118I RCCGGY 2 cut(s) 8, 536
Bse1I ACTGG 3 cut(s) 419, 452, 633
Bse8I GATNNNNATC 1 cut(s) 136
BseBI CCWGG 2 cut(s) 110, 192
BseDI CCNNGG 4 cut(s) 191, 296, 506, 646
BseGI GGATG 1 cut(s) 306
BseJI GATNNNNATC 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMII CTCAG 3 cut(s) 36, 95, 213
BseNI ACTGG 3 cut(s) 419, 452, 633
BseRI GAGGAG 1 cut(s) 225
BseXI GCAGC 2 cut(s) 4, 405
BseYI CCCAGC 1 cut(s) 716
Bsh1236I CGCG 3 cut(s) 116, 188, 663
BshFI GGCC 1 cut(s) 443
BsiSI CCGG 3 cut(s) 9, 537, 750
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 414
BsmAI GTCTC 2 cut(s) 456, 475
BsmFI GGGAC 1 cut(s) 300
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 1 cut(s) 443
Bso31I GGTCTC 1 cut(s) 456
Bsp119I TTCGAA 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 3 cut(s) 489, 511, 559
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 3 cut(s) 35, 96, 212
BspFNI CGCG 3 cut(s) 116, 188, 663
BspHI TCATGA 1 cut(s) 577
BspMAI CTGCAG 1 cut(s) 395
BspPI GGATC 1 cut(s) 519
BspT104I TTCGAA 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 456
BsrFI RCCGGY 2 cut(s) 8, 536
BsrI ACTGG 3 cut(s) 419, 452, 633
BssAI RCCGGY 2 cut(s) 8, 536
BssECI CCNNGG 4 cut(s) 191, 296, 506, 646
BssMI GATC 3 cut(s) 489, 511, 559
BssT1I CCWWGG 3 cut(s) 296, 506, 646
Bst2UI CCWGG 2 cut(s) 110, 192
Bst4CI ACNGT 4 cut(s) 211, 314, 469, 626
Bst6I CTCTTC 1 cut(s) 289
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 3 cut(s) 10, 186, 538
BstDEI CTNAG 3 cut(s) 22, 104, 199
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 306
BstFNI CGCG 3 cut(s) 116, 188, 663
BstH2I RGCGCY 1 cut(s) 723
BstHHI GCGC 2 cut(s) 190, 722
BstKTI GATC 3 cut(s) 492, 514, 562
BstMAI GTCTC 2 cut(s) 456, 475
BstMBI GATC 3 cut(s) 489, 511, 559
BstMWI GCNNNNNNNGC 2 cut(s) 14, 23
BstNI CCWGG 2 cut(s) 110, 192
BstPAI GACNNNNGTC 1 cut(s) 66
BstSCI CCNGG 3 cut(s) 108, 190, 748
BstSFI CTRYAG 1 cut(s) 391
BstUI CGCG 3 cut(s) 116, 188, 663
BstV1I GCAGC 2 cut(s) 4, 405
BstV2I GAAGAC 3 cut(s) 45, 62, 494
BsuRI GGCC 1 cut(s) 443
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 3 cut(s) 10, 186, 538
CaiI CAGNNNCTG 1 cut(s) 399
CciI TCATGA 1 cut(s) 577
CfoI GCGC 2 cut(s) 190, 722
Cfr10I RCCGGY 2 cut(s) 8, 536
CseI GACGC 2 cut(s) 56, 122
Csp6I GTAC 3 cut(s) 207, 596, 607
CviAII CATG 5 cut(s) 172, 245, 297, 546, 578
CviQI GTAC 3 cut(s) 207, 596, 607
DdeI CTNAG 3 cut(s) 22, 104, 199
DpnI GATC 3 cut(s) 491, 513, 561
DpnII GATC 3 cut(s) 489, 511, 559
DraIII CACNNNGTG 2 cut(s) 353, 428
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco130I CCWWGG 3 cut(s) 296, 506, 646
Eco24I GRGCYC 1 cut(s) 692
Eco31I GGTCTC 1 cut(s) 456
Eco47III AGCGCT 1 cut(s) 721
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 108, 190
EcoT14I CCWWGG 3 cut(s) 296, 506, 646
EcoT38I GRGCYC 1 cut(s) 692
ErhI CCWWGG 3 cut(s) 296, 506, 646
FaeI CATG 5 cut(s) 175, 248, 300, 549, 581
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 1 cut(s) 300
FatI CATG 5 cut(s) 171, 244, 296, 545, 577
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 18, 394
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 1 cut(s) 692
Fsp4HI GCNGC 2 cut(s) 18, 394
FspBI CTAG 1 cut(s) 769
GlaI GCGC 2 cut(s) 189, 721
GluI GCNGC 2 cut(s) 18, 394
GsaI CCCAGC 1 cut(s) 720
HaeII RGCGCY 1 cut(s) 723
HaeIII GGCC 1 cut(s) 443
HapII CCGG 3 cut(s) 9, 537, 750
HgaI GACGC 2 cut(s) 56, 122
HhaI GCGC 2 cut(s) 190, 722
Hin1II CATG 5 cut(s) 175, 248, 300, 549, 581
Hin6I GCGC 2 cut(s) 188, 720
HinP1I GCGC 2 cut(s) 188, 720
HinfI GANTC 2 cut(s) 132, 292
HpaII CCGG 3 cut(s) 9, 537, 750
HphI GGTGA 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 679, 687
Hpy188III TCNNGA 3 cut(s) 400, 578, 734
Hpy99I CGWCG 1 cut(s) 341
HpyCH4III ACNGT 4 cut(s) 211, 314, 469, 626
HpyCH4IV ACGT 2 cut(s) 163, 336
HpyCH4V TGCA 3 cut(s) 393, 673, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 23
HpyF3I CTNAG 3 cut(s) 22, 104, 199
HpySE526I ACGT 2 cut(s) 163, 336
Hsp92II CATG 5 cut(s) 175, 248, 300, 549, 581
HspAI GCGC 2 cut(s) 188, 720
KroI GCCGGC 2 cut(s) 8, 536
KroNI GCCGGC 2 cut(s) 10, 538
Kzo9I GATC 3 cut(s) 489, 511, 559
LmnI GCTCC 1 cut(s) 727
Lsp1109I GCAGC 2 cut(s) 4, 405
LweI GCATC 1 cut(s) 353
MaeI CTAG 1 cut(s) 769
MaeII ACGT 2 cut(s) 163, 336
MaeIII GTNAC 2 cut(s) 211, 626
MalI GATC 3 cut(s) 491, 513, 561
MboI GATC 3 cut(s) 489, 511, 559
MboII GAAGA 5 cut(s) 50, 62, 222, 276, 494
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 4 cut(s) 28, 74, 118, 541
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 5 cut(s) 31, 80, 246, 375, 375
MroNI GCCGGC 2 cut(s) 8, 536
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 2 cut(s) 176, 664
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 3 cut(s) 9, 537, 750
MspR9I CCNGG 3 cut(s) 110, 192, 750
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 2 cut(s) 110, 192
MvnI CGCG 3 cut(s) 116, 188, 663
MwoI GCNNNNNNNGC 2 cut(s) 14, 23
NaeI GCCGGC 2 cut(s) 10, 538
NciI CCSGG 1 cut(s) 750
NcoI CCATGG 1 cut(s) 296
NdeII GATC 3 cut(s) 489, 511, 559
NgoMIV GCCGGC 2 cut(s) 8, 536
NlaIII CATG 5 cut(s) 175, 248, 300, 549, 581
NmuCI GTSAC 2 cut(s) 211, 626
NspV TTCGAA 1 cut(s) 527
OliI CACNNNNGTG 1 cut(s) 664
PagI TCATGA 1 cut(s) 577
PctI GAATGC 1 cut(s) 409
PdiI GCCGGC 2 cut(s) 10, 538
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 19, 395
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PshAI GACNNNNGTC 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 108, 190
PspFI CCCAGC 1 cut(s) 716
PspGI CCWGG 2 cut(s) 108, 190
PstI CTGCAG 1 cut(s) 395
PstNI CAGNNNCTG 1 cut(s) 399
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 3 cut(s) 208, 597, 608
RsaNI GTAC 3 cut(s) 207, 596, 607
RseI CAYNNNNRTG 2 cut(s) 176, 664
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 2 cut(s) 18, 394
Sau3AI GATC 3 cut(s) 489, 511, 559
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 3 cut(s) 110, 192, 750
SduI GDGCHC 1 cut(s) 692
SfaNI GCATC 1 cut(s) 353
SfcI CTRYAG 1 cut(s) 391
SfuI TTCGAA 1 cut(s) 527
SmiMI CAYNNNNRTG 2 cut(s) 176, 664
SmlI CTYRAG 2 cut(s) 237, 453
SmoI CTYRAG 2 cut(s) 237, 453
Sse9I AATT 4 cut(s) 28, 74, 118, 541
SsiI CCGC 1 cut(s) 128
SspI AATATT 1 cut(s) 556
SspMI CTAG 1 cut(s) 769
StyD4I CCNGG 3 cut(s) 108, 190, 748
StyI CCWWGG 3 cut(s) 296, 506, 646
TaaI ACNGT 4 cut(s) 211, 314, 469, 626
TaiI ACGT 2 cut(s) 166, 339
TaqI TCGA 4 cut(s) 168, 339, 527, 589
TasI AATT 4 cut(s) 28, 74, 118, 541
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 2 cut(s) 211, 626
TseI GCWGC 2 cut(s) 17, 393
Tsp45I GTSAC 2 cut(s) 211, 626
TspDTI ATGAA 3 cut(s) 194, 261, 534
TspRI CASTG 1 cut(s) 108
XapI RAATTY 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.